RTCA

General Information

Gene Name       : RTCA
Gene ID             : ENSG00000137996.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RTCA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RTCAENSG00000137996.1226.1419.8923.02ENCSR000AEF
HepG2RTCAENSG00000137996.1213.1623.3418.25ENCSR985KAT
K562RTCAENSG00000137996.1224.0125.2124.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RTCA is not avaliable on ENCORE database.



Proteins bound to RNA
  • RTCA RNA is bound by 19 proteins.  







eCLIP assay for RTCA is not avaliable on ENCORE database.





19 proteins are bound to RTCA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1100732179100732225+3'-UTR,CDS,intron-Proximal5.804369.95272K562AQR
chr1100732211100732300+3'-UTR,intron-Distal,intron-Proximal4.9414917.81956K562EFTUD2
chr1100732205100732292+3'-UTR,intron-Distal,intron-Proximal3.389317.15216K562BUD13
chr1100732203100732343+3'-UTR,intron-Distal,intron-Proximal3.6623410.37024K562PRPF8
chr1100732204100732380+3'-UTR,intron-Distal,intron-Proximal6.1040124.37540HepG2EFTUD2
chr1100757254100757302+3'-UTR4.030255.01572HepG2SUB1
chr1100732150100732222+3'-UTR,CDS,intron-Proximal3.255573.71591HepG2PRPF8
chr1100732218100732270+3'-UTR,intron-Proximal3.110913.99124HepG2PPIG
chr1100732189100732294+3'-UTR,intron-Distal,intron-Proximal3.407034.13948HepG2PRPF4
chr1100732225100732292+3'-UTR,intron-Distal,intron-Proximal3.611849.75493K562AQR
chr1100731892100731976+5'-UTR,CDS3.021796.02430HepG2PPIG
chr1100733728100733856+CDS,intron-Proximal3.023533.10677K562SRSF1
chr1100738999100739097+CDS,intron-Proximal4.039364.93376K562PRPF8
chr1100736174100736221+CDS4.337623.89826HepG2BCLAF1
chr1100736126100736232+CDS4.551576.73025HepG2GRWD1
chr1100741086100741203+CDS,intron-Proximal5.592857.41223K562SF3B4
chr1100732048100732099+CDS,intron-Proximal3.584214.25142K562BUD13
chr1100740382100740455+CDS4.568605.66624K562LIN28B
chr1100733718100733786+CDS3.313733.59112HepG2PPIG
chr1100736222100736299+CDS,intron-Proximal3.236704.21588K562PRPF8
chr1100741189100741263+CDS3.912143.25521K562LIN28B
chr1100732097100732178+CDS4.512075.37961K562YBX3
chr1100742819100742875+CDS,intron-Proximal3.215663.18789HepG2BCLAF1
chr1100752804100752899+intron-Distal,intron-Proximal4.469394.21433K562PRPF8
chr1100756819100756891+intron-Distal,intron-Proximal3.742864.36528HepG2U2AF2
chr1100754137100754205+intron-Distal3.006335.56596K562XRCC6
chr1100755280100755299+intron-Distal4.3857618.82484K562KHSRP
chr1100755299100755392+intron-Distal3.7420912.53978K562KHSRP
chr1100755160100755219+intron-Distal3.892645.60471HepG2U2AF2
chr1100733578100733636+intron-Distal,intron-Proximal3.053594.16517K562KHSRP
chr1100741007100741091+intron-Distal,intron-Proximal3.550424.08064K562KHSRP
chr1100749964100750030+intron-Distal3.382544.07077HepG2HNRNPC
chr1100734128100734231+intron-Distal3.896023.57543K562ILF3
chr1100755245100755358+intron-Distal5.096078.05296HepG2KHSRP
chr1100755269100755280+intron-Distal4.4074018.17658K562KHSRP
chr1100755244100755269+intron-Distal4.5020813.80525K562KHSRP
chr1100740740100740902+intron-Distal4.1996314.82034K562HNRNPL
chr1100755233100755244+intron-Distal3.285924.96160K562KHSRP
chr1100740525100740580+intron-Proximal3.563215.78005K562KHSRP
chr1100740310100740368+intron-Proximal5.207308.27925K562KHSRP
chr1100733636100733689+intron-Proximal3.855035.56048K562KHSRP
chr1100742767100742812+intron-Proximal5.112936.90654K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RTCA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RTCA is not available on ENCORE database.

