PXMP2

General Information

Gene Name       : PXMP2
Gene ID             : ENSG00000176894.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PXMP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PXMP2ENSG00000176894.911.6328.9820.30ENCSR000AEF
HepG2PXMP2ENSG00000176894.933.3828.1730.78ENCSR985KAT
K562PXMP2ENSG00000176894.931.1635.1533.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PXMP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PXMP2 RNA is bound by 29 proteins.  







eCLIP assay for PXMP2 is not avaliable on ENCORE database.





29 proteins are bound to PXMP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12133297232133297322+3'-UTR,CDS,intron-Proximal3.516613.55754HepG2U2AF2
chr12133294337133294381+3'-UTR,CDS4.067923.31330K562UPF1
chr12133294143133294150+3'-UTR,CDS3.124143.29348K562YBX3
chr12133294660133294703+3'-UTR,CDS4.110839.32771K562YBX3
chr12133293974133294054+3'-UTR,5'-UTR,CDS,intron-Proximal4.612279.08030K562AQR
chr12133294702133294751+3'-UTR,CDS,intron-Proximal3.442344.98672K562AQR
chr12133293964133294039+3'-UTR,5'-UTR,CDS,intron-Proximal5.7283811.22447K562GTF2F1
chr12133294690133294748+3'-UTR,CDS,intron-Proximal4.8628216.17387HepG2PRPF8
chr12133293938133294049+3'-UTR,5'-UTR,CDS,intron-Proximal4.659955.25202HepG2AQR
chr12133294584133294746+3'-UTR,CDS,intron-Proximal3.381334.45064HepG2GRWD1
chr12133294580133294641+3'-UTR,CDS4.584374.85237K562UPF1
chr12133297249133297307+3'-UTR,CDS,intron-Proximal3.230334.13258K562RBFOX2
chr12133294293133294343+3'-UTR,CDS,intron-Proximal3.054033.17668K562METAP2
chr12133264212133264329+5'-UTR,CDS5.6655213.54507K562DDX3X
chr12133266938133267028+5'-UTR,CDS,intron-Proximal3.552836.00776K562PRPF8
chr12133266944133266991+5'-UTR,CDS,intron-Proximal4.271975.73990HepG2PRPF8
chr12133266874133266999+5'-UTR,CDS,intron-Proximal3.305334.48818HepG2GRWD1
chr12133266875133267007+5'-UTR,CDS,intron-Proximal3.878393.67596K562GRWD1
chr12133266883133267005+5'-UTR,CDS,intron-Proximal5.097327.06060HepG2PPIG
chr12133264216133264330+5'-UTR,CDS6.2172717.66846HepG2DDX3X
chr12133291620133291720+5'-UTR,CDS,intron-Proximal6.0143111.02807K562AQR
chr12133291473133291553+5'-UTR,CDS4.417805.79022K562YBX3
chr12133291618133291671+5'-UTR,CDS,intron-Proximal4.533405.64484HepG2PRPF8
chr12133291617133291670+5'-UTR,CDS,intron-Proximal4.456244.27476HepG2AQR
chr12133291553133291612+5'-UTR,CDS3.650635.57640K562YBX3
chr12133291443133291525+5'-UTR,CDS,intron-Proximal5.275096.64872K562UPF1
chr12133278070133278126+intron-Distal3.846534.32448K562PTBP1
chr12133295208133295268+intron-Distal,intron-Proximal5.5392413.30116HepG2CSTF2T
chr12133287564133287654+CDS,intron-Distal,intron-Proximal4.053914.24288K562UPF1
chr12133271899133272017+intron-Distal4.372887.54030K562GEMIN5
chr12133295285133295356+CDS,intron-Distal,intron-Proximal5.3932727.47258K562RBFOX2
chr12133287469133287654+CDS,intron-Distal,intron-Proximal3.608443.50315HepG2UPF1
chr12133295809133295885+intron-Distal3.261573.25653K562CSTF2T
chr12133268582133268676+intron-Distal6.499029.34483K562DHX30
chr12133295446133295541+3'-UTR,intron-Distal4.158837.96122HepG2CSTF2T
chr12133287679133287800+5'-UTR,intron-Distal,intron-Proximal3.936333.25414K562RBFOX2
chr12133271880133271967+intron-Distal4.854894.52980K562DDX6
chr12133295791133295929+intron-Distal3.514313.04470K562FUS
chr12133295206133295288+intron-Distal,intron-Proximal6.4172915.83315K562GTF2F1
chr12133296222133296277+intron-Distal3.445835.88643HepG2RBFOX2
chr12133295269133295344+intron-Distal,intron-Proximal4.616877.80986K562PRPF8
chr12133295212133295284+intron-Distal,intron-Proximal3.686413.15816HepG2PRPF4
chr12133295202133295280+intron-Distal,intron-Proximal5.303929.30883K562EWSR1
chr12133287418133287602+5'-UTR,CDS,intron-Distal3.845425.59242K562DDX3X
chr12133295390133295467+3'-UTR,CDS,intron-Distal3.413134.01575K562NONO
