PPP1R9B

General Information

Gene Name       : PPP1R9B
Gene ID             : ENSG00000108819.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PPP1R9B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PPP1R9BENSG00000108819.1011.3024.0617.68ENCSR000AEF
HepG2PPP1R9BENSG00000108819.1016.229.2612.74ENCSR985KAT
K562PPP1R9BENSG00000108819.1018.4316.5817.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PPP1R9B is not avaliable on ENCORE database.



Proteins bound to RNA
  • PPP1R9B RNA is bound by 27 proteins.  







eCLIP assay for PPP1R9B is not avaliable on ENCORE database.





27 proteins are bound to PPP1R9B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174821117448211248-3'-UTR,intron-Distal5.8642774.87798K562PUM2
chr174821132348211375-3'-UTR,intron-Distal4.635383.91009K562HNRNPK
chr174821119748211254-3'-UTR,intron-Distal5.186765.98124HepG2DDX55
chr174821170948211759-3'-UTR,intron-Distal3.129033.77853HepG2IGF2BP1
chr174821112048211174-3'-UTR,intron-Distal6.16165400.00000K562PUM2
chr174821111948211164-3'-UTR,intron-Distal3.8365112.69715K562PABPC4
chr174821184048211894-3'-UTR,intron-Distal3.037846.07920K562FAM120A
chr174821119748211246-3'-UTR,intron-Distal3.676973.92010K562DDX55
chr174821210748212145-3'-UTR,intron-Distal4.911463.92758K562PCBP1
chr174821139248211439-3'-UTR,intron-Distal4.282283.98488K562TIA1
chr174821256848212616-3'-UTR,intron-Distal6.4857218.52659HepG2PCBP2
chr174821261648212657-3'-UTR,intron-Distal6.0163111.06447HepG2PCBP2
chr174821128748211387-3'-UTR,intron-Distal4.170679.59880HepG2DDX55
chr174821228448212355-3'-UTR,intron-Distal3.572933.08588HepG2IGF2BP3
chr174821118448211235-3'-UTR,intron-Distal3.182493.85040HepG2IGF2BP1
chr174821194148212021-3'-UTR,intron-Distal3.524565.96194HepG2PCBP2
chr174821119048211260-3'-UTR,intron-Distal4.667397.70376K562DDX6
chr174821136948211440-3'-UTR,intron-Distal5.30372400.00000K562PUM2
chr174821137548211431-3'-UTR,intron-Distal3.278773.45841K562HNRNPK
chr174821128748211369-3'-UTR,intron-Distal4.4725743.15981K562PUM2
chr174821130148211382-3'-UTR,intron-Distal5.3490719.52418HepG2PCBP2
chr174821128448211389-3'-UTR,intron-Distal3.0668810.86758K562DDX55
chr174821230248212380-3'-UTR,intron-Distal3.355883.69775K562YBX3
chr174821119648211261-3'-UTR,intron-Distal4.5657411.77823K562PABPC4
chr174821139148211444-3'-UTR,intron-Distal3.274484.14131HepG2DDX59
chr174821192648211947-3'-UTR,intron-Distal4.136673.20319K562UPF1
chr174821130248211368-3'-UTR,intron-Distal3.712626.95618K562PUM1
chr174822781348227966-5'-UTR,CDS,intron-Distal,intron-Proximal4.0118028.24396HepG2DDX3X
chr174822787348227968-5'-UTR,CDS,intron-Distal,intron-Proximal3.615708.28216K562DDX3X
chr174822762248227664-CDS,intron-Distal3.795425.37959K562GEMIN5
chr174821341048213539-CDS,intron-Distal3.7504910.62851K562UCHL5
chr174822773248227830-CDS,intron-Distal3.257983.92957K562DDX3X
chr174821681348216871-CDS,intron-Distal,intron-Proximal3.037664.88483K562ZNF622
chr174821752748217593-CDS,intron-Distal3.434247.03897K562LIN28B
chr174822247748222506-CDS,intron-Distal,intron-Proximal3.589064.40383K562UCHL5
chr174821691648216946-CDS,intron-Distal4.181455.89622K562FXR2
chr174822759348227704-CDS,intron-Distal3.871668.38344K562PUM1
chr174821754548217592-CDS,intron-Distal3.013914.88659HepG2LIN28B
chr174821745648217514-CDS,intron-Distal,intron-Proximal3.980303.79347HepG2GRWD1
chr174822708848227153-CDS,intron-Distal4.353266.21592K562PUM1
chr174822103848221083-CDS,intron-Distal3.992745.77244K562UCHL5
chr174821689648216942-CDS,intron-Distal4.124266.11943K562UCHL5
chr174822096648221038-CDS,intron-Distal3.183585.71803K562UCHL5
chr174822674148226790-CDS,intron-Distal3.381765.51859K562SLTM
chr174822096148221015-CDS,intron-Distal,intron-Proximal4.715895.87377HepG2PPIG
chr174822781048227869-CDS,intron-Distal3.376693.99908K562BUD13
chr174821746048217517-CDS,intron-Distal3.202326.32494K562UCHL5
chr174822763648227692-CDS,intron-Distal3.273695.06168K562SLTM
chr174821858848218672-CDS,intron-Distal,intron-Proximal3.107783.73413HepG2PPIG
chr174821687948216916-CDS,intron-Distal4.823345.24786K562FXR2
chr174822104248221087-CDS,intron-Distal,intron-Proximal3.267183.59112HepG2PPIG
chr174821861948218636-CDS,intron-Distal,intron-Proximal4.743369.04436K562AQR
chr174821796648218067-intron-Distal3.347894.25794K562HNRNPK
chr174822790248227955-intron-Distal,intron-Proximal4.239893.20319K562UPF1
chr174821655748216628-intron-Distal,intron-Proximal4.538676.99120K562AQR
chr174822791648227972-intron-Distal,intron-Proximal3.3040112.80914K562SLTM
chr174821328648213333-intron-Distal,intron-Proximal4.895794.65563K562AQR
chr174821858948218619-intron-Distal,intron-Proximal5.8923411.02807K562AQR
chr174821832048218378-intron-Distal3.693123.06617K562HNRNPK
chr174821572448215820-intron-Distal4.282963.98095HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PPP1R9B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PPP1R9B is not available on ENCORE database.

