SOAT1

General Information

Gene Name       : SOAT1
Gene ID             : ENSG00000057252.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SOAT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SOAT1ENSG00000057252.1220.9820.8020.89ENCSR000AEF
HepG2SOAT1ENSG00000057252.1222.0333.2227.62ENCSR985KAT
K562SOAT1ENSG00000057252.1218.3815.5316.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SOAT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SOAT1 RNA is bound by 11 proteins.  







eCLIP assay for SOAT1 is not avaliable on ENCORE database.





11 proteins are bound to SOAT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1179310149179310200+3'-UTR,CDS,intron-Proximal3.767665.76944HepG2U2AF2
chr1179326961179327057+3'-UTR4.460248.31857HepG2UPF1
chr1179322874179322965+3'-UTR3.328133.69775K562YBX3
chr1179323947179324019+3'-UTR4.215653.46495K562TARDBP
chr1179325998179326014+3'-UTR4.5984710.58184K562UPF1
chr1179326050179326096+3'-UTR5.5904510.81337K562UPF1
chr1179325847179325901+3'-UTR4.511093.78860K562AKAP1
chr1179310148179310199+3'-UTR,CDS,intron-Proximal3.724727.52752K562U2AF2
chr1179322981179323027+3'-UTR3.008273.63497HepG2TIA1
chr1179325682179325722+3'-UTR3.903484.82552K562UPF1
chr1179326014179326043+3'-UTR5.0323714.07248K562UPF1
chr1179322980179323039+3'-UTR4.796399.57419HepG2FAM120A
chr1179325852179325887+3'-UTR4.6391913.57997K562UPF1
chr1179325843179325852+3'-UTR5.8263111.61967K562UPF1
chr1179326351179326402+3'-UTR4.3945111.39836K562UPF1
chr1179262942179262999+5'-UTR4.766236.05264HepG2DDX3X
chr1179271821179271928+5'-UTR,CDS,intron-Distal3.272905.23038K562ZNF622
chr1179262972179263072+5'-UTR,intron-Proximal4.401107.22925K562DDX3X
chr1179262999179263074+5'-UTR,intron-Proximal4.0235210.68796HepG2DDX3X
chr1179316747179316834+CDS,intron-Proximal4.292497.07351K562SND1
chr1179317976179318058+CDS,intron-Proximal4.908426.80295K562SND1
chr1179319430179319529+CDS,intron-Proximal5.113717.19329K562SND1
chr1179311269179311326+CDS3.183683.20659K562SND1
chr1179270593179270692+intron-Distal3.728783.16028HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SOAT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SOAT1 is not available on ENCORE database.

  • 73 RBPs can affect the levels of SOAT1.  








The Knockdown/knockout RNA-Seq assay for SOAT1 is not available on ENCORE database.