chr12133272194133272271+intron-Distal5.7949811.76519K562DHX30
chr12133295202133295285+intron-Distal,intron-Proximal6.6945270.26611K562RBFOX2
chr12133295203133295272+intron-Distal,intron-Proximal4.7477610.42975HepG2PRPF8
chr12133271881133271970+intron-Distal6.4945513.20578K562PHF6
chr12133295210133295300+intron-Distal,intron-Proximal3.565344.40109K562AKAP8L
chr12133295790133295866+intron-Distal3.226515.23529K562EWSR1
chr12133294739133294854+intron-Distal,intron-Proximal5.5769322.44319K562RBFOX2
chr12133295386133295447+3'-UTR,CDS,intron-Distal3.949755.40390K562EWSR1
chr12133296043133296076+intron-Distal3.103313.23466HepG2CSTF2T
chr12133295605133295706+3'-UTR,intron-Distal3.281395.76705HepG2CSTF2T
chr12133295209133295274+intron-Distal,intron-Proximal4.830327.75663K562CSTF2T
chr12133295215133295269+intron-Distal,intron-Proximal4.570217.08156K562PRPF8
chr12133296329133296380+intron-Distal4.633665.52571HepG2RBFOX2
chr12133271898133271977+intron-Distal6.0333920.94705K562DDX52
chr12133295194133295279+intron-Distal,intron-Proximal7.5510451.08556HepG2RBFOX2
chr12133295279133295365+CDS,intron-Distal,intron-Proximal4.536588.35027K562FAM120A
chr12133295197133295277+intron-Distal,intron-Proximal6.1942210.13101K562DDX6
chr12133296023133296077+intron-Distal6.1544318.78962K562RBFOX2
chr12133296035133296103+intron-Distal4.188904.70168K562CSTF2T
chr12133271899133271980+intron-Distal5.9213424.74848K562DHX30
chr12133295587133295631+3'-UTR,intron-Distal6.0070716.72280K562RBFOX2
chr12133295519133295569+3'-UTR,intron-Distal5.8179814.01891K562RBFOX2
chr12133295315133295360+CDS,intron-Distal,intron-Proximal4.807366.62122HepG2RBFOX2
chr12133272135133272184+intron-Distal5.6309015.28746K562DDX52
chr12133295212133295273+intron-Distal,intron-Proximal4.255414.41148HepG2GTF2F1
chr12133295631133295713+3'-UTR,intron-Distal6.8246628.59528K562RBFOX2
chr12133272218133272259+intron-Distal3.875685.52511K562PHF6
chr12133272184133272276+intron-Distal6.4610726.84680K562DDX52
chr12133296077133296131+intron-Distal6.0326816.72280K562RBFOX2
chr12133296222133296280+intron-Distal5.0244911.07064K562RBFOX2
chr12133295872133295917+intron-Distal4.169229.43001K562RBFOX2
chr12133271877133271998+intron-Distal4.993517.53307K562TBRG4
chr12133295201133295273+intron-Distal,intron-Proximal5.6562219.37572HepG2FAM120A
chr12133294911133294992+intron-Distal5.7795813.43272HepG2RBFOX2
chr12133272175133272227+intron-Distal4.511093.78860K562AKAP1
chr12133295214133295270+intron-Distal,intron-Proximal5.3850811.88393K562FAM120A
chr12133296224133296273+intron-Distal3.084614.58795K562EWSR1
chr12133287414133287609+5'-UTR,CDS,intron-Distal4.2737134.23676HepG2DDX3X
chr12133295200133295338+intron-Distal,intron-Proximal7.34078400.00000K562DROSHA
chr12133295792133295841+intron-Distal6.1653614.23250K562RBFOX2
chr12133272122133272190+intron-Distal6.2309310.53873K562PHF6
chr12133268555133268673+intron-Distal4.174686.06724K562DDX52
chr12133295394133295453+3'-UTR,intron-Distal3.6242110.18782K562RBFOX2
chr12133295802133295861+intron-Distal4.156406.49292HepG2CSTF2T
chr12133271911133271983+intron-Distal3.959783.19863HepG2EIF3D
chr12133295266133295356+CDS,intron-Distal,intron-Proximal4.388675.19780K562NONO
chr12133295217133295270+intron-Distal,intron-Proximal4.228135.10749K562FTO
chr12133278009133278129+intron-Distal,intron-Proximal3.410983.34990HepG2PTBP1
chr12133296219133296276+intron-Distal5.2880210.10424HepG2CSTF2T
chr12133295804133295910+intron-Distal4.7413313.46195HepG2RBFOX2
chr12133271894133271982+intron-Distal4.197074.13758HepG2AKAP1
chr12133272115133272170+intron-Distal4.173514.02152K562TBRG4
chr12133293956133294024+intron-Proximal5.034474.86316HepG2FAM120A
chr12133293934133293964+intron-Proximal3.986393.19125K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PXMP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PXMP2 is not available on ENCORE database.