  • 73 RBPs can affect the levels of PPP1R9B.  








The Knockdown/knockout RNA-Seq assay for PPP1R9B is not available on ENCORE database.





73 RBPs can affect the gene expression of PPP1R9B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PPP1R9BENSG00000108819.91084.07450900.902100.266902.692102.09180HepG2ACO1
PPP1R9BENSG00000108819.9594.06830808.80040-0.445202.976202.16180HepG2ASCC1
PPP1R9BENSG00000108819.9720.817801058.54020-0.554403.149602.33110HepG2CALR
PPP1R9BENSG00000108819.91194.02470900.719800.406606.085805.16990HepG2CKAP4
PPP1R9BENSG00000108819.9956.804801348.10520-0.494604.402703.55320HepG2CPSF6
PPP1R9BENSG00000108819.9370.34660543.55220-0.553502.924501.51690HepG2CSTF2T
PPP1R9BENSG00000108819.9785.12690585.156800.424003.166502.44430HepG2DDX21
PPP1R9BENSG00000108819.91162.95550804.545800.531403.947303.21980HepG2DDX6
PPP1R9BENSG00000108819.9833.06050633.022100.396104.755403.93790HepG2DNAJC2
PPP1R9BENSG00000108819.9392.21620539.11090-0.458902.306601.30230HepG2AGO1
PPP1R9BENSG00000108819.91030.36320798.098700.368403.046502.19280HepG2EIF4G2
PPP1R9BENSG00000108819.9417.91160557.79990-0.416502.698801.56710HepG2FASTKD2
PPP1R9BENSG00000108819.9551.31890721.97290-0.389102.882302.08060HepG2FUBP3
PPP1R9BENSG00000108819.9707.57140860.11180-0.281602.516201.58060HepG2HDGF
PPP1R9BENSG00000108819.9677.87320455.159200.574502.842701.45180HepG2HNRNPA0
PPP1R9BENSG00000108819.91132.917901458.42440-0.364402.609201.99480HepG2HNRNPLL
PPP1R9BENSG00000108819.91051.88260712.451400.562008.758007.72570HepG2HNRNPU
PPP1R9BENSG00000108819.9751.084801122.73540-0.580004.102102.59220HepG2HSPD1
PPP1R9BENSG00000108819.91131.24290812.914300.476603.751902.97600HepG2IGF2BP2
PPP1R9BENSG00000108819.91137.56970867.435700.391002.345901.76230HepG2MATR3
PPP1R9BENSG00000108819.91129.23410837.220700.431603.360102.52110HepG2NOL12
PPP1R9BENSG00000108819.9426.14440790.47380-0.891409.313908.00820HepG2PABPC4
PPP1R9BENSG00000108819.91057.19930836.994100.336902.458901.87920HepG2PCBP1
PPP1R9BENSG00000108819.9776.83870635.449300.289702.210001.54390HepG2PPIL4
PPP1R9BENSG00000108819.91199.24820851.732800.493607.232006.42910HepG2PTBP1
PPP1R9BENSG00000108819.91248.41520799.275800.643207.091006.19310HepG2PUF60
PPP1R9BENSG00000108819.91189.00710917.629200.373704.904404.12630HepG2PUS1
PPP1R9BENSG00000108819.91583.286901219.775100.376204.382603.77010HepG2RBM22
PPP1R9BENSG00000108819.9634.19680837.11280-0.400503.013002.31330HepG2RBM25
PPP1R9BENSG00000108819.9841.88010602.350600.482904.164203.42600HepG2RPS19
PPP1R9BENSG00000108819.9828.96480579.940300.515303.596502.68790HepG2RPS2
PPP1R9BENSG00000108819.9888.11540634.468000.485106.517705.59140HepG2SAFB2
PPP1R9BENSG00000108819.9460.72570604.44520-0.391702.340901.47280HepG2SERBP1
PPP1R9BENSG00000108819.91744.446001443.586700.273001.958601.35860HepG2SF3B1
PPP1R9BENSG00000108819.9896.51730739.894600.276902.760102.11630HepG2SMN1
PPP1R9BENSG00000108819.9769.28550925.52100-0.266701.990201.57090HepG2SRSF1