73 RBPs can affect the gene expression of SOAT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SOAT1ENSG00000057252.8996.94200757.388200.396402.996401.88570HepG2AATF
SOAT1ENSG00000057252.8809.957101152.93090-0.509408.345207.40450HepG2ACO1
SOAT1ENSG00000057252.81120.470101773.48190-0.6625015.0949013.71730HepG2AUH
SOAT1ENSG00000057252.8838.847701105.73190-0.398503.118202.48720HepG2BOP1
SOAT1ENSG00000057252.81462.788801072.066500.448202.901502.11370HepG2CALR
SOAT1ENSG00000057252.8495.447101380.85000-1.4788021.9208019.41740HepG2CCAR1
SOAT1ENSG00000057252.81884.093101480.862400.347302.627001.87240HepG2CIRBP
SOAT1ENSG00000057252.8949.954501152.70440-0.279103.165702.46460HepG2CKAP4
SOAT1ENSG00000057252.81311.23660783.821300.742205.043804.00660HepG2CNOT7
SOAT1ENSG00000057252.81183.374601409.38230-0.252202.395201.78930HepG2CELF1
SOAT1ENSG00000057252.81211.97370835.985200.535705.486804.56550HepG2DDX21
SOAT1ENSG00000057252.81215.79060817.780400.572006.807505.38240HepG2DDX24
SOAT1ENSG00000057252.8673.047101136.07970-0.755303.558702.69530HepG2DDX55
SOAT1ENSG00000057252.8820.830701549.97620-0.9171010.722809.59740HepG2DDX6
SOAT1ENSG00000057252.81655.846601103.048600.5860011.5405010.35530HepG2DKC1
SOAT1ENSG00000057252.8760.82850892.04460-0.229502.061001.48220HepG2DNAJC2
SOAT1ENSG00000057252.8508.76870816.95160-0.683207.611805.78560HepG2EIF2S2
SOAT1ENSG00000057252.8988.49660789.256000.324602.448601.43180HepG2EIF3G
SOAT1ENSG00000057252.81239.883401603.38400-0.370901.913701.33450HepG2EIF4B
SOAT1ENSG00000057252.81373.25610932.870500.557805.968004.42470HepG2ESF1
SOAT1ENSG00000057252.81438.553901126.640800.352503.211702.31300HepG2EWSR1
SOAT1ENSG00000057252.8191.55310697.65000-1.8648018.8294016.86100HepG2FUBP3
SOAT1ENSG00000057252.8212.47160908.65190-2.0965047.3882045.40080HepG2HNRNPA1
SOAT1ENSG00000057252.81067.134601560.41820-0.548205.695604.72210HepG2HNRNPK
SOAT1ENSG00000057252.81082.296501380.49860-0.351105.221504.32030HepG2HNRNPL
SOAT1ENSG00000057252.82090.586001098.208500.9287015.0655013.76270HepG2HNRNPLL
SOAT1ENSG00000057252.8716.290701004.01360-0.487206.589605.68890HepG2HNRNPU
SOAT1ENSG00000057252.8523.64530854.32660-0.706205.364903.67890HepG2HSPD1
SOAT1ENSG00000057252.82100.695701566.846700.422903.638602.87400HepG2IGF2BP2
SOAT1ENSG00000057252.8609.207601025.56870-0.7514016.9245015.29100HepG2ILF2
SOAT1ENSG00000057252.8985.951801575.87220-0.676605.541204.07230HepG2KHSRP
SOAT1ENSG00000057252.82314.000201671.369200.469303.820703.08900HepG2MATR3
SOAT1ENSG00000057252.81260.860601502.74250-0.253202.238001.55210HepG2NOL12
SOAT1ENSG00000057252.8400.705801042.78760-1.379809.942607.83560HepG2NONO
SOAT1ENSG00000057252.8726.71450993.81710-0.451605.581604.43700HepG2PARN
SOAT1ENSG00000057252.8358.61460876.85510-1.289907.953706.66810HepG2PRPF8
SOAT1ENSG00000057252.81953.678101174.338400.7342021.3893019.97150HepG2PUS1
SOAT1ENSG00000057252.81182.016901628.68660-0.462506.269705.38330HepG2QKI
SOAT1ENSG00000057252.8945.132001317.68470-0.479405.068603.95200HepG2RBM15
SOAT1ENSG00000057252.8923.495301701.86090-0.8819021.4220020.25400HepG2RBM22
SOAT1ENSG00000057252.8560.223801010.05130-0.850407.475405.74780HepG2RCC2
SOAT1ENSG00000057252.8711.441201051.63480-0.563804.591801.98320HepG2RPL23A
SOAT1ENSG00000057252.8415.16410617.14800-0.571902.363401.79080HepG2RPS19
SOAT1ENSG00000057252.81098.60190786.624000.481802.863402.04910HepG2RPS3A
SOAT1ENSG00000057252.8616.54920894.12580-0.536307.726906.73090HepG2SAFB2
SOAT1ENSG00000057252.8850.370001042.71420-0.294203.363202.66530HepG2SMN1
SOAT1ENSG00000057252.81040.232801922.20160-0.8859028.8199027.64550HepG2SRFBP1
