TARBP2

General Information

Gene Name       : TARBP2
Gene ID             : ENSG00000139546.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TARBP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TARBP2ENSG00000139546.108.5615.0111.79ENCSR000AEF
HepG2TARBP2ENSG00000139546.1039.1623.8531.50ENCSR985KAT
K562TARBP2ENSG00000139546.1037.2730.0033.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TARBP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TARBP2 RNA is bound by 9 proteins.  







eCLIP assay for TARBP2 is not avaliable on ENCORE database.





9 proteins are bound to TARBP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125389943953899500+3'-UTR,CDS4.495613.49905HepG2PPIG
chr125389750253897563+3'-UTR,5'-UTR,CDS,intron-Proximal3.579373.95921HepG2U2AF2
chr125389847553898525+3'-UTR,CDS,intron-Proximal4.673684.08604HepG2PPIG
chr125389818353898255+3'-UTR,CDS,intron-Proximal4.5708911.08513HepG2PPIG
chr125389688653896929+5'-UTR,CDS,intron-Distal,intron-Proximal4.258643.49332HepG2PPIG
chr125389507553895238+5'-UTR,CDS,intron-Distal4.471197.22925K562DDX3X
chr125389712853897225+intron-Distal,intron-Proximal3.453595.62662K562BUD13
chr125389904653899098+intron-Distal,intron-Proximal4.823594.65563K562AQR
chr125389709953897217+intron-Distal,intron-Proximal3.151933.92899HepG2PRPF4
chr125389759253897596+intron-Proximal5.234826.75320K562AQR
chr125389761053897685+intron-Proximal5.541087.23906K562EFTUD2
chr125389809853898161+intron-Proximal3.496163.50696K562BUD13
chr125389759653897644+intron-Proximal5.8775310.48996K562AQR
chr125389759653897684+intron-Proximal3.783386.39581HepG2EFTUD2
chr125389811053898180+intron-Proximal5.069205.40008K562SF3B4
chr125389761353897680+intron-Proximal4.399847.40409K562BUD13
chr125389761253897677+intron-Proximal4.449076.35873K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TARBP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TARBP2 is not available on ENCORE database.

  • 83 RBPs can affect the levels of TARBP2.  








The Knockdown/knockout RNA-Seq assay for TARBP2 is not available on ENCORE database.





