TMEM170A

General Information

Gene Name       : TMEM170A
Gene ID             : ENSG00000166822.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM170A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM170AENSG00000166822.1210.399.179.78ENCSR000AEF
HepG2TMEM170AENSG00000166822.1211.2017.7114.46ENCSR985KAT
K562TMEM170AENSG00000166822.126.657.567.11ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM170A is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM170A RNA is bound by 9 proteins.  







eCLIP assay for TMEM170A is not avaliable on ENCORE database.





9 proteins are bound to TMEM170A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr167547787975477921-3'-UTR,intron-Distal3.310633.07801K562UPF1
chr167548113375481203-3'-UTR,intron-Distal,intron-Proximal3.428523.80864K562FAM120A
chr167548002275480081-3'-UTR,intron-Distal3.236833.05408HepG2UPF1
chr167548116375481217-3'-UTR,intron-Distal,intron-Proximal3.909255.53561K562PUM2
chr167547925475479345-3'-UTR,intron-Distal4.463698.55453HepG2UPF1
chr167547743775477484-3'-UTR,intron-Distal3.208863.37074K562TIA1
chr167548121775481259-3'-UTR,intron-Distal5.677543.68551K562PUM2
chr167549843075498511-5'-UTR,CDS,intron-Distal,intron-Proximal3.402095.86838K562FTO
chr167549815175498204-5'-UTR,intron-Distal4.669916.05264HepG2DDX3X
chr167549845175498520-5'-UTR,CDS,intron-Distal,intron-Proximal3.9493011.38001HepG2DDX3X
chr167549853575498578-5'-UTR,intron-Distal,intron-Proximal5.260204.57565HepG2DDX3X
chr167549831975498375-CDS,intron-Distal,intron-Proximal4.045296.34662HepG2PRPF8
chr167548152975481600-CDS,intron-Distal,intron-Proximal4.116376.58004HepG2U2AF2
chr167548477275484867-intron-Distal3.737645.50447HepG2ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM170A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM170A is not available on ENCORE database.

  • 77 RBPs can affect the levels of TMEM170A.  








The Knockdown/knockout RNA-Seq assay for TMEM170A is not available on ENCORE database.





