SLC39A11

General Information

Gene Name       : SLC39A11
Gene ID             : ENSG00000133195.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC39A11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC39A11ENSG00000133195.115.157.446.29ENCSR000AEF
HepG2SLC39A11ENSG00000133195.1110.099.599.84ENCSR985KAT
K562SLC39A11ENSG00000133195.117.989.008.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC39A11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC39A11 RNA is bound by 22 proteins.  







eCLIP assay for SLC39A11 is not avaliable on ENCORE database.





22 proteins are bound to SLC39A11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177064327570643346-3'-UTR,intron-Distal4.060017.35773HepG2UPF1
chr177084578470845926-3'-UTR,CDS,intron-Distal,intron-Proximal3.446154.07434HepG2SND1
chr177064297370643089-3'-UTR,intron-Distal4.545377.89119K562UPF1
chr177064254770642627-3'-UTR,intron-Distal4.870307.10674HepG2UPF1
chr177064318370643275-3'-UTR,intron-Distal,intron-Proximal4.739965.35992HepG2UPF1
chr177084571770845780-3'-UTR,CDS,intron-Distal,intron-Proximal3.176913.20886K562PRPF8
chr177084573070845790-3'-UTR,CDS,intron-Distal,intron-Proximal4.4561615.11890HepG2PRPF8
chr177064337470643434-3'-UTR,intron-Distal3.565994.81659HepG2UPF1
chr177084584870845945-3'-UTR,CDS,intron-Distal,intron-Proximal3.5773610.41365HepG2PPIG
chr177108487871084914-3'-UTR,5'-UTR,CDS,intron-Distal4.217416.64430HepG2PPIG
chr177064324370643340-3'-UTR,intron-Distal,intron-Proximal4.527875.58306HepG2AKAP1
chr177084574070845896-3'-UTR,CDS,intron-Distal,intron-Proximal3.933243.25843K562SRSF1
chr177064299670643084-3'-UTR,intron-Distal5.172498.87118HepG2UPF1
chr177108874771088813-5'-UTR,intron-Distal3.186455.78238HepG2PPIG
chr177094398370944016-CDS,intron-Distal,intron-Proximal3.485236.00907HepG2PPIG
chr177094385270943959-CDS,intron-Distal,intron-Proximal3.9449212.07556HepG2PPIG
chr177064495870645101-CDS,intron-Distal,intron-Proximal3.476164.08796K562SND1
chr177108094471080987-CDS,intron-Distal,intron-Proximal3.577369.28206HepG2PPIG
chr177102768971027728-CDS,intron-Distal,intron-Proximal3.468226.93667HepG2PPIG
chr177092720270927317-intron-Distal4.2879310.52355HepG2MATR3
chr177094341270943469-intron-Distal3.753456.70098HepG2HNRNPC
chr177081758770817650-intron-Distal,intron-Proximal3.866106.70098HepG2HNRNPC
chr177068975470689814-intron-Distal3.751135.28337HepG2HNRNPM
chr177092908270929137-intron-Distal4.189933.60235HepG2HNRNPM
chr177100253871002638-intron-Distal4.503638.48623HepG2PCBP2
chr177082683670826908-intron-Distal3.638504.84410HepG2SUGP2
chr177089606170896156-intron-Distal6.1830615.14484K562PTBP1
chr177088689970887011-intron-Distal3.453843.00914HepG2PTBP1
chr177078003370780081-intron-Distal3.919643.90822HepG2HNRNPM
chr177082690970826953-intron-Distal3.059523.23296HepG2SUGP2
chr177075083670750901-intron-Distal4.282053.65854HepG2RBFOX2
chr177066018570660240-intron-Distal7.3597061.03335K562LARP7
chr177092720870927341-intron-Distal4.146787.83927K562MATR3
chr177082554170825669-intron-Distal4.174134.36307HepG2HNRNPK
chr177081389270813967-intron-Distal,intron-Proximal3.826623.29239HepG2CSTF2
chr177075076770750836-intron-Distal4.7759613.82570HepG2RBFOX2
chr177091815670918325-intron-Distal4.6631413.41842HepG2HNRNPM
chr177100023471000267-intron-Distal4.772565.31323HepG2PTBP1
chr177082728270827332-intron-Distal3.182983.08928HepG2MATR3
chr177066006570660134-intron-Distal8.12070133.06735K562LARP7