  • 56 RBPs can affect the levels of RTCA.  








The Knockdown/knockout RNA-Seq assay for RTCA is not available on ENCORE database.





56 RBPs can affect the gene expression of RTCA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RTCAENSG00000137996.8603.47130478.473800.334702.700402.09930HepG2ACO1
RTCAENSG00000137996.81169.38130742.510700.655205.415404.70050HepG2AKAP1
RTCAENSG00000137996.8666.71440535.084500.317202.012401.34740HepG2CALR
RTCAENSG00000137996.8645.20560478.389700.431504.422003.61880HepG2CKAP4
RTCAENSG00000137996.8426.23960322.165800.403802.613601.62560HepG2YBX3
RTCAENSG00000137996.8884.72310664.582000.412704.386503.60970HepG2CELF1
RTCAENSG00000137996.8518.12620351.052800.561503.946103.14950HepG2DDX21
RTCAENSG00000137996.81035.70270711.300700.542004.326303.55860HepG2DDX3X
RTCAENSG00000137996.8744.00580476.217200.643604.834203.84570HepG2DDX55
RTCAENSG00000137996.8565.86220457.774900.305702.010501.41820HepG2DKC1
RTCAENSG00000137996.8459.40290323.054500.507902.483001.44140HepG2AGO1
RTCAENSG00000137996.8921.02030704.983500.385503.909502.94420HepG2EIF4G1
RTCAENSG00000137996.8490.48200654.88090-0.417002.393001.74770HepG2FXR1
RTCAENSG00000137996.8391.05760615.07180-0.653405.146104.21580HepG2HNRNPK
RTCAENSG00000137996.8457.21530360.479900.342902.388801.70050HepG2ILF2
RTCAENSG00000137996.8890.36220658.793200.434502.628602.01300HepG2MATR3
RTCAENSG00000137996.8641.64210486.301800.399802.828802.01100HepG2MSI2
RTCAENSG00000137996.8786.09000600.596600.388202.329701.66270HepG2PABPC4
RTCAENSG00000137996.81084.34360405.478401.4190013.3871011.94500HepG2RAVER1
RTCAENSG00000137996.81223.34620805.547800.602709.115508.29950HepG2RBM22
RTCAENSG00000137996.8371.82550565.45680-0.604805.193604.29640HepG2RBM25
RTCAENSG00000137996.8473.73940596.25360-0.331802.437101.85380HepG2RECQL
RTCAENSG00000137996.8424.36340306.657900.468602.835702.21420HepG2RPS19
RTCAENSG00000137996.8583.11610442.098600.399302.366601.37910HepG2RPS5
RTCAENSG00000137996.8519.05930363.503800.513803.048002.22910HepG2RRP9
RTCAENSG00000137996.8432.38330314.279400.460203.545402.83210HepG2SAFB2
RTCAENSG00000137996.8443.53520307.796500.527003.219902.20260HepG2SERBP1
RTCAENSG00000137996.8692.13620516.199200.423002.210201.60650HepG2SF3A3
RTCAENSG00000137996.8487.06210366.508800.410203.266102.57660HepG2SMN1
RTCAENSG00000137996.81497.16780909.819700.7185016.7060015.74780HepG2SRFBP1
RTCAENSG00000137996.81285.19310625.168501.0396026.4266025.29100HepG2SRSF1
RTCAENSG00000137996.8467.49670625.39450-0.419803.791402.99580HepG2SRSF7
RTCAENSG00000137996.8645.23410474.095100.444502.625601.96480HepG2SUPV3L1
RTCAENSG00000137996.8565.25960457.788900.304102.178701.54650HepG2UPF1
RTCAENSG00000137996.8900.22390503.481300.8382018.0129016.91950HepG2ZNF622
RTCAENSG00000137996.81273.533301493.73870-0.230102.235201.71600K562AGGF1
RTCAENSG00000137996.81468.197201013.062400.535205.166103.96350K562BOP1
RTCAENSG00000137996.8953.58940753.833700.339002.693501.66500K562DDX3X
RTCAENSG00000137996.81899.827801331.835900.512409.902308.76000K562DDX47
RTCAENSG00000137996.81313.032601010.621400.377604.411103.53050K562EIF2S2
RTCAENSG00000137996.8601.86330361.357000.735903.864902.65250K562EIF3A
RTCAENSG00000137996.8921.86470759.577900.279301.995301.31040K562EIF3G
RTCAENSG00000137996.81112.62710753.308300.562603.871403.00220K562G3BP2
RTCAENSG00000137996.81711.907801346.714200.346103.079302.28450K562GRSF1
RTCAENSG00000137996.8542.09180673.89060-0.314001.871001.36850K562HNRNPC
RTCAENSG00000137996.81015.80950766.844200.405503.583401.44140K562HNRNPH1
RTCAENSG00000137996.81443.39970842.729500.776208.639506.83210K562HNRNPM
RTCAENSG00000137996.82444.790401389.333200.8152013.1300011.44300K562HSPD1
RTCAENSG00000137996.81379.50560878.124700.651605.240803.90250K562KRR1
RTCAENSG00000137996.8878.39600668.776100.393202.789502.03700K562PRPF8
RTCAENSG00000137996.8476.86300604.22920-0.341502.141101.35590K562PSIP1
RTCAENSG00000137996.81058.01560718.738300.557702.909401.45070K562RAVER1
RTCAENSG00000137996.8336.05200551.35610-0.714306.521504.99960K562RCC2
RTCAENSG00000137996.81289.16260681.330200.9199011.279509.59970K562RPS19
RTCAENSG00000137996.8551.98410783.26810-0.504905.047803.87520K562SF3B4
RTCAENSG00000137996.8909.82470713.187300.351202.858002.02410K562SYNCRIP
RTCAENSG00000137996.8476.23260617.48950-0.374702.354501.49330K562TRIM56
RTCAENSG00000137996.8581.96110754.10650-0.373802.944602.11620K562U2AF2
RTCAENSG00000137996.81212.60330940.750800.366104.827103.73720K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RTCA is not available on ENCORE database.