77 RBPs can affect the gene expression of TMEM170A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM170AENSG00000166822.8662.65720985.19000-0.572104.048302.92250HepG2ABCF1
TMEM170AENSG00000166822.8762.15690952.48740-0.321602.917002.29540HepG2ACO1
TMEM170AENSG00000166822.8513.59060683.92730-0.413202.636701.66180HepG2ADAR
TMEM170AENSG00000166822.8665.07550957.09400-0.525106.066504.97050HepG2AKAP8L
TMEM170AENSG00000166822.8758.175701372.72790-0.8564010.762209.28800HepG2ASCC1
TMEM170AENSG00000166822.8868.793501195.79510-0.460906.310505.34160HepG2AUH
TMEM170AENSG00000166822.81308.80040845.399600.630403.962003.06300HepG2CALR
TMEM170AENSG00000166822.8683.013301035.49460-0.600309.162408.11880HepG2CELF1
TMEM170AENSG00000166822.8659.938001113.54480-0.7548017.3483015.77830HepG2DAZAP1
TMEM170AENSG00000166822.8544.66690880.98710-0.693709.569208.19920HepG2DDX19B
TMEM170AENSG00000166822.8892.79830600.298400.572605.927704.59350HepG2DDX24
TMEM170AENSG00000166822.8393.56090637.77410-0.696504.166802.62490HepG2DDX27
TMEM170AENSG00000166822.8388.75470681.59600-0.810106.267505.15980HepG2DDX55
TMEM170AENSG00000166822.81311.57790727.649400.849905.474304.11390HepG2DDX59
TMEM170AENSG00000166822.8901.352601365.11030-0.598905.066104.25290HepG2DDX6
TMEM170AENSG00000166822.8526.22870744.16910-0.499903.211102.22360HepG2EEF2
TMEM170AENSG00000166822.8909.858901312.41720-0.528504.550303.80040HepG2EIF2S1
TMEM170AENSG00000166822.8535.00080747.50840-0.482503.946902.55560HepG2EIF2S2
TMEM170AENSG00000166822.81081.352001450.42540-0.423602.755902.11780HepG2EIF4A3
TMEM170AENSG00000166822.8431.93240994.84880-1.2037014.6608013.11890HepG2FIP1L1
TMEM170AENSG00000166822.8990.27270641.881100.625402.237701.33310HepG2FTO
TMEM170AENSG00000166822.8802.739001463.26680-0.8662011.208809.90980HepG2FXR1
TMEM170AENSG00000166822.8864.415601357.47430-0.651106.228505.24980HepG2G3BP1
TMEM170AENSG00000166822.8364.79700537.92660-0.560303.885802.81050HepG2GEMIN5
TMEM170AENSG00000166822.8498.25690852.18830-0.774305.589804.00230HepG2GRSF1
TMEM170AENSG00000166822.8643.311801023.31500-0.6697011.107209.46670HepG2HNRNPA2B1
TMEM170AENSG00000166822.8513.11900773.35290-0.591804.653803.76990HepG2HNRNPC
TMEM170AENSG00000166822.81032.349501374.37950-0.412803.374502.60600HepG2HNRNPK
TMEM170AENSG00000166822.8862.579201014.39460-0.233902.358301.72970HepG2HNRNPL
TMEM170AENSG00000166822.81112.87270693.180400.682907.066206.11370HepG2HNRNPLL
TMEM170AENSG00000166822.8499.87190686.52310-0.457703.343302.30460HepG2HNRNPM
TMEM170AENSG00000166822.8661.299901073.02090-0.698305.595103.86030HepG2HSPD1
TMEM170AENSG00000166822.8602.56160784.72220-0.381102.671701.95150HepG2ILF2
TMEM170AENSG00000166822.8746.381301471.99420-0.9798012.3117011.04750HepG2MATR3
TMEM170AENSG00000166822.8940.242401506.68800-0.680306.860005.88320HepG2NCBP2
TMEM170AENSG00000166822.8904.01540614.643400.556504.604203.64600HepG2NSUN2
TMEM170AENSG00000166822.8601.407401250.49950-1.0561028.4796026.87810HepG2PCBP1
TMEM170AENSG00000166822.8994.64630748.933400.409202.953802.15750HepG2PRPF4
TMEM170AENSG00000166822.8862.664401272.41560-0.560709.211208.32930HepG2PTBP1
TMEM170AENSG00000166822.8930.733301118.82480-0.265503.236102.60580HepG2PUM1
TMEM170AENSG00000166822.8906.192801118.03460-0.303102.627001.97250HepG2PUM2
TMEM170AENSG00000166822.81263.97220817.269600.629003.415502.63420HepG2RAVER1
TMEM170AENSG00000166822.81447.117301147.512200.334603.489402.92620HepG2RBM22
TMEM170AENSG00000166822.81198.969301416.08840-0.240102.272801.77250HepG2NELFE
TMEM170AENSG00000166822.8931.858001318.87220-0.501107.813306.85570HepG2RECQL
TMEM170AENSG00000166822.8396.10920587.81750-0.569504.096903.36350HepG2RPS19
TMEM170AENSG00000166822.8587.94010779.90690-0.407602.361701.61840HepG2RPS2