chr177090498870905106-intron-Distal4.301124.31871HepG2HNRNPM
chr177081571270815801-intron-Distal4.030843.27946HepG2HNRNPM
chr177089477970894860-intron-Distal4.657636.49093K562TARDBP
chr177066016870660245-intron-Distal5.4339615.51574HepG2LARP7
chr177066008570660136-intron-Distal3.296213.97517HepG2DGCR8
chr177102227371022324-intron-Distal4.8945811.52400K562PTBP1
chr177072391670723984-intron-Distal3.245023.60809HepG2HNRNPK
chr177089644770896637-intron-Distal4.234898.08956HepG2PCBP2
chr177079276570792855-intron-Distal4.009456.64193HepG2HNRNPM
chr177082684770827046-intron-Distal3.548705.57084HepG2RBFOX2
chr177084133570841387-intron-Distal3.919643.27946HepG2HNRNPM
chr177100021571000234-intron-Distal3.652055.05511HepG2PTBP1
chr177066008570660155-intron-Distal8.2871920.23269HepG2LARP7
chr177106837371068444-intron-Distal,intron-Proximal6.3416411.06447HepG2PCBP2
chr177087046170870531-intron-Distal4.255813.71567HepG2RBFOX2
chr177090887170908984-intron-Distal3.061513.34834HepG2SUGP2
chr177102223271022331-intron-Distal4.5105121.72145HepG2PTBP1
chr177084113470841205-intron-Distal4.526145.37406HepG2HNRNPM
chr177075790570758024-intron-Distal5.7925811.23022HepG2RBFOX2
chr177091817170918269-intron-Distal5.226347.88580K562HNRNPM
chr177075094370751029-intron-Distal5.062308.60555HepG2RBFOX2
chr177092389470924019-intron-Distal4.521135.18738K562TARDBP
chr177092734170927406-intron-Distal4.178854.47026K562MATR3
chr177093891570938978-intron-Distal3.825024.61905HepG2MATR3
chr177081335370813478-intron-Distal5.548879.27589HepG2PCBP2
chr177079459170794699-intron-Distal4.323284.77477HepG2RBFOX2
chr177100021171000263-intron-Distal4.600603.42734K562PTBP1
chr177090959970909730-intron-Distal4.272563.74583HepG2PTBP1
chr177091755870917615-intron-Distal4.964557.79427HepG2PTBP1
chr177082547670825493-intron-Distal3.519085.59048HepG2HNRNPC
chr177091756470917613-intron-Distal5.082345.39854K562PTBP1
chr177108850171088561-intron-Distal3.817923.15816HepG2PRPF4
chr177092729170927383-intron-Distal4.552388.21761HepG2PTBP1
chr177092723170927378-intron-Distal4.2386612.33192K562PTBP1
chr177091041470910449-intron-Distal3.080263.93297HepG2HNRNPC
chr177091664670916764-intron-Distal3.601693.56210K562EIF4G2
chr177094062770940697-intron-Distal3.097133.44195K562TARDBP
chr177082990770829988-intron-Distal3.550864.63118HepG2HNRNPM
chr177065837070658498-intron-Distal5.294039.51434HepG2PTBP1
chr177089403070894204-intron-Distal3.827995.72064HepG2MATR3
chr177092875170928796-intron-Distal4.330574.31871HepG2HNRNPM
chr177066013470660185-intron-Distal7.3844863.78532K562LARP7
chr177089606370896170-intron-Distal5.4997511.24529HepG2PTBP1
chr177078002670780111-intron-Distal3.368963.68462HepG2MATR3
chr177092731770927382-intron-Distal3.625764.83120HepG2MATR3
chr177102573871025794-intron-Distal4.762053.85055HepG2XPO5
chr177072127770721318-intron-Distal3.960633.58660HepG2ILF3
chr177102223071022273-intron-Distal4.187348.27870K562PTBP1
chr177093872470938782-intron-Distal4.184124.07628HepG2PTBP1
chr177092721170927291-intron-Distal4.283868.21761HepG2PTBP1
chr177092803870928125-intron-Distal3.553347.54465HepG2RBFOX2
chr177090301670903127-intron-Distal3.301125.13070HepG2HNRNPM
chr177106845171068503-intron-Distal5.1618710.46790HepG2PCBP2
chr177091751870917579-intron-Distal3.579753.10961HepG2MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC39A11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC39A11 is not available on ENCORE database.