SOAT1ENSG00000057252.82147.426301634.200500.393906.557505.90450HepG2SRSF1
SOAT1ENSG00000057252.8832.176801169.58120-0.491003.214902.12720HepG2SRSF3
SOAT1ENSG00000057252.8984.149001329.48820-0.433906.789705.99350HepG2SRSF9
SOAT1ENSG00000057252.82304.448901668.947600.465409.892209.03750HepG2SSB
SOAT1ENSG00000057252.8794.038001070.29700-0.430703.399202.60470HepG2TARDBP
SOAT1ENSG00000057252.8682.27030984.30480-0.528807.906407.03090HepG2TRIM56
SOAT1ENSG00000057252.81360.676901179.927600.205502.023801.41040HepG2UPF1
SOAT1ENSG00000057252.8882.667401139.17600-0.368004.344203.62090HepG2UTP3
SOAT1ENSG00000057252.8731.87110955.83770-0.385202.784901.55690K562ABCF1
SOAT1ENSG00000057252.8717.363401046.80400-0.545205.080404.32760K562AQR
SOAT1ENSG00000057252.8122.53570265.91100-1.117707.419505.47350K562CCAR1
SOAT1ENSG00000057252.8549.66670804.89420-0.550203.467701.82730K562CKAP4
SOAT1ENSG00000057252.8345.53710481.10990-0.477503.240702.08650K562CSTF2
SOAT1ENSG00000057252.81179.518401432.89910-0.280702.189701.32340K562CELF1
SOAT1ENSG00000057252.8772.06340928.44750-0.266102.211901.61910K562DDX47
SOAT1ENSG00000057252.8351.90740537.98940-0.612406.154304.30960K562EIF4B
SOAT1ENSG00000057252.8387.66770521.46920-0.427803.110101.72330K562EWSR1
SOAT1ENSG00000057252.8416.27340563.59130-0.437103.530501.48570K562FUBP3
SOAT1ENSG00000057252.8792.51590621.273600.351102.994202.36810K562FXR1
SOAT1ENSG00000057252.8823.03540556.850400.563603.636402.80020K562G3BP2
SOAT1ENSG00000057252.8436.73050615.33560-0.494604.415502.97760K562GLRX3
SOAT1ENSG00000057252.8322.19080709.91460-1.1397018.1819015.78140K562HNRNPA1
SOAT1ENSG00000057252.8710.30540931.51820-0.391102.866102.05690K562HSPD1
SOAT1ENSG00000057252.8262.99490448.23950-0.769204.509303.28440K562KRR1
SOAT1ENSG00000057252.8560.41850425.672200.396702.768001.96580K562POLR2G
SOAT1ENSG00000057252.8549.37310779.88920-0.505504.167103.13340K562PPIG
SOAT1ENSG00000057252.8313.96990426.71600-0.442702.117401.33650K562PSIP1
SOAT1ENSG00000057252.81706.738501352.455300.335603.502902.29350K562PUM1
SOAT1ENSG00000057252.8283.93760389.25020-0.455102.502501.56340K562RCC2
SOAT1ENSG00000057252.8567.33290802.00330-0.499403.981802.63680K562NELFE
SOAT1ENSG00000057252.8513.23540379.288400.436202.717101.64670K562SAFB
SOAT1ENSG00000057252.8303.62050470.14670-0.630803.250601.54820K562SERBP1
SOAT1ENSG00000057252.8580.50070824.54460-0.506303.760302.26530K562STAU1
SOAT1ENSG00000057252.8572.05610788.50890-0.463003.476502.67970K562TARDBP
SOAT1ENSG00000057252.8324.51250435.95630-0.425902.290201.44230K562TRIM56
SOAT1ENSG00000057252.8740.71960539.966800.456002.402601.39420K562U2AF1
SOAT1ENSG00000057252.8458.75280762.14540-0.7323011.235809.90800K562UPF1
SOAT1ENSG00000057252.8957.969501179.37170-0.300002.232201.46860K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SOAT1 is not available on ENCORE database.





3 RBPs can affect the splicing of SOAT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESOAT1ENSG00000057252.8chr1+179308572179308680179306971179307031179310162179310445-0.123000.001460.02323excludedK562PUS1
A3SSSOAT1ENSG00000057252.8chr1+1793194111793195661793194301793195661793179781793180770.132000.000070.00065longerK562AQR
A3SSSOAT1ENSG00000057252.8chr1+1793111441793113271793112481793113271793101621793104450.142000.000000.00002longerK562AQR
MXESOAT1ENSG00000057252.8chr1+1792718111792719371793046401793047921792629311792630711793069711793070310.121000.002330.063731includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SOAT1 is not avaliable on ENCORE database.