  • 58 RBPs can affect the levels of PXMP2.  








The Knockdown/knockout RNA-Seq assay for PXMP2 is not available on ENCORE database.





58 RBPs can affect the gene expression of PXMP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PXMP2ENSG00000176894.5292.03750158.750400.879304.271603.11920HepG2ABCF1
PXMP2ENSG00000176894.5196.47420290.89020-0.566102.301701.81190HepG2AKAP1
PXMP2ENSG00000176894.5166.40680240.67380-0.532402.143201.44820HepG2ASCC1
PXMP2ENSG00000176894.5137.73310250.26530-0.861606.000405.05180HepG2AUH
PXMP2ENSG00000176894.564.10380133.93270-1.063004.277303.34290HepG2CALR
PXMP2ENSG00000176894.543.18880111.76960-1.371804.852303.96270HepG2CPSF6
PXMP2ENSG00000176894.5131.54830201.40930-0.614502.967202.30550HepG2CELF1
PXMP2ENSG00000176894.585.66890182.47520-1.090903.149702.33240HepG2DDX55
PXMP2ENSG00000176894.5124.14330239.40970-0.947504.822304.02730HepG2DDX6
PXMP2ENSG00000176894.5287.06520171.366000.744205.082104.21430HepG2DKC1
PXMP2ENSG00000176894.5170.55740121.310300.491502.041601.46470HepG2DNAJC2
PXMP2ENSG00000176894.575.68870137.35490-0.859803.151601.96180HepG2AGO1
PXMP2ENSG00000176894.5127.53530230.08330-0.851304.175403.45570HepG2EIF2S1
PXMP2ENSG00000176894.5152.54490247.59700-0.698802.717502.03420HepG2EIF4B
PXMP2ENSG00000176894.5190.30910287.32240-0.594303.664002.98800HepG2ETF1
PXMP2ENSG00000176894.553.33910111.95580-1.069702.286701.37090HepG2FTO
PXMP2ENSG00000176894.5369.56870252.728400.548202.848001.94310HepG2G3BP2
PXMP2ENSG00000176894.578.68230126.70650-0.687401.910001.37190HepG2GPKOW
PXMP2ENSG00000176894.5155.65570241.11090-0.631302.782102.08180HepG2HNRNPK
PXMP2ENSG00000176894.561.28150129.58920-1.080403.964002.48440HepG2HSPD1
PXMP2ENSG00000176894.5134.70580235.21910-0.804204.064603.20090HepG2PABPC4
PXMP2ENSG00000176894.5146.19050234.04080-0.678902.204401.65190HepG2PCBP1
PXMP2ENSG00000176894.597.40110144.08310-0.564902.018701.35070HepG2PRPF4
PXMP2ENSG00000176894.586.42460140.62790-0.702402.073201.36990HepG2PRPF8
PXMP2ENSG00000176894.5158.04270217.61420-0.461502.240601.69490HepG2PUM1
PXMP2ENSG00000176894.5337.95850182.446600.889308.598207.61340HepG2PUS1
PXMP2ENSG00000176894.5154.75540257.95630-0.737102.319001.73760HepG2QKI
PXMP2ENSG00000176894.5120.76350194.98140-0.691203.155402.24530HepG2RBM15
PXMP2ENSG00000176894.5122.62930240.15160-0.969606.516605.80290HepG2RBM22
PXMP2ENSG00000176894.5145.27220234.08190-0.688301.950501.37640HepG2RBM25
PXMP2ENSG00000176894.570.30950114.94510-0.709202.209701.65390HepG2RPS19
PXMP2ENSG00000176894.561.58620139.09670-1.175403.901902.98760HepG2RRP9
PXMP2ENSG00000176894.562.72610119.68880-0.932203.119502.37200HepG2SF3B1
PXMP2ENSG00000176894.5141.46830247.96800-0.809702.720502.13340HepG2SF3B4
