RFESD

General Information

Gene Name       : RFESD
Gene ID             : ENSG00000175449.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RFESD)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RFESDENSG00000175449.131.202.261.73ENCSR000AEF
HepG2RFESDENSG00000175449.130.270.770.52ENCSR985KAT
K562RFESDENSG00000175449.1386.9786.4786.72ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RFESD is not avaliable on ENCORE database.



Proteins bound to RNA
  • RFESD RNA is bound by 9 proteins.  







eCLIP assay for RFESD is not avaliable on ENCORE database.





9 proteins are bound to RFESD RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr59498974294989863+3'-UTR,5'-UTR,CDS,intron-Proximal3.670006.90700K562BUD13
chr59498796394988036+3'-UTR,5'-UTR,CDS,intron-Proximal4.084206.19204K562YBX3
chr59499173894991792+3'-UTR,CDS,intron-Proximal4.947836.34419K562PUM2
chr59498802494988084+3'-UTR,CDS,intron-Proximal3.366175.83656K562PRPF8
chr59498803394988089+3'-UTR,CDS,intron-Proximal4.904328.30573K562AQR
chr59499001594990112+CDS,intron-Distal,intron-Proximal5.3870227.39784K562EFTUD2
chr59499003794990111+CDS,intron-Distal,intron-Proximal3.334664.64824K562PRPF8
chr59499650094996587+intron-Distal3.906653.21228K562TIA1
chr59499022694990330+intron-Distal3.120155.42536K562KHSRP
chr59499649694996579+intron-Distal3.893086.86368K562PTBP1
chr59498810794988169+intron-Distal,intron-Proximal4.530824.58968K562PRPF8
chr59499686094996966+intron-Distal3.704904.57279K562PTBP1
chr59500429395004387+intron-Distal3.663363.06150K562KHSRP
chr59498892094989028+intron-Distal,intron-Proximal3.487207.07647K562PRPF8
chr59498808994988127+intron-Proximal4.672063.70761K562AQR
chr59499384494993898+intron-Proximal3.966143.31110K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RFESD is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RFESD is not available on ENCORE database.

  • 65 RBPs can affect the levels of RFESD.  








The Knockdown/knockout RNA-Seq assay for RFESD is not available on ENCORE database.