11 RBPs can affect the splicing of RTCA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERTCAENSG00000137996.8chr1+100740379100740521100738949100739008100741154100741279-0.102000.001030.03846excludedK562PRPF8
SERTCAENSG00000137996.8chr1+100740379100740521100738949100739008100741154100741279-0.141000.001070.02847excludedHepG2HNRNPK
SERTCAENSG00000137996.8chr1+100740379100740521100738949100739008100741154100741279-0.133000.000000.00011excludedHepG2U2AF2
SERTCAENSG00000137996.8chr1+1007330551007330941007320791007321801007337071007338510.185000.000000.00000includedK562AQR
SERTCAENSG00000137996.8chr1+100740379100740521100738848100739008100741154100741279-0.152000.000000.00000excludedK562AQR
SERTCAENSG00000137996.8chr1+1007330551007330941007320791007321801007337071007338510.074000.001210.05214includedHepG2SFPQ
SERTCAENSG00000137996.8chr1+1007330551007330941007320791007321801007337071007338510.185000.000110.01221includedHepG2HNRNPL
SERTCAENSG00000137996.8chr1+1007330551007330941007320791007321801007337071007338510.117000.000020.00355includedK562HNRNPL
SERTCAENSG00000137996.8chr1+1007330551007330941007320791007321801007337071007338510.269000.000120.03778includedHepG2CDC40
SERTCAENSG00000137996.8chr1+100740379100740521100738949100739008100741154100741279-0.158000.000000.00019excludedK562U2AF2
SERTCAENSG00000137996.8chr1+1007330551007330941007320791007321801007337071007338510.106000.000060.01423includedK562ZC3H8
SERTCAENSG00000137996.8chr1+100740379100740521100738949100739008100741154100741279-0.074000.001400.05187excludedK562PTBP1
A3SSRTCAENSG00000137996.8chr1+1007336921007338511007337071007338511007320791007321800.061000.000210.05828longerK562DROSHA
A3SSRTCAENSG00000137996.8chr1+1007336921007338511007337071007338511007320791007321800.080000.000930.00650longerK562AQR
MXERTCAENSG00000137996.8chr1+1007337071007338511007361121007362361007320791007321801007389491007390080.170000.001510.044571includedK562XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RTCA is not avaliable on ENCORE database.