SLC36A4

General Information

Gene Name       : SLC36A4
Gene ID             : ENSG00000180773.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC36A4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC36A4ENSG00000180773.144.853.574.21ENCSR000AEF
HepG2SLC36A4ENSG00000180773.146.5810.178.38ENCSR985KAT
K562SLC36A4ENSG00000180773.145.645.365.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC36A4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC36A4 RNA is bound by 5 proteins.  







eCLIP assay for SLC36A4 is not avaliable on ENCORE database.





5 proteins are bound to SLC36A4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr119291484092914921-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.491343.68471HepG2BCLAF1
chr119293098192931107-5'-UTR,CDS,intron-Distal,intron-Proximal3.419678.37224HepG2NCBP2
chr119293104892931118-5'-UTR,intron-Distal,intron-Proximal4.227826.13654HepG2DDX3X
chr119291599792916076-5'-UTR,CDS,intron-Distal,intron-Proximal4.466598.65151HepG2U2AF2
chr119290124992901373-CDS,intron-Distal,intron-Proximal4.540373.35169HepG2U2AF2
chr119288192292882013-CDS,intron-Distal3.346093.55754HepG2U2AF2
chr119289598592896043-CDS,intron-Distal,intron-Proximal4.422593.89826HepG2BCLAF1
chr119290531092905399-intron-Distal4.163115.25203HepG2CSTF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC36A4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC36A4 is not available on ENCORE database.

  • 80 RBPs can affect the levels of SLC36A4.  








The Knockdown/knockout RNA-Seq assay for SLC36A4 is not available on ENCORE database.





