SREK1IP1

General Information

Gene Name       : SREK1IP1
Gene ID             : ENSG00000153006.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SREK1IP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SREK1IP1ENSG00000153006.1520.4919.7320.11ENCSR000AEF
HepG2SREK1IP1ENSG00000153006.157.9912.3510.17ENCSR985KAT
K562SREK1IP1ENSG00000153006.1516.6516.1016.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SREK1IP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SREK1IP1 RNA is bound by 9 proteins.  







eCLIP assay for SREK1IP1 is not avaliable on ENCORE database.





9 proteins are bound to SREK1IP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr56401831164018331-3'-UTR,intron-Distal4.428727.14198K562TROVE2
chr56401833164018353-3'-UTR,intron-Distal5.3337315.42900K562TROVE2
chr56401801964018058-3'-UTR,intron-Distal4.742534.92383K562FAM120A
chr56402018564020253-3'-UTR,CDS,intron-Distal3.407785.65349K562UCHL5
chr56401793664017992-3'-UTR,intron-Distal3.393323.80864K562FAM120A
chr56401835364018363-3'-UTR,intron-Distal5.918708.35144K562TROVE2
chr56406436264064432-5'-UTR,intron-Distal3.615573.95805K562DDX3X
chr56406434964064506-5'-UTR,intron-Distal,intron-Proximal4.226163.98935HepG2NCBP2
chr56402035164020401-CDS,intron-Distal3.657824.76274K562UCHL5
chr56405188664052000-intron-Distal3.390654.30679K562KHSRP
chr56405188864051953-intron-Distal3.512523.10834HepG2CSTF2
chr56406417264064310-intron-Distal4.393065.89229K562EFTUD2
chr56405060664050807-intron-Distal,intron-Proximal3.942958.11145K562KHSRP
chr56404893664049036-intron-Distal4.381544.17759HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SREK1IP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SREK1IP1 is not available on ENCORE database.

  • 71 RBPs can affect the levels of SREK1IP1.  








The Knockdown/knockout RNA-Seq assay for SREK1IP1 is not available on ENCORE database.