PXMP2ENSG00000176894.5152.40400271.24820-0.831705.778105.12760HepG2SRFBP1
PXMP2ENSG00000176894.5335.00320235.517800.508203.449802.89150HepG2SSB
PXMP2ENSG00000176894.553.71910121.70360-1.179903.269402.19000HepG2TFIP11
PXMP2ENSG00000176894.5125.06860213.75450-0.773202.459801.66920HepG2TIA1
PXMP2ENSG00000176894.5328.23960723.47520-1.1402013.0607011.91980K562AQR
PXMP2ENSG00000176894.5142.48200244.77060-0.780703.970602.92260K562BOP1
PXMP2ENSG00000176894.5666.12160881.41630-0.404002.572101.63260K562CELF1
PXMP2ENSG00000176894.5381.46160484.56910-0.345202.259301.66120K562DDX47
PXMP2ENSG00000176894.5216.65430330.80740-0.610603.566702.52210K562EFTUD2
PXMP2ENSG00000176894.5295.46040199.223100.568503.221902.36600K562EIF3G
PXMP2ENSG00000176894.5482.06920315.868500.609802.417301.62470K562FIP1L1
PXMP2ENSG00000176894.5167.27920264.80600-0.662703.405402.45330K562FMR1
PXMP2ENSG00000176894.5146.03370224.44350-0.620102.583401.70320K562FTO
PXMP2ENSG00000176894.5432.57610336.840000.360802.187001.63760K562FXR1
PXMP2ENSG00000176894.576.30670174.72020-1.195205.902304.78350K562G3BP2
PXMP2ENSG00000176894.5157.66020248.49280-0.656403.223002.36790K562GPKOW
PXMP2ENSG00000176894.5192.11880342.04460-0.832202.687502.09780K562HNRNPC
PXMP2ENSG00000176894.5162.28430322.92800-0.992706.874204.84600K562HNRNPK
PXMP2ENSG00000176894.5432.74510259.866200.735603.586502.51490K562HNRNPM
PXMP2ENSG00000176894.5465.53080611.90020-0.394403.048102.11260K562HNRNPU
PXMP2ENSG00000176894.599.83140212.17320-1.087705.157003.82990K562KRR1
PXMP2ENSG00000176894.5453.05210339.134900.417702.668201.76260K562MATR3
PXMP2ENSG00000176894.5157.91610302.35350-0.937106.554605.03130K562PCBP2
PXMP2ENSG00000176894.5565.03330358.659500.655602.898602.05710K562PPIG
PXMP2ENSG00000176894.5657.59450446.388500.558804.242803.59240K562PUS1
PXMP2ENSG00000176894.5355.57170455.19170-0.356302.317301.56530K562SF3A3
PXMP2ENSG00000176894.5109.00650236.31340-1.116306.256504.76230K562SF3B1
PXMP2ENSG00000176894.5108.48840181.57390-0.743003.789502.78320K562SF3B4
PXMP2ENSG00000176894.5502.07410323.709400.633105.096304.14000K562SRSF1
PXMP2ENSG00000176894.5108.33240182.02390-0.748703.248401.51230K562TBRG4
PXMP2ENSG00000176894.5105.97620174.82990-0.722203.356502.47390K562U2AF2
PXMP2ENSG00000176894.5664.91190857.24670-0.366502.770801.47980K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PXMP2 is not available on ENCORE database.





1 RBPs can affect the splicing of PXMP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPXMP2ENSG00000176894.5chr12+133294272133294384133294024133294150133294575133294706-0.101000.008920.07412excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PXMP2 is not avaliable on ENCORE database.