83 RBPs can affect the gene expression of TARBP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TARBP2ENSG00000139546.61115.65620488.227001.1922013.8930012.79660HepG2AKAP1
TARBP2ENSG00000139546.6516.61310414.016700.319302.144101.45750HepG2AKAP8L
TARBP2ENSG00000139546.6604.04800403.941100.580403.989303.05350HepG2ASCC1
TARBP2ENSG00000139546.6561.87120383.100700.552402.415301.54110HepG2BCCIP
TARBP2ENSG00000139546.6351.95720209.579900.747805.039004.26220HepG2BOP1
TARBP2ENSG00000139546.6607.24180383.780200.661905.092904.06200HepG2CIRBP
TARBP2ENSG00000139546.6611.17060411.988600.568906.740005.78500HepG2CKAP4
TARBP2ENSG00000139546.6562.31040274.052801.036807.156705.93000HepG2CNOT7
TARBP2ENSG00000139546.6182.49110280.26290-0.619002.661101.34350HepG2CSTF2T
TARBP2ENSG00000139546.6472.51540381.119900.310002.178301.43160HepG2DDX19B
TARBP2ENSG00000139546.6787.13900467.629200.751204.537103.75100HepG2DDX3X
TARBP2ENSG00000139546.6381.07050283.343200.427403.152702.46420HepG2DNAJC2
TARBP2ENSG00000139546.6387.32210481.57220-0.314202.097101.35210HepG2EIF4G1
TARBP2ENSG00000139546.6684.74630430.704600.668805.363504.42060HepG2FXR1
TARBP2ENSG00000139546.6654.61560399.442000.712605.654904.71720HepG2G3BP1
TARBP2ENSG00000139546.6319.51750224.231800.510802.352901.53390HepG2GEMIN5
TARBP2ENSG00000139546.6399.73820288.628700.469702.642202.00820HepG2HNRNPA1
TARBP2ENSG00000139546.6566.95780404.703900.486303.018202.28970HepG2HNRNPK
TARBP2ENSG00000139546.6470.10560318.916700.559705.029304.23210HepG2HNRNPU
TARBP2ENSG00000139546.6646.83020443.416600.544603.537502.82540HepG2NCBP2
TARBP2ENSG00000139546.6160.18230250.56260-0.645502.323801.52410HepG2PABPC1
TARBP2ENSG00000139546.6557.48140447.539900.316802.109801.56790HepG2PCBP1
TARBP2ENSG00000139546.6708.32490490.504800.530006.436205.61080HepG2PUM1
TARBP2ENSG00000139546.6306.64310447.61100-0.545701.942301.36930HepG2RBM25
TARBP2ENSG00000139546.6524.84400374.846300.485502.538201.59110HepG2RBM27
TARBP2ENSG00000139546.6332.93420245.109600.441702.133401.58690HepG2RPS19
TARBP2ENSG00000139546.6475.92070345.691600.461102.336001.59670HepG2RPS2
TARBP2ENSG00000139546.6571.92160361.353700.662302.899702.20910HepG2SF3A3
TARBP2ENSG00000139546.6364.66080229.247800.669502.902502.10040HepG2SNRNP70
TARBP2ENSG00000139546.6546.04950721.69630-0.402403.617503.06820HepG2SRFBP1
TARBP2ENSG00000139546.6575.53310456.216100.335102.241701.67110HepG2SRSF5
TARBP2ENSG00000139546.6293.25900402.59680-0.457203.392402.79350HepG2SRSF9
TARBP2ENSG00000139546.6657.60210518.874100.341702.524201.92510HepG2SUCLG1
TARBP2ENSG00000139546.6297.50840444.77440-0.580104.567103.87480HepG2TAF15
TARBP2ENSG00000139546.6316.02660408.73070-0.371102.135101.39910HepG2TIA1
TARBP2ENSG00000139546.6639.79800451.398900.503103.736702.70750HepG2TUFM
TARBP2ENSG00000139546.6328.58800221.455900.569202.629201.89030HepG2UCHL5
TARBP2ENSG00000139546.6245.14090374.44230-0.611103.798602.38850K562AARS
TARBP2ENSG00000139546.6800.37060511.699300.645308.925407.98100K562AGGF1
TARBP2ENSG00000139546.6596.99590415.837400.521605.217603.08830K562AKAP1
TARBP2ENSG00000139546.6749.68410562.297400.414803.208202.13170K562AKAP8
TARBP2ENSG00000139546.6919.68450532.450500.7884010.006608.66280K562AKAP8L
TARBP2ENSG00000139546.61137.25870792.804000.520404.933904.19060K562AQR
TARBP2ENSG00000139546.6698.60970558.676800.322402.528901.65760K562ATP5C1
TARBP2ENSG00000139546.6314.06940229.008100.455602.164301.46220K562CPSF6
TARBP2ENSG00000139546.6569.54500421.340300.434703.163202.04290K562DDX3X
TARBP2ENSG00000139546.6796.86680518.254700.620608.371307.31840K562DDX47
TARBP2ENSG00000139546.6564.92030427.180200.403103.120901.71180K562DDX6
TARBP2ENSG00000139546.6579.84320378.535200.615103.353001.93700K562EEF2
TARBP2ENSG00000139546.6627.38280365.652300.778806.491505.04630K562EFTUD2
TARBP2ENSG00000139546.6582.10620391.355900.572703.311902.17360K562EIF3D
TARBP2ENSG00000139546.6347.64650208.286900.738905.485204.37840K562EIF3G
TARBP2ENSG00000139546.6665.72420440.191600.596705.315104.17900K562EIF4A3
TARBP2ENSG00000139546.6526.01930396.411600.408003.065101.83130K562EIF4B
TARBP2ENSG00000139546.61190.54330890.839300.418305.345504.06000K562EIF4G2
TARBP2ENSG00000139546.6551.65520384.239200.521704.074302.45910K562EWSR1
TARBP2ENSG00000139546.6581.37150390.171500.575304.593903.48140K562FIP1L1
TARBP2ENSG00000139546.6231.76340355.77010-0.618302.561501.48430K562FKBP4
TARBP2ENSG00000139546.688.17750209.21310-1.246506.203505.05150K562G3BP2
TARBP2ENSG00000139546.6298.66650218.637300.449902.045201.35910K562GPKOW
TARBP2ENSG00000139546.61217.57500861.112500.499604.934103.92670K562GRSF1
TARBP2ENSG00000139546.6464.17670320.962700.532202.643701.73600K562HNRNPM
TARBP2ENSG00000139546.6712.56430528.932200.429803.042302.20910K562HSPD1
TARBP2ENSG00000139546.6797.74440565.048200.497504.419103.34320K562KIF1C
TARBP2ENSG00000139546.6496.88400356.007500.480903.388802.45300K562MAGOH
TARBP2ENSG00000139546.6339.20010213.418300.668404.034102.96370K562METAP2
TARBP2ENSG00000139546.6637.23920443.687600.522202.881601.97830K562NAA15
TARBP2ENSG00000139546.6560.60710360.646000.636304.277202.57210K562NONO
TARBP2ENSG00000139546.6629.37450515.070100.289002.196501.52420K562NSUN2
TARBP2ENSG00000139546.6781.10940339.672401.201307.407805.52430K562PABPN1
TARBP2ENSG00000139546.6698.00360442.981000.655906.125304.82460K562PPIG
TARBP2ENSG00000139546.6730.80680403.880400.855503.757501.96820K562PPP1R8
TARBP2ENSG00000139546.6610.94150355.825500.779806.387705.24840K562PRPF8
TARBP2ENSG00000139546.61072.30240528.014501.0220015.3837014.14350K562PUS1
TARBP2ENSG00000139546.6885.39250514.495700.7831011.8229010.60400K562RBM15
TARBP2ENSG00000139546.6530.32950331.646100.677105.867904.58410K562RBM22
TARBP2ENSG00000139546.6543.08520362.341800.583703.224602.34180K562RPS19
TARBP2ENSG00000139546.6553.80000310.667000.833903.123101.82180K562SF1
TARBP2ENSG00000139546.6639.77040508.192200.332102.366701.60660K562SF3A3
TARBP2ENSG00000139546.6342.23840217.451000.654203.958502.92980K562SF3B4
TARBP2ENSG00000139546.6790.60130378.778501.061505.610603.45130K562SFPQ
TARBP2ENSG00000139546.6655.92460356.738600.878603.831002.29490K562SNRNP200
TARBP2ENSG00000139546.6493.29250339.087100.540703.910403.07550K562SRSF1
TARBP2ENSG00000139546.6520.84930320.251000.701606.065304.40600K562SRSF5
TARBP2ENSG00000139546.6503.85980344.325500.549103.033501.96720K562SUPV3L1
TARBP2ENSG00000139546.6540.13150343.170600.654304.792803.85190K562TARDBP
TARBP2ENSG00000139546.6500.26250331.028800.595604.727803.61360K562TIA1
TARBP2ENSG00000139546.6456.37240324.855800.490302.943001.80930K562TRA2A
TARBP2ENSG00000139546.6504.55620375.349900.426702.346601.48670K562TRIM56
TARBP2ENSG00000139546.6883.93640535.382400.723303.575102.04430K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TARBP2 is not available on ENCORE database.