  • 80 RBPs can affect the levels of SLC39A11.  








The Knockdown/knockout RNA-Seq assay for SLC39A11 is not available on ENCORE database.





80 RBPs can affect the gene expression of SLC39A11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC39A11ENSG00000133195.7295.37310470.28130-0.671007.122406.24000HepG2ACO1
SLC39A11ENSG00000133195.7232.85150381.33720-0.711704.165002.96930HepG2ADAR
SLC39A11ENSG00000133195.7347.48550472.53270-0.443503.415802.57520HepG2AKAP8L
SLC39A11ENSG00000133195.71094.05430699.067900.646106.124204.97740HepG2ASCC1
SLC39A11ENSG00000133195.7240.00410375.97890-0.647604.337302.60840HepG2ATP5C1
SLC39A11ENSG00000133195.7498.60840306.488800.702004.449703.33340HepG2BCLAF1
SLC39A11ENSG00000133195.7334.19660221.957000.590303.254402.61190HepG2BOP1
SLC39A11ENSG00000133195.7467.35350349.653900.418502.472801.74040HepG2CALR
SLC39A11ENSG00000133195.7290.23220203.761100.510202.186501.56590HepG2CPSF6
SLC39A11ENSG00000133195.7536.62420343.165000.644904.771803.34560HepG2CPSF7
SLC39A11ENSG00000133195.7524.91870391.044000.424703.126502.04300HepG2YBX3
SLC39A11ENSG00000133195.7393.40640571.10840-0.537705.010504.19260HepG2CELF1
SLC39A11ENSG00000133195.7367.48870475.06500-0.370402.065301.46950HepG2DDX21
SLC39A11ENSG00000133195.7199.58730350.22610-0.811306.308604.37390HepG2DDX52
SLC39A11ENSG00000133195.71042.91520695.275000.584904.422903.65630HepG2DDX6
SLC39A11ENSG00000133195.7346.60340449.94480-0.376502.449801.80610HepG2DKC1
SLC39A11ENSG00000133195.7156.46480384.00940-1.2953015.8743014.32180HepG2DNAJC21
SLC39A11ENSG00000133195.7387.70350668.33440-0.785606.830205.92650HepG2EIF2S1
SLC39A11ENSG00000133195.7506.37500719.14190-0.506102.603201.93410HepG2EIF4B
SLC39A11ENSG00000133195.71048.30200711.569100.558907.356106.45430HepG2ETF1
SLC39A11ENSG00000133195.7303.06450420.94320-0.474002.229501.53450HepG2FIP1L1
SLC39A11ENSG00000133195.7341.15870691.29320-1.0189010.731309.46420HepG2G3BP1
SLC39A11ENSG00000133195.7154.96230302.05880-0.962906.615805.23180HepG2GEMIN5
SLC39A11ENSG00000133195.7316.84450464.58270-0.552203.248702.14150HepG2GNB2L1
SLC39A11ENSG00000133195.7330.39510230.958700.516502.262501.68060HepG2GPKOW
SLC39A11ENSG00000133195.7575.45970449.014600.357902.835901.84670HepG2HDGF
SLC39A11ENSG00000133195.7786.40120564.360900.478505.211103.99590HepG2HNRNPA2B1
SLC39A11ENSG00000133195.7213.76140431.21480-1.012408.904007.71290HepG2HNRNPC
SLC39A11ENSG00000133195.7478.07240220.410001.1169010.566309.43050HepG2HNRNPLL
SLC39A11ENSG00000133195.7161.92960659.48160-2.0260011.702709.80720HepG2IGF2BP3
