SLC35B3

General Information

Gene Name       : SLC35B3
Gene ID             : ENSG00000124786.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC35B3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC35B3ENSG00000124786.119.598.509.04ENCSR000AEF
HepG2SLC35B3ENSG00000124786.115.3010.087.69ENCSR985KAT
K562SLC35B3ENSG00000124786.118.247.958.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC35B3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC35B3 RNA is bound by 9 proteins.  







eCLIP assay for SLC35B3 is not avaliable on ENCORE database.





9 proteins are bound to SLC35B3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr684355078435598-5'-UTR,CDS,intron-Distal3.127144.48980K562PRPF8
chr684355958435725-5'-UTR,CDS,intron-Distal,intron-Proximal4.386684.55101HepG2PRPF4
chr684356088435759-5'-UTR,CDS,intron-Distal,intron-Proximal3.691306.48236HepG2DDX3X
chr684355088435563-5'-UTR,CDS,intron-Distal4.504595.14756K562RBM15
chr684356008435756-5'-UTR,CDS,intron-Distal,intron-Proximal3.940087.04115K562SRSF1
chr684355088435579-5'-UTR,CDS,intron-Distal3.619066.55814HepG2PRPF8
chr684302218430306-CDS,intron-Distal3.274864.74886HepG2BCLAF1
chr684138698413950-CDS,intron-Distal3.829887.40091HepG2U2AF2
chr684304278430525-intron-Distal,intron-Proximal4.673746.51328K562KHSRP
chr684254318425507-intron-Distal3.416055.20123K562KHSRP
chr684336188433692-intron-Distal3.666003.41489HepG2CSTF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC35B3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC35B3 is not available on ENCORE database.

  • 50 RBPs can affect the levels of SLC35B3.  








The Knockdown/knockout RNA-Seq assay for SLC35B3 is not available on ENCORE database.





50 RBPs can affect the gene expression of SLC35B3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC35B3ENSG00000124786.8575.56760301.075800.9348014.3249013.17270HepG2ACO1
SLC35B3ENSG00000124786.8184.55560265.75960-0.526102.427201.49190HepG2ADAR
SLC35B3ENSG00000124786.8579.81610422.640400.456102.279901.79210HepG2AKAP1
SLC35B3ENSG00000124786.8396.02690302.448000.388802.453301.72610HepG2AKAP8L
SLC35B3ENSG00000124786.8422.81530264.203100.678305.451804.41620HepG2CALR
SLC35B3ENSG00000124786.8449.43850332.237400.435802.180901.48950HepG2CIRBP
SLC35B3ENSG00000124786.8376.61370300.959500.323401.896101.33100HepG2CKAP4
SLC35B3ENSG00000124786.8389.23310213.975300.863106.328705.32070HepG2CPSF6
SLC35B3ENSG00000124786.8505.02490408.144000.307202.000301.43710HepG2CELF1
SLC35B3ENSG00000124786.8210.81690438.82950-1.0577014.1757012.71860HepG2DAZAP1
SLC35B3ENSG00000124786.8518.58180245.600801.0782011.9401010.64720HepG2DDX21
SLC35B3ENSG00000124786.8735.34080404.853600.860908.202607.17690HepG2DDX3X
SLC35B3ENSG00000124786.8470.12680288.034800.706704.454603.63230HepG2DKC1
SLC35B3ENSG00000124786.8224.41050334.32680-0.575102.796002.19920HepG2EIF2S1
SLC35B3ENSG00000124786.8878.58770369.466001.2496015.9780014.45630HepG2EIF4A3
SLC35B3ENSG00000124786.8550.60460359.735400.614003.245602.50340HepG2EIF4B
SLC35B3ENSG00000124786.8201.28460294.15970-0.547402.999302.13250HepG2EWSR1
SLC35B3ENSG00000124786.898.33720161.96080-0.719802.779001.99080HepG2FUBP3
SLC35B3ENSG00000124786.8463.58990300.518600.625302.289601.65370HepG2HNRNPC
SLC35B3ENSG00000124786.8146.23010350.17970-1.2599010.688409.39750HepG2HNRNPK
SLC35B3ENSG00000124786.8177.33690298.53230-0.751405.888005.03170HepG2HNRNPU
SLC35B3ENSG00000124786.8472.03690351.505300.425302.164601.55930HepG2IGF2BP2
SLC35B3ENSG00000124786.8679.70620372.919200.865908.145107.03160HepG2MAGOH
SLC35B3ENSG00000124786.8334.28560211.390700.661104.313403.31620HepG2MSI2
SLC35B3ENSG00000124786.8476.28910377.386900.335702.149501.60300HepG2PCBP1
SLC35B3ENSG00000124786.8139.72330196.61350-0.492802.067101.39020HepG2PRPF4
SLC35B3ENSG00000124786.8459.64860304.322500.594802.836601.60580HepG2PRPF6
SLC35B3ENSG00000124786.8481.98080383.998000.327802.100801.61200HepG2PTBP1
SLC35B3ENSG00000124786.8203.59080415.38990-1.028809.677408.65510HepG2PUF60
SLC35B3ENSG00000124786.8542.88000440.963000.299902.346701.79190HepG2PUM1
SLC35B3ENSG00000124786.8481.01970306.657800.649406.808205.91590HepG2PUS1
SLC35B3ENSG00000124786.8601.28160449.020000.421203.280602.72950HepG2RBM22
SLC35B3ENSG00000124786.8280.01460377.44540-0.430802.346201.71940HepG2RBM25
SLC35B3ENSG00000124786.8597.95920427.358900.484504.110103.47390HepG2NELFE
SLC35B3ENSG00000124786.8421.14780274.388300.618002.968501.99200HepG2RPS10
SLC35B3ENSG00000124786.8470.03000298.941200.652804.538703.52690HepG2RPS2
SLC35B3ENSG00000124786.8448.26430302.996100.565002.836102.02710HepG2RPS3A
SLC35B3ENSG00000124786.8190.45660265.86100-0.481202.621301.99170HepG2SAFB2
SLC35B3ENSG00000124786.8509.76250410.146900.313602.084901.53230HepG2SRSF5
SLC35B3ENSG00000124786.8772.81640440.343500.8114013.6909012.72540HepG2SSB
SLC35B3ENSG00000124786.8344.92070225.603800.612403.522402.71560HepG2TARDBP
SLC35B3ENSG00000124786.8429.58990267.469800.683507.089406.31920HepG2ZNF622
SLC35B3ENSG00000124786.8217.37820390.06920-0.843507.634406.75860K562AGGF1
SLC35B3ENSG00000124786.8289.31100405.88290-0.488402.810302.15180K562AKAP8L
SLC35B3ENSG00000124786.8436.71290239.795000.864807.767006.39180K562EIF4A3
SLC35B3ENSG00000124786.8131.89310209.31240-0.666303.326401.88040K562EWSR1
SLC35B3ENSG00000124786.8329.39580249.375600.401402.073101.53500K562FXR1
SLC35B3ENSG00000124786.8213.62170318.75350-0.577403.369201.75280K562G3BP1
SLC35B3ENSG00000124786.8302.51220149.761301.014207.376106.44760K562HNRNPC
SLC35B3ENSG00000124786.8222.30620333.00760-0.583003.044801.74620K562HNRNPK
SLC35B3ENSG00000124786.8332.53050186.502200.834205.146304.12320K562PRPF8
SLC35B3ENSG00000124786.8237.33470402.53710-0.762205.278504.55960K562PUS1
SLC35B3ENSG00000124786.8280.59850392.20130-0.483102.999602.38680K562RBM15
SLC35B3ENSG00000124786.8219.05940326.46070-0.575603.414102.47530K562RBM22
SLC35B3ENSG00000124786.8145.71460228.08830-0.646403.189301.75440K562RBM25
SLC35B3ENSG00000124786.8290.29060189.968200.611602.827302.00150K562RPS19
SLC35B3ENSG00000124786.8165.35710250.00860-0.596402.974202.08630K562SF3B4
SLC35B3ENSG00000124786.8443.81270671.34440-0.597105.511404.22530K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC35B3 is not available on ENCORE database.