TMEM170AENSG00000166822.8544.15350796.06880-0.548903.912102.62040HepG2RPS5
TMEM170AENSG00000166822.8336.57040520.18380-0.628103.693102.80210HepG2RRP9
TMEM170AENSG00000166822.8888.65610684.126600.377302.291301.69620HepG2SAFB2
TMEM170AENSG00000166822.8989.573201324.77460-0.420905.722904.92430HepG2SF3B4
TMEM170AENSG00000166822.8569.30190797.76920-0.486803.951403.20480HepG2SMN1
TMEM170AENSG00000166822.82119.075401296.076000.7092020.3028019.27200HepG2SRFBP1
TMEM170AENSG00000166822.81032.086801382.76740-0.422006.161305.52420HepG2SRSF1
TMEM170AENSG00000166822.81137.23310763.729700.574303.461802.10600HepG2SUB1
TMEM170AENSG00000166822.8969.527301183.51630-0.287703.378202.70440HepG2SUCLG1
TMEM170AENSG00000166822.81025.45730678.535000.595704.699503.85360HepG2SUPV3L1
TMEM170AENSG00000166822.8894.03190675.659500.403902.925102.18230HepG2TARDBP
TMEM170AENSG00000166822.8916.916701142.04640-0.316802.611301.79840HepG2TIA1
TMEM170AENSG00000166822.81186.83950851.137200.479604.225803.45820HepG2U2AF1
TMEM170AENSG00000166822.8293.51870400.84290-0.449602.241201.55790HepG2UCHL5
TMEM170AENSG00000166822.81908.568201033.267000.8852033.7090032.34620HepG2ZNF622
TMEM170AENSG00000166822.81023.78450763.162800.423703.716703.07700K562AGGF1
TMEM170AENSG00000166822.8548.17080760.55000-0.472404.426403.00630K562CPEB4
TMEM170AENSG00000166822.8337.42850454.95280-0.431102.561001.80580K562CPSF6
TMEM170AENSG00000166822.8946.49900786.922700.266302.312601.70790K562DDX47
TMEM170AENSG00000166822.8438.75710604.42560-0.462103.987303.14870K562EIF2S2
TMEM170AENSG00000166822.8447.40620604.54530-0.434302.968502.11990K562EIF4A3
TMEM170AENSG00000166822.8293.93460614.19810-1.0632011.9267010.04420K562FIP1L1
TMEM170AENSG00000166822.8455.40830628.70300-0.465204.076303.36290K562FXR1
TMEM170AENSG00000166822.8583.33870805.52190-0.465603.723102.84990K562GRSF1
TMEM170AENSG00000166822.8860.91640544.056000.662002.585301.41720K562HNRNPA2B1
TMEM170AENSG00000166822.8222.28510384.90650-0.792105.873205.03480K562HNRNPC
TMEM170AENSG00000166822.8337.54230505.23850-0.581903.490702.43430K562HNRNPM
TMEM170AENSG00000166822.81138.78630842.739500.434203.965302.95520K562KIF1C
TMEM170AENSG00000166822.8567.95120748.09980-0.397503.031002.15130K562MAGOH
TMEM170AENSG00000166822.8546.62710746.62080-0.449803.770902.68010K562MATR3
TMEM170AENSG00000166822.8577.75550423.975700.446402.521901.68940K562METAP2
TMEM170AENSG00000166822.8965.56600661.733800.545003.532602.50850K562NAA15
TMEM170AENSG00000166822.8459.95020726.80680-0.660107.260106.22240K562PTBP1
TMEM170AENSG00000166822.81344.725501018.757600.400403.176102.30380K562PUF60
TMEM170AENSG00000166822.81512.337701083.747900.480704.474203.09070K562PUM1
TMEM170AENSG00000166822.81400.58060787.522400.8305011.2297010.18550K562PUS1
TMEM170AENSG00000166822.81178.36840767.333800.618809.156108.10120K562RBM15
TMEM170AENSG00000166822.8515.67160697.05970-0.434803.168702.26320K562RBM22
TMEM170AENSG00000166822.8417.76470692.22130-0.728505.877404.35030K562RPS3
TMEM170AENSG00000166822.8518.44410668.28780-0.366302.300301.35640K562SRSF4
TMEM170AENSG00000166822.8976.37010597.653100.708002.712601.30810K562SUPT6H
TMEM170AENSG00000166822.8431.15840721.14220-0.742107.416806.19580K562TARDBP
TMEM170AENSG00000166822.8540.95090695.60700-0.362802.587201.79860K562TIA1
TMEM170AENSG00000166822.8811.95550569.000600.512903.502102.23980K562U2AF1
TMEM170AENSG00000166822.81181.67170959.429800.300502.164401.41180K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM170A is not available on ENCORE database.






No RBPs affect the alternative splcing events of TMEM170A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TMEM170A is not avaliable on ENCORE database.