SLC39A11ENSG00000133195.7352.71010437.56350-0.311001.987001.35300HepG2ILF2
SLC39A11ENSG00000133195.7522.05130745.51400-0.514003.540602.79760HepG2MAGOH
SLC39A11ENSG00000133195.7368.18640749.67460-1.0258010.322609.16600HepG2MATR3
SLC39A11ENSG00000133195.7365.45260224.834200.700703.136802.10020HepG2MTPAP
SLC39A11ENSG00000133195.7399.59100285.980800.482502.647701.45930HepG2NAA15
SLC39A11ENSG00000133195.7560.78260767.32390-0.452402.805602.16840HepG2NCBP2
SLC39A11ENSG00000133195.7366.56940195.450400.907206.455805.33860HepG2NSUN2
SLC39A11ENSG00000133195.7359.34130687.92960-0.936909.303708.29740HepG2PCBP1
SLC39A11ENSG00000133195.7608.55070335.342000.8596012.0098010.56460HepG2PRPF4
SLC39A11ENSG00000133195.7312.93260533.91840-0.770804.590403.04990HepG2PRPF6
SLC39A11ENSG00000133195.7410.49150700.05060-0.770108.490707.64150HepG2PTBP1
SLC39A11ENSG00000133195.7437.90150617.04480-0.494805.391004.61940HepG2PUM1
SLC39A11ENSG00000133195.7702.55480479.019400.552406.850005.95590HepG2PUS1
SLC39A11ENSG00000133195.7585.21870758.05170-0.373302.744602.12210HepG2QKI
SLC39A11ENSG00000133195.7884.90110688.026100.363002.912102.22280HepG2RBM25
SLC39A11ENSG00000133195.7443.17540779.04220-0.8138010.139309.22480HepG2NELFE
SLC39A11ENSG00000133195.7238.38470330.08850-0.469602.403901.82630HepG2RPS19
SLC39A11ENSG00000133195.7350.21470506.15750-0.531303.301602.42690HepG2RPS2
SLC39A11ENSG00000133195.7299.95530424.39840-0.500702.315301.58120HepG2RPS3A
SLC39A11ENSG00000133195.7380.23950516.67010-0.442302.429401.42570HepG2RPS5
SLC39A11ENSG00000133195.7106.42390264.61360-1.314108.750007.45650HepG2RRP9
SLC39A11ENSG00000133195.7530.31970381.487600.475104.348503.57250HepG2SAFB2
SLC39A11ENSG00000133195.7236.23830331.31510-0.488002.414001.53370HepG2SERBP1
SLC39A11ENSG00000133195.7301.85690218.150500.468402.043701.43220HepG2SF3B1
SLC39A11ENSG00000133195.7123.36100300.36640-1.283803.476001.80310HepG2SFPQ
SLC39A11ENSG00000133195.7751.73190557.346400.431504.852503.96400HepG2SLBP
SLC39A11ENSG00000133195.7550.68110242.735001.181708.842807.45430HepG2SNRNP70
SLC39A11ENSG00000133195.7351.28230671.71170-0.9352015.5042014.57180HepG2SRFBP1
SLC39A11ENSG00000133195.7228.90620760.68990-1.7326028.1166026.95630HepG2SRSF1
SLC39A11ENSG00000133195.7476.54590618.89740-0.377103.034502.46200HepG2SRSF9
SLC39A11ENSG00000133195.7411.58180583.17780-0.502805.044704.39270HepG2SSB
SLC39A11ENSG00000133195.7499.88920652.70680-0.384803.516602.83090HepG2SUCLG1
SLC39A11ENSG00000133195.7538.71770683.85250-0.344202.471501.93800HepG2TAF15
SLC39A11ENSG00000133195.7369.16980214.885600.780603.147802.37960HepG2TARDBP
