RGL3

General Information

Gene Name       : RGL3
Gene ID             : ENSG00000205517.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RGL3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RGL3ENSG00000205517.120.000.050.03ENCSR000AEF
HepG2RGL3ENSG00000205517.125.945.125.53ENCSR985KAT
K562RGL3ENSG00000205517.120.160.150.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RGL3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RGL3 RNA is bound by 6 proteins.  







eCLIP assay for RGL3 is not avaliable on ENCORE database.





6 proteins are bound to RGL3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191151277911512848-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.052263.56713HepG2SF3B4
chr191151276411512804-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.845625.98353HepG2EFTUD2
chr191151278211512836-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.662324.68902HepG2PPIG
chr191151307311513149-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.467236.04280HepG2PRPF8
chr191151280411512894-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.295858.08215HepG2EFTUD2
chr191151053711510627-3'-UTR,CDS,intron-Distal,intron-Proximal5.059664.38106HepG2PPIG
chr191152661211526665-5'-UTR,CDS,intron-Distal,intron-Proximal4.627125.56813HepG2PPIG
chr191152728111527364-CDS,intron-Distal,intron-Proximal4.673335.35117HepG2PRPF8
chr191152674911526824-CDS,intron-Distal4.073676.08299HepG2PPIG
chr191151295511513056-intron-Distal,intron-Proximal3.999505.10672HepG2DDX59
chr191151300711513052-intron-Distal,intron-Proximal4.055053.57018HepG2HNRNPK
chr191151305211513125-intron-Distal,intron-Proximal4.731875.31936HepG2HNRNPK
chr191151294411513007-intron-Distal,intron-Proximal3.381653.84715HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RGL3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RGL3 is not available on ENCORE database.

  • 63 RBPs can affect the levels of RGL3.  








The Knockdown/knockout RNA-Seq assay for RGL3 is not available on ENCORE database.