80 RBPs can affect the gene expression of SLC36A4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC36A4ENSG00000180773.10332.21570495.50040-0.576805.308704.27950HepG2AKAP8L
SLC36A4ENSG00000180773.10816.62410644.724800.340902.291801.65720HepG2AUH
SLC36A4ENSG00000180773.10238.81320359.06990-0.588403.523302.14200HepG2BUD13
SLC36A4ENSG00000180773.10520.20800679.05680-0.384402.196501.50280HepG2CIRBP
SLC36A4ENSG00000180773.10397.82350493.09250-0.309702.148701.55200HepG2CKAP4
SLC36A4ENSG00000180773.10465.66580641.75660-0.462704.345103.57240HepG2CELF1
SLC36A4ENSG00000180773.10486.03660690.10900-0.505806.380705.32090HepG2DAZAP1
SLC36A4ENSG00000180773.10619.23200374.429900.725703.546902.44330HepG2DDX59
SLC36A4ENSG00000180773.10246.30100408.84040-0.731107.773406.75250HepG2DNAJC2
SLC36A4ENSG00000180773.10505.44810683.34950-0.435102.601602.02670HepG2EIF2S1
SLC36A4ENSG00000180773.10256.82580363.55520-0.501402.837501.65130HepG2EIF2S2
SLC36A4ENSG00000180773.10290.95720755.21380-1.3761017.5037015.90790HepG2EIF4A3
SLC36A4ENSG00000180773.10386.03350735.24490-0.929507.233106.15020HepG2EIF4B
SLC36A4ENSG00000180773.10553.39810740.17180-0.419503.370902.71710HepG2ETF1
SLC36A4ENSG00000180773.10468.96410315.520600.571603.431602.02400HepG2FKBP4
SLC36A4ENSG00000180773.10237.69670366.25400-0.623704.112603.16230HepG2FUBP3
SLC36A4ENSG00000180773.10429.10530761.88130-0.828208.044806.91240HepG2FXR1
SLC36A4ENSG00000180773.10447.09130706.80800-0.660705.153504.25760HepG2G3BP1
SLC36A4ENSG00000180773.10348.52530495.69750-0.508202.873501.83420HepG2GNB2L1
SLC36A4ENSG00000180773.10252.64860373.77330-0.565002.817402.17160HepG2GPKOW
SLC36A4ENSG00000180773.10254.94520416.48780-0.708105.064404.22500HepG2HNRNPA1
SLC36A4ENSG00000180773.10261.25520463.24810-0.826306.734205.69140HepG2HNRNPC
SLC36A4ENSG00000180773.10504.97670715.58710-0.502903.596902.80680HepG2HNRNPK
SLC36A4ENSG00000180773.10243.05620356.69860-0.553402.784102.15290HepG2HNRNPLL
SLC36A4ENSG00000180773.10239.01730460.18660-0.9451012.0370010.84530HepG2HNRNPU
SLC36A4ENSG00000180773.10484.77440718.47320-0.567604.217903.40000HepG2IGF2BP2
SLC36A4ENSG00000180773.10326.88100470.06840-0.524105.303104.31320HepG2ILF2
SLC36A4ENSG00000180773.10391.30370734.56830-0.908602.365901.60200HepG2LARP4
SLC36A4ENSG00000180773.10456.45720762.14680-0.739606.496305.50190HepG2MAGOH
SLC36A4ENSG00000180773.10445.01060766.42840-0.784306.584705.64360HepG2MATR3
SLC36A4ENSG00000180773.10395.95460784.49500-0.9864010.547409.35080HepG2NCBP2
SLC36A4ENSG00000180773.10523.98320684.30730-0.385103.181402.36570HepG2NOL12
SLC36A4ENSG00000180773.10215.58220347.98970-0.690802.385701.37590HepG2NONO
SLC36A4ENSG00000180773.10540.15120698.70340-0.371302.053801.42370HepG2PABPC4
SLC36A4ENSG00000180773.10438.62320678.01260-0.628307.799806.86310HepG2PCBP1
SLC36A4ENSG00000180773.10193.94860277.18570-0.515202.693301.47910HepG2PKM
SLC36A4ENSG00000180773.10366.13560689.89080-0.9140013.6701012.63590HepG2PTBP1
SLC36A4ENSG00000180773.10835.15400653.213700.354402.393701.83330HepG2PUF60
SLC36A4ENSG00000180773.10280.05390502.27310-0.842808.655507.66800HepG2PUS1
SLC36A4ENSG00000180773.10474.51820747.19520-0.655007.484506.53250HepG2QKI
SLC36A4ENSG00000180773.101002.23830528.557800.923006.211905.17940HepG2RAVER1
SLC36A4ENSG00000180773.101230.16650618.658900.9915021.9174020.74040HepG2RBM22
SLC36A4ENSG00000180773.10428.52590585.53500-0.450402.608501.64630HepG2RBM27
SLC36A4ENSG00000180773.10264.60850475.47950-0.845506.236804.64320HepG2RCC2
SLC36A4ENSG00000180773.10573.75060767.79250-0.420303.927503.30380HepG2NELFE
SLC36A4ENSG00000180773.10563.09410715.07560-0.344702.866402.24080HepG2RECQL
SLC36A4ENSG00000180773.10210.77510326.16020-0.629903.908603.18950HepG2RPS19
SLC36A4ENSG00000180773.10367.23310540.03290-0.556403.595202.68690HepG2RPS2