71 RBPs can affect the gene expression of SREK1IP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SREK1IP1ENSG00000153006.10717.98750549.701800.385203.820403.12710HepG2ACO1
SREK1IP1ENSG00000153006.10349.82780531.44790-0.603302.916501.95150HepG2BCCIP
SREK1IP1ENSG00000153006.10360.35940727.34270-1.013202.925301.92160HepG2CCAR1
SREK1IP1ENSG00000153006.10421.32500549.69560-0.383702.364601.74190HepG2CKAP4
SREK1IP1ENSG00000153006.10207.49200474.42360-1.1931012.2274010.89920HepG2CPSF6
SREK1IP1ENSG00000153006.10513.89800716.73860-0.480005.122104.29550HepG2CELF1
SREK1IP1ENSG00000153006.10594.04840770.81330-0.375804.429803.52690HepG2DAZAP1
SREK1IP1ENSG00000153006.10254.80350473.44840-0.893808.367507.25680HepG2DDX21
SREK1IP1ENSG00000153006.10368.15110489.79280-0.411902.362301.42870HepG2DDX5
SREK1IP1ENSG00000153006.10345.46460481.67900-0.479503.739002.92910HepG2DNAJC21
SREK1IP1ENSG00000153006.10382.65820658.81260-0.783805.771404.93340HepG2EIF2S1
SREK1IP1ENSG00000153006.10557.02390723.26570-0.376802.154801.37480HepG2G3BP2
SREK1IP1ENSG00000153006.10409.84590537.83130-0.392101.850401.31980HepG2GPKOW
SREK1IP1ENSG00000153006.10394.39120540.90810-0.455802.783602.08850HepG2HNRNPC
SREK1IP1ENSG00000153006.10366.38760494.33700-0.432103.492702.69450HepG2HNRNPF
SREK1IP1ENSG00000153006.10490.69490689.73510-0.491203.385002.61460HepG2HNRNPK
SREK1IP1ENSG00000153006.10525.22410702.19540-0.418904.457003.61720HepG2HNRNPL
SREK1IP1ENSG00000153006.10307.82140513.25910-0.737605.476004.62120HepG2HNRNPLL
SREK1IP1ENSG00000153006.10246.87820537.33220-1.1220017.7201016.29020HepG2HNRNPU
SREK1IP1ENSG00000153006.10376.52200486.77880-0.370502.292601.63160HepG2IGF2BP1
SREK1IP1ENSG00000153006.10238.85170692.68630-1.5361016.5143015.03020HepG2IGF2BP2
SREK1IP1ENSG00000153006.10390.46280548.86770-0.491305.024904.06180HepG2ILF2
SREK1IP1ENSG00000153006.10379.67410502.56680-0.404602.961101.91130HepG2KIF1C
SREK1IP1ENSG00000153006.10493.09920734.70060-0.575304.199403.39410HepG2MAGOH
SREK1IP1ENSG00000153006.10531.37800738.84740-0.475502.792102.15850HepG2MATR3
SREK1IP1ENSG00000153006.10583.79220756.27960-0.373502.004001.46070HepG2NCBP2
SREK1IP1ENSG00000153006.10344.94430479.25800-0.474403.693402.85410HepG2PPIL4
SREK1IP1ENSG00000153006.10772.46810530.128300.543002.396001.73680HepG2RAVER1
SREK1IP1ENSG00000153006.10987.81060691.653800.514106.214305.51330HepG2RBM22
SREK1IP1ENSG00000153006.10430.44300581.09660-0.433002.349301.36420HepG2RPS5
SREK1IP1ENSG00000153006.10323.93700478.52020-0.562905.294304.45580HepG2SAFB2
SREK1IP1ENSG00000153006.10523.05580699.45720-0.419304.139003.30500HepG2SLBP
SREK1IP1ENSG00000153006.10334.10000558.03890-0.740109.879008.78260HepG2SMN1
SREK1IP1ENSG00000153006.101871.70610781.201701.2605052.1984050.73890HepG2SRFBP1
SREK1IP1ENSG00000153006.10745.59250546.600900.447802.357301.44260HepG2SRSF3
SREK1IP1ENSG00000153006.10799.31000624.427200.356103.417902.81790HepG2SRSF9
SREK1IP1ENSG00000153006.10269.71960678.27540-1.3304027.2848026.04920HepG2SSB
SREK1IP1ENSG00000153006.10330.55470500.17550-0.597504.029603.17420HepG2TARDBP
SREK1IP1ENSG00000153006.10464.54560633.93100-0.448503.660602.70470HepG2TIA1
SREK1IP1ENSG00000153006.10266.25210522.13190-0.9716011.8613010.95310HepG2TIAL1
SREK1IP1ENSG00000153006.10384.31680526.78520-0.454904.029703.37450HepG2TRIM56
SREK1IP1ENSG00000153006.10609.47640455.081500.421302.250001.67760HepG2U2AF1
SREK1IP1ENSG00000153006.10216.89790307.32400-0.502702.119001.45560HepG2UCHL5
SREK1IP1ENSG00000153006.10371.28700507.88360-0.452003.806503.00750HepG2UPF1
SREK1IP1ENSG00000153006.10321.98140522.04680-0.697203.764402.55980HepG2UTP18
SREK1IP1ENSG00000153006.10268.34580490.34440-0.8697010.216709.18140HepG2UTP3
SREK1IP1ENSG00000153006.10378.56140538.82240-0.509302.642001.57760HepG2XPO5
SREK1IP1ENSG00000153006.10753.92010521.113800.532702.759201.49530HepG2XRCC5
SREK1IP1ENSG00000153006.10368.26060512.06190-0.475602.068101.43270HepG2XRN2
SREK1IP1ENSG00000153006.10302.97690558.57730-0.8825013.5205012.54000HepG2ZNF622
SREK1IP1ENSG00000153006.101756.748001165.787400.591506.989506.12620K562AQR
SREK1IP1ENSG00000153006.10601.91260754.74440-0.326402.578101.32370K562BCCIP
SREK1IP1ENSG00000153006.10587.96900729.37750-0.310902.557801.63770K562BCLAF1
SREK1IP1ENSG00000153006.10157.08260272.43930-0.794405.027603.51070K562CCAR1
SREK1IP1ENSG00000153006.10297.87320871.86660-1.5494033.1612030.46840K562CPSF6
SREK1IP1ENSG00000153006.10555.70380711.33190-0.356202.825601.60180K562DDX21
SREK1IP1ENSG00000153006.10359.19380469.47550-0.386302.386201.42080K562DDX3X
SREK1IP1ENSG00000153006.10544.13370957.40320-0.815204.871603.95360K562EIF2S2
SREK1IP1ENSG00000153006.10681.12860980.10260-0.525003.522102.55560K562FIP1L1
SREK1IP1ENSG00000153006.10703.82690887.10930-0.333902.097701.34790K562FMR1
SREK1IP1ENSG00000153006.10908.51380510.076100.8327013.9757012.71940K562FXR1
SREK1IP1ENSG00000153006.10805.22290515.576300.643104.538203.58390K562G3BP2
SREK1IP1ENSG00000153006.10658.95720832.41570-0.337102.252501.53540K562GPKOW
SREK1IP1ENSG00000153006.10393.67330520.53090-0.403002.368901.81050K562HNRNPC
SREK1IP1ENSG00000153006.10969.89950660.544900.554104.569202.95020K562HNRNPK
SREK1IP1ENSG00000153006.10646.97480872.22790-0.431004.306903.18350K562HNRNPU
SREK1IP1ENSG00000153006.101000.386701328.90320-0.409702.542401.77630K562HSPD1
SREK1IP1ENSG00000153006.10298.29160661.27990-1.1485012.071509.47250K562IGF2BP2
SREK1IP1ENSG00000153006.10504.10870672.63960-0.416102.999101.74470K562IGF2BP3
SREK1IP1ENSG00000153006.10376.69540527.88160-0.486803.117401.55010K562LIN28B
SREK1IP1ENSG00000153006.10632.28060812.53160-0.361902.520701.68850K562METAP2
SREK1IP1ENSG00000153006.10630.40390763.64830-0.276602.437001.73250K562NSUN2
SREK1IP1ENSG00000153006.10798.417801112.51570-0.478603.413902.48700K562PPIG
SREK1IP1ENSG00000153006.10815.95100614.539900.408902.239001.56050K562PRPF8
SREK1IP1ENSG00000153006.10300.74890466.70320-0.633904.525703.32610K562PSIP1
SREK1IP1ENSG00000153006.10980.98940675.278900.538706.018405.07070K562PTBP1
SREK1IP1ENSG00000153006.101982.713101387.501600.514905.732704.56220K562PUF60
SREK1IP1ENSG00000153006.101842.745901475.597000.320503.565102.34410K562PUM1
SREK1IP1ENSG00000153006.10286.33250425.77140-0.572403.784102.62200K562RCC2
SREK1IP1ENSG00000153006.10482.96890821.22710-0.765905.122502.70720K562SMN1
SREK1IP1ENSG00000153006.10764.46400598.065500.354002.725501.91310K562SYNCRIP
SREK1IP1ENSG00000153006.10511.19640646.28110-0.338302.115001.40700K562TIA1
SREK1IP1ENSG00000153006.10688.24020500.292700.460002.893301.77200K562U2AF1
SREK1IP1ENSG00000153006.10680.25510516.519500.397203.211202.34800K562U2AF2
SREK1IP1ENSG00000153006.10653.33940809.70930-0.309602.836502.10890K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SREK1IP1 is not available on ENCORE database.