63 RBPs can affect the gene expression of RGL3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RGL3ENSG00000205517.8468.54980297.375500.655804.137502.86960HepG2AKAP8
RGL3ENSG00000205517.8345.48960232.439400.571704.091303.17230HepG2AKAP8L
RGL3ENSG00000205517.8214.49380116.705200.878004.255603.29040HepG2ASCC1
RGL3ENSG00000205517.8111.25500228.89650-1.040806.216905.36150HepG2BOP1
RGL3ENSG00000205517.8338.94220210.138900.689603.961603.15210HepG2CPSF6
RGL3ENSG00000205517.8175.27140278.12650-0.666203.875403.13770HepG2CELF1
RGL3ENSG00000205517.8308.59400213.967500.528203.767002.81240HepG2DDX19B
RGL3ENSG00000205517.8267.32730135.108800.984405.734504.86420HepG2DDX3X
RGL3ENSG00000205517.8292.26830116.083501.332009.467408.39700HepG2DDX6
RGL3ENSG00000205517.8294.73910184.993300.671904.578803.69280HepG2DNAJC21
RGL3ENSG00000205517.8268.47320183.367900.549903.584202.86000HepG2DNAJC2
RGL3ENSG00000205517.8479.50660111.571802.1035028.4248026.65630HepG2EIF2S1
RGL3ENSG00000205517.8128.53480209.78570-0.706803.196902.23090HepG2EIF3D
RGL3ENSG00000205517.8351.13180123.289301.5099011.9615010.65770HepG2EIF4A3
RGL3ENSG00000205517.8613.59300308.814200.9904014.8714013.65630HepG2ETF1
RGL3ENSG00000205517.8269.83780187.545400.524802.724901.56710HepG2FAM120A
RGL3ENSG00000205517.8226.98140124.426000.867204.388603.53120HepG2FXR1
RGL3ENSG00000205517.8351.72890115.406401.6076015.6980014.17300HepG2G3BP1
RGL3ENSG00000205517.8227.63950122.540900.893404.587703.42990HepG2G3BP2
RGL3ENSG00000205517.8348.68930238.207200.549602.612301.98780HepG2GPKOW
RGL3ENSG00000205517.8364.61500220.875200.723006.705005.26850HepG2HDGF
RGL3ENSG00000205517.8307.84330116.899101.3968011.4171010.08940HepG2HNRNPK
RGL3ENSG00000205517.8306.19000206.371300.569103.798103.09860HepG2HNRNPU
RGL3ENSG00000205517.8293.87510210.801000.479203.007302.24560HepG2ILF2
RGL3ENSG00000205517.8311.97210204.165000.611602.635401.35540HepG2ILF3
RGL3ENSG00000205517.8269.79350117.997101.193006.986305.30770HepG2KHSRP
RGL3ENSG00000205517.8478.85890323.534500.565602.882601.60780HepG2KRR1
RGL3ENSG00000205517.8390.05800231.846100.750403.728802.59240HepG2MTPAP
RGL3ENSG00000205517.8383.09520128.105001.5803015.3560013.94760HepG2NCBP2
RGL3ENSG00000205517.8296.78600123.926701.2598013.1799012.01130HepG2PCBP1
RGL3ENSG00000205517.8504.74700300.227800.749407.768406.67040HepG2PUM2
RGL3ENSG00000205517.8154.74120235.64660-0.606803.458402.78780HepG2PUS1
RGL3ENSG00000205517.851.69740184.10630-1.832404.932604.00530HepG2RAVER1
RGL3ENSG00000205517.8444.84260339.709000.388902.256001.47160HepG2RBM15
RGL3ENSG00000205517.8333.49190123.942401.4279014.9797013.47470HepG2RBM25
RGL3ENSG00000205517.8303.33790139.875701.116703.035301.34140HepG2RBM39
RGL3ENSG00000205517.8228.49540140.343500.703103.826203.21000HepG2NELFE
RGL3ENSG00000205517.8216.95470130.744300.730503.098702.45150HepG2RECQL
RGL3ENSG00000205517.8281.16140204.155800.461602.035101.50060HepG2RPS19
RGL3ENSG00000205517.8316.93970210.343800.591402.634901.85400HepG2RPS3A
RGL3ENSG00000205517.8148.92920225.00660-0.595302.430101.76760HepG2SF3B1
RGL3ENSG00000205517.8310.60910131.269801.2425012.1304011.03010HepG2SF3B4
RGL3ENSG00000205517.8279.82050214.317300.384701.975501.41710HepG2SMN1
RGL3ENSG00000205517.8624.90950291.541201.0998019.0466018.04130HepG2SRFBP1
RGL3ENSG00000205517.8241.87890111.498001.117208.511307.63680HepG2SRSF9
RGL3ENSG00000205517.8124.76310253.14160-1.020807.997307.21270HepG2SSB
RGL3ENSG00000205517.8452.08210322.609700.486702.612001.36390HepG2SSRP1
RGL3ENSG00000205517.8292.48030164.841500.827203.534702.78400HepG2SUPV3L1
RGL3ENSG00000205517.8318.31030123.216001.3691013.8564012.74370HepG2TAF15
RGL3ENSG00000205517.8182.55320113.171000.689703.371302.45310HepG2TIA1
RGL3ENSG00000205517.8407.04460200.518201.0214010.669709.79810HepG2TIAL1
RGL3ENSG00000205517.8329.85290202.321500.705105.742404.98370HepG2TRIM56
RGL3ENSG00000205517.8132.22250297.50560-1.169908.310407.22110HepG2U2AF1
RGL3ENSG00000205517.8359.83010267.553200.427402.712302.01890HepG2UPF1
RGL3ENSG00000205517.897.89260258.31240-1.3998012.1174011.00080HepG2UTP3
RGL3ENSG00000205517.8246.88660162.269000.605402.015001.38810HepG2XRN2
RGL3ENSG00000205517.8182.28330294.25760-0.690905.318004.62190HepG2ZNF622
RGL3ENSG00000205517.823.646905.360002.141202.486801.44090K562CPEB4
RGL3ENSG00000205517.815.133402.316402.707702.410401.73140K562EIF2S2
RGL3ENSG00000205517.815.738701.825403.108002.439601.63430K562FMR1
RGL3ENSG00000205517.814.641201.548503.241002.636301.74530K562FTO
RGL3ENSG00000205517.80.000009.54320-99999.999992.887102.27140K562FXR1
RGL3ENSG00000205517.841.702606.220102.745004.602701.78070K562HNRNPUL1
RGL3ENSG00000205517.834.9435013.061001.419701.803401.30660K562RBM15
RGL3ENSG00000205517.816.506501.657503.315902.692001.88790K562RPS19
RGL3ENSG00000205517.828.372704.004502.824704.584503.66840K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RGL3 is not available on ENCORE database.





4 RBPs can affect the splicing of RGL3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERGL3ENSG00000205517.8chr19-115052811150545911505039115051961150791911508034-0.315000.000020.00442excludedHepG2SUPV3L1
SERGL3ENSG00000205517.8chr19-115052811150545911505039115051961150791911508034-0.332000.000020.00815excludedHepG2DDX55
RIRGL3ENSG00000205517.8chr19-1152728711527733115272871152734111527509115277330.345000.007530.06147includedHepG2RBM22
RIRGL3ENSG00000205517.8chr19-115272871152773311527287115273411152750911527733-0.418000.000930.03654excludedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RGL3 is not avaliable on ENCORE database.