SLC36A4ENSG00000180773.10345.41270551.24080-0.674404.944203.49230HepG2RPS5
SLC36A4ENSG00000180773.10397.93030289.339700.459702.252101.53560HepG2RRP9
SLC36A4ENSG00000180773.10336.38630574.72830-0.772803.302001.63090HepG2RTF1
SLC36A4ENSG00000180773.10173.76150327.32270-0.913606.261704.86140HepG2SERBP1
SLC36A4ENSG00000180773.10507.83190718.28760-0.500205.276704.50530HepG2SF3B4
SLC36A4ENSG00000180773.10309.18800477.94490-0.628406.709305.77650HepG2SMN1
SLC36A4ENSG00000180773.101138.23900698.774000.7038014.0501013.15310HepG2SRFBP1
SLC36A4ENSG00000180773.10553.26590749.72770-0.438404.478403.91270HepG2SRSF1
SLC36A4ENSG00000180773.10433.90730644.92870-0.571806.441005.54070HepG2SRSF5
SLC36A4ENSG00000180773.10732.64610609.935600.264401.999701.51590HepG2SRSF9
SLC36A4ENSG00000180773.10405.96180733.48270-0.8534014.5750013.33010HepG2SUCLG1
SLC36A4ENSG00000180773.10303.84040447.22320-0.557704.224003.63460HepG2TIAL1
SLC36A4ENSG00000180773.10332.47360451.15030-0.440403.361002.75290HepG2TRIM56
SLC36A4ENSG00000180773.10501.55720675.42700-0.429402.346901.58080HepG2UBE2L3
SLC36A4ENSG00000180773.10417.06240531.25040-0.349102.653301.96660HepG2UPF1
SLC36A4ENSG00000180773.10319.04970512.90320-0.684907.192606.30280HepG2UTP3
SLC36A4ENSG00000180773.10774.12840584.275500.405804.692804.02860HepG2ZNF622
SLC36A4ENSG00000180773.1056.97420146.26280-1.360207.028206.18360K562AGGF1
SLC36A4ENSG00000180773.10100.02290152.18970-0.605502.153801.57460K562AKAP8L
SLC36A4ENSG00000180773.10123.13320304.11780-1.304408.659007.71530K562AQR
SLC36A4ENSG00000180773.1080.99800175.41880-1.114805.432404.19750K562BOP1
SLC36A4ENSG00000180773.10120.01810213.44600-0.830603.908602.16000K562BUD13
SLC36A4ENSG00000180773.10107.23650186.52860-0.798603.764202.84990K562CPSF6
SLC36A4ENSG00000180773.1096.61760168.56330-0.802902.808501.51740K562EEF2
SLC36A4ENSG00000180773.1085.87140162.87650-0.923503.974902.86460K562EFTUD2
SLC36A4ENSG00000180773.1081.57770174.41030-1.096205.188603.71340K562EIF3D
SLC36A4ENSG00000180773.10125.79520220.27670-0.808204.215703.15230K562FIP1L1
SLC36A4ENSG00000180773.1090.42680187.26520-1.050304.980804.20250K562HNRNPC
SLC36A4ENSG00000180773.10136.06560249.74540-0.876206.077004.74250K562HNRNPU
SLC36A4ENSG00000180773.10113.24480298.64670-1.3990012.2279010.58890K562HSPD1
SLC36A4ENSG00000180773.10158.30760246.35830-0.638003.739702.88750K562NSUN2
SLC36A4ENSG00000180773.10105.64840178.04300-0.753003.250702.18900K562PCBP2
SLC36A4ENSG00000180773.10107.01050174.19610-0.703002.649501.83740K562PCBP3
SLC36A4ENSG00000180773.1078.26770150.95440-0.947603.904103.27450K562PUS1
SLC36A4ENSG00000180773.1082.55440164.67710-0.996204.072602.41090K562RBM25
SLC36A4ENSG00000180773.10160.74850243.09730-0.596703.139402.27140K562SF3A3
SLC36A4ENSG00000180773.10116.91160180.49750-0.626602.149001.39630K562SF3B4
SLC36A4ENSG00000180773.1080.55740145.14020-0.849403.067801.97440K562SRFBP1
SLC36A4ENSG00000180773.10106.57630190.57210-0.838504.118703.26280K562SRSF1
SLC36A4ENSG00000180773.10100.43600161.48840-0.685202.135201.32430K562TIAL1
SLC36A4ENSG00000180773.10573.80320360.396400.670905.219103.44760K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC36A4 is not available on ENCORE database.





3 RBPs can affect the splicing of SLC36A4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSLC36A4ENSG00000180773.10chr11-9288727392887443928872739288736992895871928960410.183000.002220.05033longerHepG2U2AF2
A5SSSLC36A4ENSG00000180773.10chr11-929159719291606092916000929160609291485692914952-0.340000.000010.01171shorterK562TROVE2
MXESLC36A4ENSG00000180773.10chr11-92901109929013379291396292914047928990839289918292914856929149520.201000.005120.073741includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC36A4 is not avaliable on ENCORE database.