11 RBPs can affect the splicing of SREK1IP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESREK1IP1ENSG00000153006.10chr5-6406080164060948640501416405018964064331640644540.129000.000130.00391includedK562SRSF1
SESREK1IP1ENSG00000153006.10chr5-640501416405018964036883640370276406433164064446-0.226000.000000.00023excludedK562AKAP8L
SESREK1IP1ENSG00000153006.10chr5-640501416405018964036883640370276406433164064512-0.173000.000000.00000excludedK562AQR
SESREK1IP1ENSG00000153006.10chr5-6405014164050189640368836403702764064331640644460.066000.002820.08514includedK562FXR1
SESREK1IP1ENSG00000153006.10chr5-640501416405018964036883640370276406433164064446-0.324000.000000.00000excludedK562PUS1
SESREK1IP1ENSG00000153006.10chr5-640501416405018964036883640370276406433164064446-0.266000.000000.00001excludedK562UTP18
SESREK1IP1ENSG00000153006.10chr5-640501416405018964036883640370276406433164064446-0.308000.000000.00000excludedK562RBM15
SESREK1IP1ENSG00000153006.10chr5-640501416405018964036883640370276406433164064446-0.254000.000000.00000excludedK562AGGF1
SESREK1IP1ENSG00000153006.10chr5-640501416405018964036883640370276406433164064446-0.092000.000900.08245excludedK562CPSF6
SESREK1IP1ENSG00000153006.10chr5-640501416405018964036883640370276406433164064446-0.113000.000180.01077excludedK562SF3B1
SESREK1IP1ENSG00000153006.10chr5-6405014164050189640368836403702764064331640644460.075000.000260.01399includedK562PTBP1
A3SSSREK1IP1ENSG00000153006.10chr5-6403696264037064640369626403702764050141640502930.051000.000010.00013longerK562AQR
MXESREK1IP1ENSG00000153006.10chr5-6405044964050597640608016406094864050141640501896406433164064476-0.311000.016920.096292includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SREK1IP1 is not avaliable on ENCORE database.