THUMPD2

General Information

Gene Name       : THUMPD2
Gene ID             : ENSG00000138050.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: THUMPD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878THUMPD2ENSG00000138050.1414.7911.7513.27ENCSR000AEF
HepG2THUMPD2ENSG00000138050.149.2517.0313.14ENCSR985KAT
K562THUMPD2ENSG00000138050.1416.1316.1716.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for THUMPD2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • THUMPD2 RNA is bound by 16 proteins.  







eCLIP assay for THUMPD2 is not avaliable on ENCORE database.





16 proteins are bound to THUMPD2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr23999316239993226-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.780788.77485HepG2PRPF8
chr23998446239984569-3'-UTR,CDS,intron-Distal,intron-Proximal4.942145.07478HepG2U2AF2
chr23998248939982565-3'-UTR,CDS,intron-Distal,intron-Proximal3.740344.79983HepG2U2AF2
chr23996381939963916-3'-UTR,CDS,intron-Distal,intron-Proximal4.532798.73210K562PUM2
chr23999323239993294-5'-UTR,CDS,intron-Distal,intron-Proximal3.951964.69223K562SF3B4
chr24000625040006377-5'-UTR,CDS,intron-Distal,intron-Proximal3.553727.11978K562DDX3X
chr23999552339995596-5'-UTR,CDS,intron-Distal,intron-Proximal5.176803.70131HepG2PRPF8
chr23999693639997096-5'-UTR,CDS,intron-Distal,intron-Proximal3.835678.54758K562ZNF622
chr23999684139996963-5'-UTR,CDS,intron-Distal,intron-Proximal3.055584.35275HepG2HLTF
chr23998271639982822-intron-Distal3.387625.00400K562QKI
chr23998431639984388-intron-Distal,intron-Proximal4.986074.86944K562AQR
chr23998259339982702-intron-Distal,intron-Proximal3.751036.62503K562KHSRP
chr24000117840001341-intron-Distal3.223169.21771HepG2HNRNPL
chr23997258339972683-intron-Distal3.469844.05280K562CSTF2T
chr24000113440001270-intron-Distal3.7823510.60906K562HNRNPL
chr23999401939994086-intron-Distal3.881263.02234K562KHSRP
chr23997607339976128-intron-Distal3.760923.43813HepG2HNRNPC
chr23998273739982808-intron-Distal4.774485.85495HepG2QKI
chr23997259739972683-intron-Distal4.592545.06031HepG2CSTF2
chr23998486439984928-intron-Distal3.166263.31830K562KHSRP
chr23998822539988361-intron-Distal3.258856.67026K562KHSRP
chr23997677639976867-intron-Distal3.858963.19026HepG2HNRNPL
chr23998685639986960-intron-Distal4.078033.47525K562MATR3
chr23999549239995535-intron-Distal,intron-Proximal4.234654.21433K562PRPF8
chr24000533040005412-intron-Distal3.767753.29026K562KHDRBS1
chr23998836439988448-intron-Distal,intron-Proximal3.267564.10408K562KHSRP
chr23998492839984982-intron-Distal3.881263.26999K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for THUMPD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for THUMPD2 is not available on ENCORE database.

  • 58 RBPs can affect the levels of THUMPD2.  








The Knockdown/knockout RNA-Seq assay for THUMPD2 is not available on ENCORE database.





