RHBDD1

General Information

Gene Name       : RHBDD1
Gene ID             : ENSG00000144468.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RHBDD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RHBDD1ENSG00000144468.1615.0410.2412.64ENCSR000AEF
HepG2RHBDD1ENSG00000144468.163.244.643.94ENCSR985KAT
K562RHBDD1ENSG00000144468.1618.0116.1517.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RHBDD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RHBDD1 RNA is bound by 10 proteins.  







eCLIP assay for RHBDD1 is not avaliable on ENCORE database.





10 proteins are bound to RHBDD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2227862777227862846+3'-UTR5.041056.31097K562FAM120A
chr2227860571227860780+3'-UTR4.431929.04978K562RBM15
chr2227704218227704272+5'-UTR,intron-Distal3.993893.66349K562LIN28B
chr2227729751227729839+CDS3.247313.34231K562RBM15
chr2227771457227771528+CDS,intron-Proximal4.244456.10653K562SF3B4
chr2227729723227729843+CDS,intron-Proximal3.093393.07497K562SND1
chr2227729443227729532+CDS3.125943.34065K562IGF2BP1
chr2227707765227707817+intron-Distal4.815356.73731K562EXOSC5
chr2227707296227707371+intron-Distal4.490814.48560K562EXOSC5
chr2227708445227708499+intron-Distal4.468439.39985K562EXOSC5
chr2227792172227792296+intron-Distal3.609103.02234K562KHSRP
chr2227796383227796473+intron-Distal4.6857113.64236K562CSTF2T
chr2227708794227708846+intron-Distal3.428794.02190K562EXOSC5
chr2227765447227765535+intron-Distal3.723513.25538K562KHSRP
chr2227808733227808813+intron-Distal3.995653.27946HepG2HNRNPM
chr2227800904227801046+intron-Distal4.101554.14103K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RHBDD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RHBDD1 is not available on ENCORE database.

  • 60 RBPs can affect the levels of RHBDD1.  








The Knockdown/knockout RNA-Seq assay for RHBDD1 is not available on ENCORE database.





