RECQL5

General Information

Gene Name       : RECQL5
Gene ID             : ENSG00000108469.14
Essential Gene : No

Functions

Localization(RBPImage: RECQL5)

Domains (AlphaFold: RECQL5)


Antibody Validation

View validation images for all RECQL5 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RECQL5ENSG00000108469.147.1012.229.66ENCSR000AEF
HepG2RECQL5ENSG00000108469.1431.9720.9526.46ENCSR985KAT
K562RECQL5ENSG00000108469.1420.1515.5617.86ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq RECQL5-BGKcLV30-K562ENCSR632RWYRECQL5K562ReleasedENCSR347NKX   CRISPRKD% = 53.6,59.5






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
RECQL5ENCAB159ICCA302-520A1Released, ENCODE4BGKcLV30-29, Released, ENCODE4
RECQL5ENCAB843BODA302-522A1Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RECQL5K562CRISPRENCSR632RWYENCSR347NKXRECQL5-BGKcLV30-29,RECQL5-BGKcLV30-30NT-BGKcLV30-1,NT-BGKcLV30-253.6,59.5ReleasedENCODE4
RECQL5HepG2CRISPRBGHcLV32-27,BGHcLV32-28BGHcLV32-1,BGHcLV32-2NO CLEAR BAND,NotSatisfiedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    RECQL5: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cytoplasm
  • Cytosolic












  • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    RECQL5Product_ID: A302-520A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: RECQL5-human
    Bethyl_A302-520A_1_RECQL5.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the RECQL5 specific antibody, A302-520A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the RECQL5-specific antibody, A302-520A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
    RECQL5-K562-CRISPR-A302-520A.png<br>Caption: Western blot following CRISPR against RECQL5 in K562 whole cell lysate using RECQL5 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against RECQL5. RECQL5 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    RECQL5Product_ID: A302-522A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: RECQL5-human
    Bethyl_A302-522A_1_RECQL5.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the RECQL5 specific antibody, A302-522A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the RECQL5-specific antibody, A302-522A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








    RNA Targets

    • eCLIP assay for RECQL5 is not avaliable on ENCORE database.



    Proteins bound to RNA

    • RECQL5 RNA is bound by 17 proteins.  







    eCLIP assay for RECQL5 is not avaliable on ENCORE database.