14 RBPs can affect the splicing of TARBP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.226000.000150.00836excludedK562PRPF8
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.342000.000660.01435excludedHepG2U2AF1
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.183000.002110.04902excludedHepG2HNRNPK
SETARBP2ENSG00000139546.6chr12+5389818053898253538974965389759253898481538985990.089000.009660.08888includedHepG2U2AF2
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.389000.002850.03361excludedHepG2U2AF2
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.246000.000010.00072excludedK562FXR1
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.294000.000000.00033excludedK562EFTUD2
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.457000.000000.00020excludedHepG2TIAL1
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.273000.000610.04255excludedHepG2SRSF9
SETARBP2ENSG00000139546.6chr12+538968105389691353895798538959685389749653897592-0.137000.000040.00130excludedK562HNRNPC
SETARBP2ENSG00000139546.6chr12+538989185389904653898481538985995389943253899634-0.248000.000190.00475excludedK562HNRNPC
A3SSTARBP2ENSG00000139546.6chr12+5389939353899635538994325389963553898897538990460.105000.000290.00226longerK562AQR
A5SSTARBP2ENSG00000139546.6chr12+5389681053896996538968105389691353897496538975920.124000.000110.00626longerK562PUS1
A5SSTARBP2ENSG00000139546.6chr12+5389681053896996538968105389691353897496538975920.228000.000000.00002longerK562AQR
A5SSTARBP2ENSG00000139546.6chr12+5389751353897749538975135389759253898180538982530.158000.000000.00000longerK562AQR
A5SSTARBP2ENSG00000139546.6chr12+5389681053896996538968105389691353897496538975920.189000.000460.07260longerHepG2HNRNPU
A5SSTARBP2ENSG00000139546.6chr12+5389681053896996538968105389691353897496538975920.283000.000360.02782longerHepG2HNRNPK
A5SSTARBP2ENSG00000139546.6chr12+5389681053896996538968105389691353897496538975920.214000.000360.09658longerHepG2G3BP1
A5SSTARBP2ENSG00000139546.6chr12+5389681053896996538968105389691353897496538975920.107000.000620.05886longerK562AKAP8L
MXETARBP2ENSG00000139546.6chr12+5389579853895968538967765389691353895388538954925389751353897592-0.245000.016220.093202includedK562AQR
MXETARBP2ENSG00000139546.6chr12+53895803538959685389681053896913538947365389478553897496538975920.145000.000190.005461includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TARBP2 is not avaliable on ENCORE database.