58 RBPs can affect the gene expression of THUMPD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
THUMPD2ENSG00000138050.10295.85580430.02080-0.539502.602802.08610HepG2AKAP1
THUMPD2ENSG00000138050.10206.57160355.80650-0.784504.949503.91350HepG2ASCC1
THUMPD2ENSG00000138050.10233.27360338.04060-0.535202.570701.82320HepG2CIRBP
THUMPD2ENSG00000138050.10346.03980253.618500.448202.959702.27650HepG2CKAP4
THUMPD2ENSG00000138050.10257.26020397.88540-0.629105.124304.29760HepG2CELF1
THUMPD2ENSG00000138050.10186.39870254.18290-0.447501.899001.32430HepG2DDX21
THUMPD2ENSG00000138050.10308.33220411.92830-0.417901.930401.39890HepG2DDX3X
THUMPD2ENSG00000138050.10231.44060353.85290-0.612503.079802.43130HepG2DDX6
THUMPD2ENSG00000138050.10176.51060266.76900-0.595802.535301.64930HepG2EEF2
THUMPD2ENSG00000138050.10229.31190340.16940-0.568902.839302.23900HepG2EIF2S1
THUMPD2ENSG00000138050.10232.13950351.85120-0.600003.182702.47140HepG2G3BP1
THUMPD2ENSG00000138050.10201.54760308.72070-0.615202.890602.23760HepG2GPKOW
THUMPD2ENSG00000138050.10166.29700294.61850-0.825104.713303.91350HepG2HNRNPLL
THUMPD2ENSG00000138050.10163.36300249.06070-0.608403.612702.92850HepG2HNRNPU
THUMPD2ENSG00000138050.10239.20390357.64960-0.580303.038702.33640HepG2IGF2BP2
THUMPD2ENSG00000138050.10226.86380381.54920-0.750004.364003.58760HepG2MATR3
THUMPD2ENSG00000138050.10154.64150233.19320-0.592602.541801.76460HepG2MSI2
THUMPD2ENSG00000138050.10270.67930390.53730-0.528902.713502.08620HepG2NCBP2
THUMPD2ENSG00000138050.10280.48000210.332400.415102.104601.42210HepG2PRPF4
THUMPD2ENSG00000138050.10278.69500177.028400.654603.351002.47020HepG2PRPF8
THUMPD2ENSG00000138050.10273.05850409.71500-0.585404.323103.67430HepG2NELFE
THUMPD2ENSG00000138050.10148.06070210.72030-0.509102.004401.47320HepG2RPS19
THUMPD2ENSG00000138050.10287.61880175.123900.715703.679302.79000HepG2RRP9
THUMPD2ENSG00000138050.10494.07670287.145500.782905.351404.39650HepG2SF3A3
THUMPD2ENSG00000138050.10616.33310474.750700.376402.464201.98160HepG2SRFBP1
THUMPD2ENSG00000138050.10355.87940454.74510-0.353702.321901.74220HepG2SUCLG1
THUMPD2ENSG00000138050.10126.76990228.38520-0.849303.378602.63950HepG2SUPV3L1
THUMPD2ENSG00000138050.10199.70470287.18070-0.524102.454601.76640HepG2TARDBP
THUMPD2ENSG00000138050.10184.29820244.17180-0.405901.913001.42720HepG2TRIM56
THUMPD2ENSG00000138050.10478.10040246.450700.955908.158807.08120HepG2U2AF1
THUMPD2ENSG00000138050.10351.10540245.858200.514003.131602.50110HepG2UTP3
THUMPD2ENSG00000138050.10219.15210280.07060-0.353901.780301.31550HepG2ZNF622
THUMPD2ENSG00000138050.10705.65500491.479200.521705.715804.94690K562AGGF1
THUMPD2ENSG00000138050.10702.94200511.409600.458802.812702.15370K562AKAP8L
THUMPD2ENSG00000138050.101255.35130979.068400.358502.619502.04460K562AQR
THUMPD2ENSG00000138050.10360.87630523.91450-0.537803.483102.50460K562BOP1
THUMPD2ENSG00000138050.10349.43060557.07210-0.672906.165304.99660K562CPSF6
THUMPD2ENSG00000138050.101224.29610827.887200.564309.241008.13440K562DDX47
THUMPD2ENSG00000138050.10701.93320550.293100.351002.952402.04330K562DKC1
THUMPD2ENSG00000138050.10452.57150703.56750-0.636505.665804.69120K562EIF2S2
THUMPD2ENSG00000138050.10595.06780459.659300.372402.803502.00210K562EIF3G
THUMPD2ENSG00000138050.10578.33390429.793000.428202.779501.95620K562EIF4A3
THUMPD2ENSG00000138050.10773.91780520.188800.573003.675902.83540K562G3BP2
THUMPD2ENSG00000138050.10371.34180531.86740-0.518303.553802.65750K562GPKOW
THUMPD2ENSG00000138050.10555.17330748.24590-0.430603.305002.13850K562HNRNPL
THUMPD2ENSG00000138050.10464.11950613.14050-0.401703.207102.24900K562HNRNPU
THUMPD2ENSG00000138050.10435.72240583.48060-0.421302.681901.51430K562IGF2BP3
THUMPD2ENSG00000138050.10773.80260542.722100.511702.964302.10850K562KIF1C
THUMPD2ENSG00000138050.10303.34530601.91960-0.988608.234706.54300K562MATR3
THUMPD2ENSG00000138050.10787.13960607.987400.372503.020802.06180K562MBNL1
THUMPD2ENSG00000138050.10740.49580426.156100.797002.611601.75900K562NAA15
THUMPD2ENSG00000138050.10922.90630536.664700.782109.527407.67740K562PCBP2
THUMPD2ENSG00000138050.10664.73670386.284800.783007.411006.18600K562PRPF8
THUMPD2ENSG00000138050.10800.58860585.912900.450304.070103.27970K562PTBP1
THUMPD2ENSG00000138050.101711.078001210.002100.499805.191604.07740K562PUF60
THUMPD2ENSG00000138050.10718.97770507.155000.503403.694603.08000K562PUS1
THUMPD2ENSG00000138050.10719.46620494.165200.541805.585904.76910K562RBM15
THUMPD2ENSG00000138050.10594.73220393.550400.595604.087803.09280K562RPS19
THUMPD2ENSG00000138050.10796.57360541.082300.557906.115104.80640K562SF3B4
THUMPD2ENSG00000138050.10686.97470504.431500.445502.671501.60100K562U2AF1
THUMPD2ENSG00000138050.10727.80620520.902700.482404.473503.45770K562U2AF2
THUMPD2ENSG00000138050.10537.43700673.96730-0.326602.636801.93570K562UPF1
THUMPD2ENSG00000138050.10746.18830599.690000.315202.854501.99450K562WDR43
THUMPD2ENSG00000138050.10601.27130372.071800.692303.100001.41060K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for THUMPD2 is not available on ENCORE database.