    17 proteins are bound to RECQL5 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr177362726573627315-3'-UTR,CDS,intron-Distal4.252195.47493HepG2BUD13
    chr177364726373647302-3'-UTR,CDS,intron-Distal,intron-Proximal3.410644.69671HepG2PPIG
    chr177362349773623569-3'-UTR,CDS,intron-Distal3.851836.27819HepG2PPIG
    chr177362312373623304-3'-UTR,CDS,intron-Distal3.409176.97453HepG2LSM11
    chr177362768673627749-3'-UTR,CDS,intron-Distal,intron-Proximal3.741269.02617HepG2PPIG
    chr177362334173623409-3'-UTR,intron-Distal4.223324.50258HepG2LSM11
    chr177365439473654438-5'-UTR,CDS,intron-Distal3.791043.56019HepG2GRWD1
    chr177365437773654439-5'-UTR,CDS,intron-Distal,intron-Proximal3.787866.97808HepG2BCLAF1
    chr177366259573662654-5'-UTR,CDS,intron-Distal,intron-Proximal3.638679.76884HepG2BUD13
    chr177366257473662672-5'-UTR,CDS,intron-Distal,intron-Proximal3.653917.97712K562BUD13
    chr177362632173626361-CDS,intron-Distal,intron-Proximal3.270006.54857HepG2PPIG
    chr177365770873657762-CDS,intron-Distal3.097845.00751HepG2BCLAF1
    chr177362685773626874-CDS,intron-Distal,intron-Proximal4.0860410.42618HepG2PPIG
    chr177365445073654508-CDS,intron-Distal,intron-Proximal3.871064.80912HepG2PPIG
    chr177365875373658831-CDS,intron-Distal5.8385413.56215K562RBM15
    chr177365703473657070-CDS,intron-Distal,intron-Proximal4.885595.70640HepG2BCLAF1
    chr177365772373657741-CDS,intron-Distal4.347414.50440HepG2PPIG
    chr177362585873625909-CDS,intron-Distal3.325094.48818HepG2GRWD1
    chr177366112873661172-CDS,intron-Distal,intron-Proximal3.176666.80151HepG2BCLAF1
    chr177362685873626916-CDS,intron-Distal,intron-Proximal3.381366.20035HepG2BCLAF1
    chr177362475173624787-CDS,intron-Distal,intron-Proximal3.811967.55042HepG2PPIG
    chr177365879573658818-CDS,intron-Distal4.272159.08140HepG2RBM15
    chr177362531073625401-CDS,intron-Distal,intron-Proximal3.412198.07998HepG2PPIG
    chr177365764573657722-CDS,intron-Distal,intron-Proximal3.281535.62208HepG2PRPF8
    chr177362576373625805-CDS,intron-Distal,intron-Proximal3.584685.86107HepG2PPIG
    chr177365855673658649-CDS,intron-Distal,intron-Proximal3.790146.91167HepG2GRWD1
    chr177362487173624947-CDS,intron-Distal,intron-Proximal4.134254.24670HepG2SF3B4
    chr177362632273626370-CDS,intron-Distal,intron-Proximal4.098809.14631HepG2U2AF2
    chr177362671773626772-CDS,intron-Distal,intron-Proximal3.847418.74774HepG2PPIG
    chr177362632373626453-CDS,intron-Distal,intron-Proximal4.776727.39218K562SF3B4
    chr177362687473626907-CDS,intron-Distal4.9531615.40783HepG2PPIG
    chr177362680773626892-CDS,intron-Distal,intron-Proximal3.2777711.69715HepG2PRPF8
    chr177362524173625320-CDS,intron-Distal,intron-Proximal3.659513.58697HepG2UCHL5
    chr177365887873658948-CDS,intron-Distal3.168164.79538HepG2BCLAF1
    chr177365904173659078-CDS,intron-Distal,intron-Proximal3.229676.09950HepG2BCLAF1
    chr177362626373626316-CDS,intron-Distal,intron-Proximal3.270005.78238HepG2PPIG
    chr177366118473661252-CDS,intron-Distal,intron-Proximal3.618724.71371HepG2GRWD1
    chr177365865173658719-CDS,intron-Distal3.941833.15006K562RBM15
    chr177362448773624523-CDS,intron-Distal,intron-Proximal5.335939.15113HepG2PPIG
    chr177362574673625812-CDS,intron-Distal,intron-Proximal5.124219.76577HepG2PRPF8
    chr177366250773662560-CDS,intron-Distal,intron-Proximal3.223013.40321HepG2GRWD1
    chr177362706773627090-CDS,intron-Distal3.974704.41267HepG2PPIG
    chr177362705373627067-CDS,intron-Distal,intron-Proximal4.476814.96634HepG2PPIG
    chr177362370373623737-CDS,intron-Distal4.023906.08299HepG2PPIG
    chr177366251473662540-CDS,intron-Distal3.758644.52024HepG2PPIG
    chr177365856773658599-CDS,intron-Distal3.943265.73400HepG2PPIG
    chr177362478773624839-CDS,intron-Distal3.448786.54857HepG2PPIG
    chr177362532073625398-CDS,intron-Distal,intron-Proximal3.529923.10693HepG2UCHL5
    chr177366118573661253-CDS,intron-Distal,intron-Proximal3.563667.39995HepG2BCLAF1
    chr177362527873625342-CDS,intron-Distal,intron-Proximal5.370766.53290K562DDX24
    chr177365881873658853-CDS,intron-Distal4.817253.84462HepG2RBM15
    chr177362690773626918-CDS,intron-Distal,intron-Proximal4.627127.49899HepG2PPIG
    chr177362371173623766-CDS,intron-Distal3.269543.62686HepG2LSM11
    chr177362501473625066-CDS,intron-Distal,intron-Proximal5.624548.55457HepG2PPIG
    chr177365831073658384-intron-Distal4.460014.24741HepG2XRCC6
    chr177363317673633290-intron-Distal3.328303.28007HepG2NKRF
    chr177362924773629311-intron-Distal4.011104.10564HepG2CSTF2T
    chr177362556473625599-intron-Distal,intron-Proximal5.270049.26131HepG2SF3B4
    chr177363682073636867-intron-Distal3.866353.16310HepG2CSTF2T
    chr177363077473630831-intron-Distal3.477544.35339HepG2CSTF2T
    chr177362664273626690-intron-Distal,intron-Proximal5.348787.36776HepG2PRPF8
    chr177362559973625635-intron-Distal,intron-Proximal5.3402810.32912HepG2SF3B4
    chr177362555973625612-intron-Distal,intron-Proximal5.347529.36170HepG2SF3A3
    chr177362696473627016-intron-Distal,intron-Proximal5.533457.41664HepG2EFTUD2
    chr177363004373630116-intron-Distal4.170414.08332K562NONO
    chr177362636273626438-intron-Distal,intron-Proximal5.084119.41491HepG2SF3B4
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for RECQL5 is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for RECQL5 is not available on ENCORE database.

    • 73 RBPs can affect the levels of RECQL5.  








    The Knockdown/knockout RNA-Seq assay for RECQL5 is not available on ENCORE database.





