SREK1IP1

General Information

Gene Name : SREK1IP1
Gene ID : ENSG00000153006.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SREK1IP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SREK1IP1	ENSG00000153006.15	20.49	19.73	20.11	ENCSR000AEF
HepG2	SREK1IP1	ENSG00000153006.15	7.99	12.35	10.17	ENCSR985KAT
K562	SREK1IP1	ENSG00000153006.15	16.65	16.10	16.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SREK1IP1 is not avaliable on ENCORE database.

Proteins bound to RNA

SREK1IP1 RNA is bound by 9 proteins.

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eCLIP assay for SREK1IP1 is not avaliable on ENCORE database.

9 proteins are bound to SREK1IP1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	64018331	64018353	-	3'-UTR,intron-Distal	5.33373	15.42900	K562	TROVE2
chr5	64018353	64018363	-	3'-UTR,intron-Distal	5.91870	8.35144	K562	TROVE2
chr5	64050606	64050807	-	intron-Distal,intron-Proximal	3.94295	8.11145	K562	KHSRP
chr5	64018311	64018331	-	3'-UTR,intron-Distal	4.42872	7.14198	K562	TROVE2
chr5	64064172	64064310	-	intron-Distal	4.39306	5.89229	K562	EFTUD2
chr5	64020185	64020253	-	3'-UTR,CDS,intron-Distal	3.40778	5.65349	K562	UCHL5
chr5	64018019	64018058	-	3'-UTR,intron-Distal	4.74253	4.92383	K562	FAM120A
chr5	64020351	64020401	-	CDS,intron-Distal	3.65782	4.76274	K562	UCHL5
chr5	64051886	64052000	-	intron-Distal	3.39065	4.30679	K562	KHSRP
chr5	64048936	64049036	-	intron-Distal	4.38154	4.17759	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 14 entries

eCLIP assay for SREK1IP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SREK1IP1 is not available on ENCORE database.
71 RBPs can affect the levels of SREK1IP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SREK1IP1 is not available on ENCORE database.

71 RBPs can affect the gene expression of SREK1IP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SREK1IP1	ENSG00000153006.10	1871.70610	781.20170	1.26050	52.19840	50.73890	HepG2	SRFBP1
SREK1IP1	ENSG00000153006.10	297.87320	871.86660	-1.54940	33.16120	30.46840	K562	CPSF6
SREK1IP1	ENSG00000153006.10	269.71960	678.27540	-1.33040	27.28480	26.04920	HepG2	SSB
SREK1IP1	ENSG00000153006.10	246.87820	537.33220	-1.12200	17.72010	16.29020	HepG2	HNRNPU
SREK1IP1	ENSG00000153006.10	238.85170	692.68630	-1.53610	16.51430	15.03020	HepG2	IGF2BP2
SREK1IP1	ENSG00000153006.10	908.51380	510.07610	0.83270	13.97570	12.71940	K562	FXR1
SREK1IP1	ENSG00000153006.10	302.97690	558.57730	-0.88250	13.52050	12.54000	HepG2	ZNF622
SREK1IP1	ENSG00000153006.10	266.25210	522.13190	-0.97160	11.86130	10.95310	HepG2	TIAL1
SREK1IP1	ENSG00000153006.10	207.49200	474.42360	-1.19310	12.22740	10.89920	HepG2	CPSF6
SREK1IP1	ENSG00000153006.10	298.29160	661.27990	-1.14850	12.07150	9.47250	K562	IGF2BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SREK1IP1 is not available on ENCORE database.

11 RBPs can affect the splicing of SREK1IP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64050141	64050189	64036883	64037027	64064331	64064446	-0.22600	0.00000	0.00023	excluded	K562	AKAP8L
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64050141	64050189	64036883	64037027	64064331	64064512	-0.17300	0.00000	0.00000	excluded	K562	AQR
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64050141	64050189	64036883	64037027	64064331	64064446	-0.32400	0.00000	0.00000	excluded	K562	PUS1
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64050141	64050189	64036883	64037027	64064331	64064446	-0.26600	0.00000	0.00001	excluded	K562	UTP18
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64050141	64050189	64036883	64037027	64064331	64064446	-0.30800	0.00000	0.00000	excluded	K562	RBM15
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64050141	64050189	64036883	64037027	64064331	64064446	-0.25400	0.00000	0.00000	excluded	K562	AGGF1
A3SS	SREK1IP1	ENSG00000153006.10	chr5	-	64036962	64037064	64036962	64037027	64050141	64050293	0.05100	0.00001	0.00013	longer	K562	AQR
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64060801	64060948	64050141	64050189	64064331	64064454	0.12900	0.00013	0.00391	included	K562	SRSF1
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64050141	64050189	64036883	64037027	64064331	64064446	-0.11300	0.00018	0.01077	excluded	K562	SF3B1
SE	SREK1IP1	ENSG00000153006.10	chr5	-	64050141	64050189	64036883	64037027	64064331	64064446	0.07500	0.00026	0.01399	included	K562	PTBP1

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SREK1IP1

General Information

Functions

Localization

Domains (AlphaFold: SREK1IP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SREK1IP1 is not avaliable on ENCORE database.

9 proteins are bound to SREK1IP1 RNA:

eCLIP assay for SREK1IP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SREK1IP1 is not available on ENCORE database.

71 RBPs can affect the gene expression of SREK1IP1 :

The Knockdown/knockout RNA-Seq assay for SREK1IP1 is not available on ENCORE database.

11 RBPs can affect the splicing of SREK1IP1 :

The Knockdown/knockout RNA-Seq assay for SREK1IP1 is not avaliable on ENCORE database.