20 RBPs can affect the splicing of THUMPD2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETHUMPD2ENSG00000138050.10chr2-3999604039996233399955633999564139996849399972590.231000.000060.01003includedHepG2G3BP1
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.284000.000000.00014excludedK562SF3B4
SETHUMPD2ENSG00000138050.10chr2-399968493999725939995563399956413999864439998780-0.285000.000240.00651excludedK562SF3B4
SETHUMPD2ENSG00000138050.10chr2-3998438739984508399830283998310039988470399885580.438000.000000.00189includedK562MATR3
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.211000.000010.00082excludedK562AKAP8L
SETHUMPD2ENSG00000138050.10chr2-399968493999725939995563399956413999864439998780-0.288000.002360.05346excludedHepG2HNRNPK
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.414000.000770.01137excludedHepG2U2AF2
SETHUMPD2ENSG00000138050.10chr2-3999604039996233399955633999564139996849399972590.089000.000730.00943includedK562AQR
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.089000.004090.03945excludedK562AQR
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.251000.000000.00002excludedK562PUS1
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.293000.000130.00406excludedK562U2AF1
SETHUMPD2ENSG00000138050.10chr2-3999604039996233399955633999564139996849399972590.195000.001130.06995includedK562HNRNPL
SETHUMPD2ENSG00000138050.10chr2-3999604039996233399955633999564139996849399972590.182000.000920.08928includedHepG2SSB
SETHUMPD2ENSG00000138050.10chr2-3999604039996233399955633999564139996849399972590.167000.001340.08085includedHepG2IGF2BP3
SETHUMPD2ENSG00000138050.10chr2-3999604039996233399955633999564139996849399972590.085000.000140.03282includedK562EIF4G2
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.159000.001600.04846excludedK562UTP18
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.367000.000000.00000excludedK562U2AF2
SETHUMPD2ENSG00000138050.10chr2-3999604039996233399955633999564139996849399972590.631000.000000.00000includedK562HNRNPU
SETHUMPD2ENSG00000138050.10chr2-3998438739984508399830283998310039988470399885580.442000.000000.00000includedK562HNRNPU
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.140000.000950.02638excludedK562RBM15
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.181000.000060.00275excludedK562AGGF1
SETHUMPD2ENSG00000138050.10chr2-399824343998254939971509399716183998302839983100-0.171000.002850.08867excludedK562SF3B1
SETHUMPD2ENSG00000138050.10chr2-3999604039996233399955633999564139996849399972590.565000.000000.00001includedHepG2HNRNPU
SETHUMPD2ENSG00000138050.10chr2-3998438739984508399830283998310039988470399885580.468000.000530.02628includedHepG2HNRNPU
SETHUMPD2ENSG00000138050.10chr2-399843873998450839983028399831003998847039988558-0.236000.000340.01738excludedK562PTBP1
A3SSTHUMPD2ENSG00000138050.10chr2-3998847039988669399884703998855839993196399932490.157000.000000.00000longerK562AQR
A3SSTHUMPD2ENSG00000138050.10chr2-3997150939971670399715093997161839982434399825490.150000.000030.00024longerK562AQR
A3SSTHUMPD2ENSG00000138050.10chr2-3999556339995747399955633999564139996849399972590.216000.000000.00000longerK562AQR
MXETHUMPD2ENSG00000138050.10chr2-3999604039996233399968493999725939995563399956413999864439998780-0.090000.002540.020332includedK562AQR
MXETHUMPD2ENSG00000138050.10chr2-3999604039996233399968493999725939995563399956413999864439998780-0.075000.001020.076012includedK562PUM1
MXETHUMPD2ENSG00000138050.10chr2-3999604039996233399968493999725939995563399956413999864439998780-0.547000.000020.001252includedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for THUMPD2 is not avaliable on ENCORE database.