    73 RBPs can affect the gene expression of RECQL5 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    RECQL5ENSG00000108469.101222.97060926.149200.401002.521901.62100HepG2ABCF1
    RECQL5ENSG00000108469.101299.86310938.062200.470502.738602.20920HepG2AKAP1
    RECQL5ENSG00000108469.101014.20580703.747200.527102.850801.89810HepG2BCCIP
    RECQL5ENSG00000108469.101165.55900938.816200.312003.830903.07260HepG2CKAP4
    RECQL5ENSG00000108469.101158.07560668.977800.791605.532604.44650HepG2CNOT7
    RECQL5ENSG00000108469.101138.15580868.616300.389804.490603.70690HepG2CELF1
    RECQL5ENSG00000108469.101103.76600933.970300.240902.484101.77630HepG2DAZAP1
    RECQL5ENSG00000108469.101254.59700898.469700.481603.668102.95810HepG2DDX3X
    RECQL5ENSG00000108469.10823.26700646.098200.349502.225501.31660HepG2DDX5
    RECQL5ENSG00000108469.101061.29740898.381200.240301.983801.39570HepG2DKC1
    RECQL5ENSG00000108469.10769.48980550.741000.482406.386805.45470HepG2DNAJC2
    RECQL5ENSG00000108469.101059.12840741.944900.513403.983303.28070HepG2EIF2S1
    RECQL5ENSG00000108469.101219.32670819.797300.572604.489703.67750HepG2EIF4A3
    RECQL5ENSG00000108469.101140.62670798.453100.514403.029602.31260HepG2EIF4B
    RECQL5ENSG00000108469.10720.54940917.58970-0.348802.669701.84990HepG2EWSR1
    RECQL5ENSG00000108469.101254.14990935.189100.423302.702501.94250HepG2FIP1L1
    RECQL5ENSG00000108469.10801.48790639.016400.326702.020601.34020HepG2FUBP3
    RECQL5ENSG00000108469.101265.99430827.561900.613205.791904.81420HepG2FXR1
    RECQL5ENSG00000108469.101381.37230767.463600.847809.892608.67340HepG2G3BP1
    RECQL5ENSG00000108469.10881.97650560.925800.652806.957506.00200HepG2HNRNPA1
    RECQL5ENSG00000108469.10949.44300797.901900.250802.184501.54160HepG2HNRNPF
    RECQL5ENSG00000108469.101013.12180777.643300.381502.528601.85910HepG2HNRNPK
    RECQL5ENSG00000108469.101039.80440850.773800.289403.183302.46370HepG2HNRNPL
    RECQL5ENSG00000108469.10816.10560619.814900.396804.305503.56290HepG2HNRNPU
    RECQL5ENSG00000108469.101181.77450780.031300.599305.501604.57930HepG2IGF2BP2
    RECQL5ENSG00000108469.10798.58220633.117800.334903.841602.99200HepG2ILF2
    RECQL5ENSG00000108469.101223.50150827.852700.563504.792703.93680HepG2MAGOH
    RECQL5ENSG00000108469.101100.39970832.417600.402502.424201.83090HepG2MATR3
    RECQL5ENSG00000108469.101118.45630851.970100.392502.489401.88720HepG2NCBP2
    RECQL5ENSG00000108469.101283.82270926.123300.471104.366303.40900HepG2NOL12
    RECQL5ENSG00000108469.101001.90410758.479300.401502.604501.90170HepG2PABPC4
    RECQL5ENSG00000108469.10754.99910613.492000.299302.414901.61950HepG2PARN
    RECQL5ENSG00000108469.10689.37680552.822800.318402.422101.72920HepG2PPIL4
    RECQL5ENSG00000108469.101025.12080795.395000.366004.006203.37470HepG2PTBP1
    RECQL5ENSG00000108469.101218.80370884.067300.463104.566703.82310HepG2PUF60
    RECQL5ENSG00000108469.101255.93420938.478100.420307.009206.15440HepG2PUM1
    RECQL5ENSG00000108469.101181.72690956.444600.305003.508802.83400HepG2PUS1
    RECQL5ENSG00000108469.101185.31830861.327600.460505.407904.57680HepG2QKI
    RECQL5ENSG00000108469.10322.07620588.20510-0.868904.833903.91690HepG2RAVER1
    RECQL5ENSG00000108469.101016.928601300.49970-0.354803.974003.38200HepG2RBM22
    RECQL5ENSG00000108469.101056.49390885.157400.255202.254501.75590HepG2NELFE
    RECQL5ENSG00000108469.10702.88060510.666200.460803.547102.85980HepG2RPS19
    RECQL5ENSG00000108469.10773.64840551.963800.487005.967805.07700HepG2SAFB2
    RECQL5ENSG00000108469.10792.831001023.94390-0.369102.021101.44320HepG2SF3A3
    RECQL5ENSG00000108469.101328.90170828.020700.6824013.3651012.21850HepG2SF3B4
    RECQL5ENSG00000108469.101049.40650847.686200.307903.486502.71390HepG2SLBP
    RECQL5ENSG00000108469.10778.30690643.668300.273902.431601.82320HepG2SMN1
    RECQL5ENSG00000108469.10826.53200600.633200.460502.568901.64750HepG2SMNDC1
    RECQL5ENSG00000108469.10981.408701468.82050-0.581708.746107.99270HepG2SRFBP1
    RECQL5ENSG00000108469.10714.80180864.31030-0.274002.064901.63980HepG2SRSF1
    RECQL5ENSG00000108469.101120.70100872.889700.360404.158703.41950HepG2SRSF5
    RECQL5ENSG00000108469.101614.418101275.203500.340204.236403.63080HepG2SSB
    RECQL5ENSG00000108469.101374.38260992.714300.469208.052707.08440HepG2SUCLG1
    RECQL5ENSG00000108469.10994.32960602.210300.7234010.619409.74970HepG2TIAL1
    RECQL5ENSG00000108469.10920.49360607.653400.599109.375808.43110HepG2TRIM56
    RECQL5ENSG00000108469.10566.75740799.99520-0.497303.461202.76350HepG2U2AF1
    RECQL5ENSG00000108469.101329.50810914.213700.540203.366102.44370HepG2UBE2L3
    RECQL5ENSG00000108469.10693.80060406.818400.770006.559205.37980HepG2UCHL5
    RECQL5ENSG00000108469.10930.94360630.469600.562202.637601.65850HepG2UPF2
    RECQL5ENSG00000108469.101014.34690678.024200.581003.925703.07010HepG2XRN2
    RECQL5ENSG00000108469.10549.49770844.23950-0.619508.121407.21910K562AGGF1
    RECQL5ENSG00000108469.10558.92680878.46960-0.652306.736905.68290K562AKAP8L
    RECQL5ENSG00000108469.10268.48330411.22840-0.615103.732402.39660K562FKBP4
    RECQL5ENSG00000108469.10155.04670258.54300-0.737703.465002.65570K562G3BP2
    RECQL5ENSG00000108469.10941.46720765.313700.298802.509001.65780K562HNRNPU
    RECQL5ENSG00000108469.10642.06100932.27530-0.538002.420601.65630K562KIF1C
    RECQL5ENSG00000108469.10820.495601044.38390-0.348102.539801.67430K562MBNL1
    RECQL5ENSG00000108469.10429.27670732.03750-0.770004.438703.24010K562NAA15
    RECQL5ENSG00000108469.10373.28370613.46250-0.716702.396901.48930K562PABPN1
    RECQL5ENSG00000108469.10775.72020600.615000.369002.894602.07450K562POLR2G
    RECQL5ENSG00000108469.10322.44370871.19990-1.4340022.5866021.05780K562PUS1
    RECQL5ENSG00000108469.10477.67320848.85380-0.8295012.1003010.86310K562RBM15
    RECQL5ENSG00000108469.10357.00110644.22750-0.851603.522702.07860K562SNRNP200
    RECQL5ENSG00000108469.10477.55020343.312400.476002.853101.77940K562SRSF4
    RECQL5ENSG00000108469.10551.39220415.341400.408702.567801.56280K562SRSF5
    RECQL5ENSG00000108469.10593.50150429.313600.467103.514302.57410K562TIA1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for RECQL5 is not available on ENCORE database.