65 RBPs can affect the gene expression of RFESD :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RFESDENSG00000175449.910.5619031.98820-1.598702.551401.96240HepG2PCBP1
RFESDENSG00000175449.913.5728032.54770-1.261801.860001.39410HepG2PTBP1
RFESDENSG00000175449.911.4759033.73510-1.555602.403301.82350HepG2RECQL
RFESDENSG00000175449.912.2983033.88910-1.462402.187501.65280HepG2SF3B4
RFESDENSG00000175449.914.4741035.37180-1.289101.886701.47450HepG2SRSF1
RFESDENSG00000175449.9738.31490893.27550-0.274902.443501.90500K562AGGF1
RFESDENSG00000175449.91708.859902841.67970-0.733704.624903.90130K562AQR
RFESDENSG00000175449.91475.010201853.17780-0.329303.900002.28730K562BCCIP
RFESDENSG00000175449.91432.079401790.78150-0.322504.424703.19250K562BCLAF1
RFESDENSG00000175449.91060.064702054.66310-0.9547021.8252019.58860K562CPSF6
RFESDENSG00000175449.91114.99360715.667100.639604.294801.99350K562YBX3
RFESDENSG00000175449.91033.150101358.57450-0.395004.036502.72940K562CSTF2
RFESDENSG00000175449.95159.618103853.274000.421107.655706.05910K562CELF1
RFESDENSG00000175449.9505.38520767.09850-0.602006.266204.62240K562DDX3X
RFESDENSG00000175449.93300.914202250.913600.552308.251107.20490K562DDX47
RFESDENSG00000175449.91819.459401362.330100.417302.521201.30800K562EEF2
RFESDENSG00000175449.9868.090101316.46850-0.600803.688002.62170K562EFTUD2
RFESDENSG00000175449.91057.015602292.51280-1.1169039.0056036.92870K562EIF2S2
RFESDENSG00000175449.91100.72470666.469200.723704.470603.16190K562EIF3A
RFESDENSG00000175449.92090.996701183.253600.8213019.2166017.05820K562EIF3G
RFESDENSG00000175449.9614.03020801.41350-0.384202.817501.98910K562EIF4A3
RFESDENSG00000175449.94077.326403134.528700.379304.021802.89140K562EIF4G2
RFESDENSG00000175449.91204.773101536.88520-0.351203.295101.89620K562EXOSC5
RFESDENSG00000175449.91540.565702090.69430-0.440504.383803.30640K562FMR1
RFESDENSG00000175449.91409.005401772.10560-0.330802.286301.45970K562FTO
RFESDENSG00000175449.91334.88960833.433700.6795012.3163011.13350K562FXR1
RFESDENSG00000175449.91412.697601038.458800.443902.762002.05500K562G3BP2
RFESDENSG00000175449.91727.003301382.293700.321103.491002.21020K562GLRX3
RFESDENSG00000175449.91577.848501961.64660-0.314102.662601.88220K562GPKOW
RFESDENSG00000175449.9709.923201275.85070-0.845703.713602.23020K562HNRNPA2B1
RFESDENSG00000175449.92080.714501225.082100.764103.297801.93640K562HNRNPK
RFESDENSG00000175449.92014.278003239.72310-0.6856010.661509.12570K562HSPD1
RFESDENSG00000175449.9853.793301225.91780-0.521903.885902.58540K562IGF2BP2
RFESDENSG00000175449.9836.128301247.15090-0.576806.178504.28590K562IGF2BP3
RFESDENSG00000175449.9904.538501288.95150-0.510905.057403.91420K562MAGOH
RFESDENSG00000175449.9718.22220944.23950-0.394703.146701.98030K562MAK16
RFESDENSG00000175449.91770.628701286.421700.460804.365503.18250K562MATR3
RFESDENSG00000175449.91504.655901914.80760-0.347803.213402.26650K562METAP2
RFESDENSG00000175449.9600.37800800.28010-0.414603.518202.11890K562NCBP2
RFESDENSG00000175449.9767.831701098.43100-0.516603.945801.75930K562PABPC4
RFESDENSG00000175449.9595.708101116.63530-0.906503.553802.39150K562PABPN1
RFESDENSG00000175449.9834.896901259.68210-0.593407.319405.05330K562PCBP1
RFESDENSG00000175449.9633.209001328.17160-1.068704.613702.56310K562PPP1R8
RFESDENSG00000175449.9739.65660946.87010-0.356302.302401.48330K562PSIP1
RFESDENSG00000175449.94711.684603420.120700.462103.059202.20230K562PUF60
RFESDENSG00000175449.9620.13230921.95050-0.572105.122004.41160K562PUS1
RFESDENSG00000175449.9738.94030985.67190-0.415603.227301.78360K562RBM25
RFESDENSG00000175449.9770.585001373.84550-0.834203.040001.40710K562RBM39
RFESDENSG00000175449.91596.372301263.861600.336902.484101.45680K562NELFE
RFESDENSG00000175449.91763.557601305.143800.434202.614501.82340K562RPS19
RFESDENSG00000175449.92097.672301310.090900.679006.197004.23830K562RRP9
RFESDENSG00000175449.9376.024801021.55270-1.441906.208604.17650K562SF1
RFESDENSG00000175449.91464.636301865.78130-0.349202.342701.45480K562SF3B1
RFESDENSG00000175449.9567.557401172.62900-1.046904.687902.95710K562SNRNP200
RFESDENSG00000175449.91989.610901632.320900.285504.111702.99340K562SRPK2
RFESDENSG00000175449.9953.887101227.56480-0.363902.618601.92870K562SRSF1
RFESDENSG00000175449.9746.937801159.18680-0.634105.691004.08120K562SRSF5
RFESDENSG00000175449.9978.182901220.53300-0.319303.236001.83070K562SSB
RFESDENSG00000175449.91836.405701504.025800.288002.756601.93820K562SYNCRIP
RFESDENSG00000175449.9753.344901198.50670-0.669907.733706.25980K562TIA1
RFESDENSG00000175449.91249.015101040.120300.263902.136701.43110K562U2AF2
RFESDENSG00000175449.91330.636401712.23870-0.363805.039704.10090K562UPF1
RFESDENSG00000175449.91278.948501672.72720-0.387204.025601.98190K562UPF2
RFESDENSG00000175449.9637.15600934.58810-0.552702.524601.31190K562UTP18
RFESDENSG00000175449.92285.965801523.458300.5854015.6187013.82830K562WDR43
RFESDENSG00000175449.9649.628701195.62620-0.880103.233701.31240K562XPO5
RFESDENSG00000175449.91432.78580934.613600.616302.973501.32550K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RFESD is not available on ENCORE database.