12 RBPs can affect the splicing of SLC35B3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC35B3ENSG00000124786.8chr6-8434617843466384300968430390843546084354850.199000.001160.08495includedHepG2G3BP1
SESLC35B3ENSG00000124786.8chr6-8418976841911884176348417727841981284199100.387000.000720.01588includedK562SRSF1
SESLC35B3ENSG00000124786.8chr6-8434617843466384300968430390843557584357160.195000.004880.07442includedHepG2U2AF1
SESLC35B3ENSG00000124786.8chr6-8434617843466384300968430390843557584357160.266000.000000.00079includedK562FMR1
SESLC35B3ENSG00000124786.8chr6-841763484177278417116841722884209538421040-0.354000.000000.00003excludedK562AQR
SESLC35B3ENSG00000124786.8chr6-842270284228578420953842106184281698428291-0.249000.000000.00005excludedK562AQR
SESLC35B3ENSG00000124786.8chr6-8434617843466384300968430390843557584357160.155000.000530.03722includedHepG2FTO
SESLC35B3ENSG00000124786.8chr6-8422702842285784209538421061842816984282910.165000.000330.04210includedHepG2LARP4
SESLC35B3ENSG00000124786.8chr6-841763484177278417116841722884198128419910-0.167000.005600.09597excludedHepG2SRSF1
SESLC35B3ENSG00000124786.8chr6-841897684191188417634841772784198128419910-0.114000.000690.09443excludedK562EIF4G2
SESLC35B3ENSG00000124786.8chr6-842270284228578420953842106184281698428291-0.338000.000200.01071excludedK562HNRNPU
SESLC35B3ENSG00000124786.8chr6-841981284199108417634841772784209538421061-0.279000.000120.06038excludedHepG2SLTM
SESLC35B3ENSG00000124786.8chr6-8434617843466384300968430390843557584357160.230000.000880.01735includedK562HNRNPC
A3SSSLC35B3ENSG00000124786.8chr6-8428169842839384281698428291843009684303900.158000.000210.00174longerK562AQR
A3SSSLC35B3ENSG00000124786.8chr6-8420953842112384209538421061842270284228570.082000.018810.09048longerK562AQR
MXESLC35B3ENSG00000124786.8chr6-841763484177278419812841991084171168417228842095384210610.281000.000120.005361includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC35B3 is not avaliable on ENCORE database.