60 RBPs can affect the gene expression of RHBDD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RHBDD1ENSG00000144468.12205.82630121.406300.761503.495002.29920HepG2AATF
RHBDD1ENSG00000144468.12289.02370203.550300.505703.072702.43680HepG2ACO1
RHBDD1ENSG00000144468.12662.97630339.102000.967108.253707.38860HepG2AKAP1
RHBDD1ENSG00000144468.12392.84870209.584600.906307.313906.39590HepG2BOP1
RHBDD1ENSG00000144468.12322.34990240.971200.419702.062701.39020HepG2CALR
RHBDD1ENSG00000144468.12403.50640225.213900.841206.835505.17070HepG2CPSF7
RHBDD1ENSG00000144468.12590.32160279.087501.0807010.011008.91640HepG2DDX6
RHBDD1ENSG00000144468.12278.80690180.867700.624203.915103.09050HepG2DNAJC21
RHBDD1ENSG00000144468.12218.91620135.194800.695203.262002.28690HepG2EIF3D
RHBDD1ENSG00000144468.12427.78470296.376000.529402.789602.14780HepG2EIF4A3
RHBDD1ENSG00000144468.12618.75700430.954300.521705.091504.32140HepG2ETF1
RHBDD1ENSG00000144468.12256.49840127.693001.006206.779405.13110HepG2FASTKD2
RHBDD1ENSG00000144468.12203.50270294.61350-0.533802.410101.58050HepG2G3BP2
RHBDD1ENSG00000144468.12302.58270228.939900.402302.123401.52320HepG2HNRNPL
RHBDD1ENSG00000144468.12135.49400283.67290-1.066006.127904.57940HepG2KHSRP
RHBDD1ENSG00000144468.12254.62890141.503200.847503.048601.94400HepG2METAP2
RHBDD1ENSG00000144468.12109.21980184.55900-0.756802.921902.15230HepG2NSUN2
RHBDD1ENSG00000144468.12380.51850274.206100.472602.312001.64750HepG2PABPC4
RHBDD1ENSG00000144468.12182.64640282.30280-0.628204.109003.18610HepG2PRPF4
RHBDD1ENSG00000144468.12396.70220252.519900.651606.026905.22080HepG2PUM1
RHBDD1ENSG00000144468.12461.62080296.801600.637104.906804.11080HepG2QKI
RHBDD1ENSG00000144468.12553.87830277.810600.9954012.2730010.67080HepG2RBM15
RHBDD1ENSG00000144468.12402.49920284.929300.498302.551501.89150HepG2RPLP0
RHBDD1ENSG00000144468.12235.97820117.633201.004304.654003.66480HepG2RRP9
RHBDD1ENSG00000144468.12242.18410179.683700.430502.083801.51190HepG2SAFB2
RHBDD1ENSG00000144468.12725.05060406.825900.8336013.0265012.15380HepG2SRFBP1
RHBDD1ENSG00000144468.12470.05030242.259100.9562012.3429011.32380HepG2SRSF9
RHBDD1ENSG00000144468.12307.14250189.071400.699902.970001.72140HepG2SUB1
RHBDD1ENSG00000144468.12364.92670267.118300.450002.878802.24700HepG2SUCLG1
RHBDD1ENSG00000144468.12368.51810267.630200.461402.614802.06840HepG2TAF15
RHBDD1ENSG00000144468.12609.83220244.680101.3174027.7374026.46470HepG2ZNF622
RHBDD1ENSG00000144468.12967.991601324.44450-0.452306.676205.85010K562AGGF1
RHBDD1ENSG00000144468.121101.080901455.24930-0.402303.859602.65700K562AKAP8
RHBDD1ENSG00000144468.12830.427901378.11620-0.7308010.310708.94450K562AKAP8L
RHBDD1ENSG00000144468.12761.109301091.23150-0.519804.894804.15390K562AQR
RHBDD1ENSG00000144468.121121.588801445.92220-0.366404.438803.25190K562ATP5C1
RHBDD1ENSG00000144468.12491.41020643.25470-0.388503.327502.27290K562BCLAF1
RHBDD1ENSG00000144468.12818.592701073.48440-0.391104.589303.13740K562CPEB4
RHBDD1ENSG00000144468.12426.90130649.39910-0.605205.652404.54000K562CPSF6
RHBDD1ENSG00000144468.12452.94260578.60600-0.353302.328301.37550K562DDX3X
RHBDD1ENSG00000144468.12455.20250651.66670-0.517603.506401.58420K562DDX51
RHBDD1ENSG00000144468.12459.95440603.37630-0.391602.237001.41620K562EFTUD2
RHBDD1ENSG00000144468.12648.87150801.86970-0.305402.428901.74730K562EIF2S2
RHBDD1ENSG00000144468.12498.77820643.07790-0.366602.696301.90920K562EIF3G
RHBDD1ENSG00000144468.12356.45620560.05090-0.651804.622403.41160K562FTO
RHBDD1ENSG00000144468.12810.410801068.56400-0.398903.454602.61190K562GRSF1
RHBDD1ENSG00000144468.12483.80830625.98010-0.371702.359601.80230K562HNRNPC
RHBDD1ENSG00000144468.121040.101201462.62480-0.491805.308804.08840K562KIF1C
RHBDD1ENSG00000144468.121316.889101638.49540-0.315202.952502.00500K562MBNL1
RHBDD1ENSG00000144468.12862.654401148.45790-0.412802.390901.58390K562NAA15
RHBDD1ENSG00000144468.12428.84810594.49450-0.471202.840301.52370K562NONO
RHBDD1ENSG00000144468.12579.66600759.68560-0.390202.732901.75870K562PCBP2
RHBDD1ENSG00000144468.121138.605501496.89460-0.394704.660903.40430K562PUM2
RHBDD1ENSG00000144468.12709.645201366.91550-0.9458014.2546013.06450K562PUS1
RHBDD1ENSG00000144468.12918.392401331.68550-0.536107.654606.69850K562RBM15
RHBDD1ENSG00000144468.12580.87160795.36570-0.453403.598002.62870K562RBM22
RHBDD1ENSG00000144468.12380.86840598.09100-0.651104.361903.33200K562RPS19
RHBDD1ENSG00000144468.12636.92380813.30410-0.352702.642701.95030K562SRSF1
RHBDD1ENSG00000144468.12857.18300665.765400.364502.906802.06370K562SYNCRIP
RHBDD1ENSG00000144468.12785.92150930.43940-0.243501.994501.37780K562UPF1
RHBDD1ENSG00000144468.12944.626001229.40520-0.380103.297802.34630K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RHBDD1 is not available on ENCORE database.





4 RBPs can affect the splicing of RHBDD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERHBDD1ENSG00000144468.12chr2+2277041242277043432277007592277008032277293192277298420.234000.000920.09809includedK562DROSHA
SERHBDD1ENSG00000144468.12chr2+227704124227704343227700759227700803227729319227729842-0.215000.000210.00458excludedK562PUS1
SERHBDD1ENSG00000144468.12chr2+227702788227702870227702263227702486227704124227704343-0.607000.000000.00366excludedK562PUM2
SERHBDD1ENSG00000144468.12chr2+227704124227704343227700759227700803227729319227729842-0.168000.001650.03993excludedK562RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RHBDD1 is not avaliable on ENCORE database.