SLC39A11ENSG00000133195.7649.83220419.953600.629707.962607.08410HepG2TRIM56
SLC39A11ENSG00000133195.7443.42870567.87600-0.356902.139301.37840HepG2TUFM
SLC39A11ENSG00000133195.7138.76290203.93960-0.555502.293801.60170HepG2UCHL5
SLC39A11ENSG00000133195.7418.51820325.021300.364702.361401.70770HepG2UPF1
SLC39A11ENSG00000133195.7450.96550334.067700.432803.035301.94270HepG2UTP18
SLC39A11ENSG00000133195.7170.61110313.79360-0.879107.344706.44600HepG2UTP3
SLC39A11ENSG00000133195.7197.21330330.95410-0.746906.348205.40000HepG2ZC3H8
SLC39A11ENSG00000133195.7594.82900357.459600.7346010.451809.55990HepG2ZNF622
SLC39A11ENSG00000133195.7339.97740489.79730-0.526702.707301.42920HepG2ZRANB2
SLC39A11ENSG00000133195.7194.91570320.42300-0.717104.013803.33240K562AQR
SLC39A11ENSG00000133195.7361.43080243.929000.567203.994403.15470K562EIF2S2
SLC39A11ENSG00000133195.7447.29770325.067000.460402.637401.89870K562GRSF1
SLC39A11ENSG00000133195.7329.88210204.936400.686704.097403.13520K562HSPD1
SLC39A11ENSG00000133195.7150.95760227.18230-0.589702.958001.71620K562IGF2BP3
SLC39A11ENSG00000133195.7123.23390234.20930-0.926406.185304.72600K562MATR3
SLC39A11ENSG00000133195.7137.44840229.44810-0.739304.265502.55970K562PCBP1
SLC39A11ENSG00000133195.7157.12370228.02730-0.537302.640101.98900K562PTBP1
SLC39A11ENSG00000133195.7131.15700186.97640-0.511601.985001.51070K562PUS1
SLC39A11ENSG00000133195.778.04120188.65950-1.273504.722902.82890K562SFPQ
SLC39A11ENSG00000133195.7147.65330223.55070-0.598402.747902.04290K562SRSF1
SLC39A11ENSG00000133195.787.48500159.89700-0.870003.614601.78110K562TBRG4
SLC39A11ENSG00000133195.768.78900148.71320-1.112304.838503.30780K562U2AF1
SLC39A11ENSG00000133195.754.71510153.56240-1.488808.969307.51410K562U2AF2
SLC39A11ENSG00000133195.7330.86130225.898800.550503.570502.76220K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC39A11 is not available on ENCORE database.





2 RBPs can affect the splicing of SLC39A11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC39A11ENSG00000133195.7chr17-710879627108807571084795710849147108874971088820-0.098000.000270.02213excludedHepG2AKAP1
SESLC39A11ENSG00000133195.7chr17-710879627108825571084826710849147108874971088851-0.107000.000510.04313excludedHepG2DDX3X
A5SSSLC39A11ENSG00000133195.7chr17-709438697094401470943890709440147084577270845943-0.284000.000030.00939shorterHepG2DDX3X
A5SSSLC39A11ENSG00000133195.7chr17-709438697094401470943890709440147084577270845943-0.272000.000050.01296shorterHepG2AKAP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC39A11 is not avaliable on ENCORE database.