    7 RBPs can affect the splicing of RECQL5 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SERECQL5ENSG00000108469.10chr17-736266987362677273626263736263577362685873626917-0.263000.000030.00094excludedHepG2U2AF1
    SERECQL5ENSG00000108469.10chr17-7364659673646798736275717362774873647265736473450.067000.003580.08186includedK562AKAP8L
    SERECQL5ENSG00000108469.10chr17-736266987362677273626263736263577362685873626917-0.264000.000560.00857excludedHepG2U2AF2
    SERECQL5ENSG00000108469.10chr17-7364659673646798736275717362774873647265736473450.227000.000000.00008includedK562PUS1
    SERECQL5ENSG00000108469.10chr17-736275297362774873627229736273297364726573647345-0.099000.006270.07376excludedK562PUS1
    A3SSRECQL5ENSG00000108469.10chr17-7362370273623811736237027362377273624297736245220.107000.000870.00611longerK562AQR
    MXERECQL5ENSG00000108469.10chr17-7362501373625555736257877362592273624751736248427362626373626357-0.260000.000880.075092includedK562XRCC6
    MXERECQL5ENSG00000108469.10chr17-7362685873626917736270537362709073626263736263577362722973627329-0.353000.003620.023362includedHepG2U2AF2
    MXERECQL5ENSG00000108469.10chr17-7365437773654540736570347365714673647265736473457365768573657788-0.222000.000370.045702includedK562NPM1

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for RECQL5 is not avaliable on ENCORE database.