17 RBPs can affect the splicing of RFESD :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERFESDENSG00000175449.9chr5+949900369499007194989764949899409499174994993786-0.226000.000000.00000excludedK562SF3B4
SERFESDENSG00000175449.9chr5+9499003694990071949897649498994094991749949937860.115000.000050.03084includedK562XRN2
SERFESDENSG00000175449.9chr5+9498882094988918949878409498803594989764949899400.180000.000120.01604includedK562XRCC6
SERFESDENSG00000175449.9chr5+949888209498891894987840949880359498976494989940-0.101000.000860.01077excludedK562AQR
SERFESDENSG00000175449.9chr5+9498882094988918949878409498803594989764949899400.279000.000000.00002includedK562FXR1
SERFESDENSG00000175449.9chr5+9499003694990071949897649498994094991749949928440.098000.000010.00360includedK562MTPAP
SERFESDENSG00000175449.9chr5+9499003694990071949897649498994094991749949918940.110000.000380.01033includedK562U2AF1
SERFESDENSG00000175449.9chr5+9498882094988918949878409498803594989764949899400.112000.002900.08372includedK562TARDBP
SERFESDENSG00000175449.9chr5+9499003694990071949897649498994094991749949937860.115000.000010.00092includedK562HNRNPU
SERFESDENSG00000175449.9chr5+9499003694990071949897649498994094991749949918940.078000.000300.03818includedK562CPSF6
SERFESDENSG00000175449.9chr5+949900369499007194989764949899409499174994993786-0.203000.000000.00006excludedK562SF3B1
SERFESDENSG00000175449.9chr5+9499001494990071949897649498994094991749949928440.094000.000740.08986includedK562ZC3H8
SERFESDENSG00000175449.9chr5+9498882094988918949878409498803594989764949899400.231000.000040.01761includedK562SAFB
SERFESDENSG00000175449.9chr5+9498882094988918949878409498803594989764949899400.161000.000050.01556includedK562EIF3G
SERFESDENSG00000175449.9chr5+9498882094988918949878409498803594989764949899400.103000.003290.09665includedK562PTBP1
A3SSRFESDENSG00000175449.9chr5+9498879594988918949888829498891894987840949880350.449000.015410.07649longerK562AQR
MXERFESDENSG00000175449.9chr5+94987840949880359498882094988918949825829498377894989764949899400.079000.000080.004781includedK562UCHL5
MXERFESDENSG00000175449.9chr5+94987840949880359498882094988918949825829498377894989764949899400.061000.002480.062651includedK562XRN2
MXERFESDENSG00000175449.9chr5+94987840949880359498882094988918949824759498252194989764949899400.083000.013040.078401includedK562AQR
MXERFESDENSG00000175449.9chr5+94987840949880359498882094988918949825829498377894989764949899400.072000.000150.017991includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RFESD is not avaliable on ENCORE database.