PPP1R9BENSG00000108819.91014.445401553.20570-0.614605.119803.72040HepG2SRSF3
PPP1R9BENSG00000108819.9998.27370789.274200.338802.782802.15510HepG2SRSF5
PPP1R9BENSG00000108819.9790.933301027.80020-0.377904.271503.43510HepG2SRSF7
PPP1R9BENSG00000108819.9832.043201196.04670-0.523507.416506.65530HepG2SSB
PPP1R9BENSG00000108819.91297.09340897.531700.531105.824704.98240HepG2SUCLG1
PPP1R9BENSG00000108819.9962.35930692.270700.475105.016004.38390HepG2TIAL1
PPP1R9BENSG00000108819.9916.41700698.468700.391704.373603.69670HepG2TRIM56
PPP1R9BENSG00000108819.91794.596501174.699800.611307.273406.26200HepG2U2AF1
PPP1R9BENSG00000108819.91088.14770826.773800.396202.407901.63120HepG2UBE2L3
PPP1R9BENSG00000108819.9195.81510373.57320-0.931902.128001.46240HepG2UCHL5
PPP1R9BENSG00000108819.9707.05460966.47110-0.450906.275005.33020HepG2ZC3H8
PPP1R9BENSG00000108819.9451.817801208.22940-1.4191054.4975052.86770HepG2ZNF622
PPP1R9BENSG00000108819.91287.63670987.363500.383002.922801.83510K562CCAR1
PPP1R9BENSG00000108819.91491.785601105.365600.432403.596702.05080K562DHX30
PPP1R9BENSG00000108819.91611.512401010.008900.673905.390903.57220K562EEF2
PPP1R9BENSG00000108819.91420.45290975.661900.541805.094503.83760K562EFTUD2
PPP1R9BENSG00000108819.91625.762301044.292300.638504.678203.28940K562EIF3D
PPP1R9BENSG00000108819.9646.72650500.874600.368602.917202.10080K562EIF3G
PPP1R9BENSG00000108819.92930.005702328.610700.331304.956903.71810K562EIF4G2
PPP1R9BENSG00000108819.9387.52980535.84920-0.467503.062901.37350K562FASTKD2
PPP1R9BENSG00000108819.91389.88050983.026000.499607.190006.27760K562FXR1
PPP1R9BENSG00000108819.9151.04010344.30640-1.188808.826807.41700K562G3BP2
PPP1R9BENSG00000108819.91680.506601259.361000.416104.469903.73000K562HNRNPC
PPP1R9BENSG00000108819.92023.865602813.99610-0.475502.124501.42380K562HSPD1
PPP1R9BENSG00000108819.9948.16180681.482700.476403.105401.99750K562IGF2BP2
PPP1R9BENSG00000108819.91031.82720715.659900.527805.100603.95260K562MAGOH
PPP1R9BENSG00000108819.91742.859802087.47020-0.260303.349002.46280K562MTPAP
PPP1R9BENSG00000108819.9958.42520636.659300.590004.904603.59050K562PCBP2
PPP1R9BENSG00000108819.91197.31600695.349600.7839011.6278010.32620K562PTBP1
PPP1R9BENSG00000108819.92251.736002702.37570-0.263202.546101.52440K562PUM1
PPP1R9BENSG00000108819.91139.719601441.59730-0.339002.038301.55890K562PUS1
PPP1R9BENSG00000108819.91251.95430666.455900.9095012.8748010.87310K562RBM22
PPP1R9BENSG00000108819.9947.04380670.822700.497402.732001.73430K562RPS3
PPP1R9BENSG00000108819.91901.217101386.717600.455105.009303.55040K562SAFB
PPP1R9BENSG00000108819.9650.56910357.851100.8622010.421208.71000K562SF3B4
PPP1R9BENSG00000108819.9288.56820459.92050-0.672505.088002.76450K562SND1
PPP1R9BENSG00000108819.9981.00930681.736400.525003.974503.13280K562SRSF1
PPP1R9BENSG00000108819.9944.06020647.545400.543805.229703.70000K562SRSF4
PPP1R9BENSG00000108819.9341.74170516.66950-0.596305.050003.23020K562SSB
PPP1R9BENSG00000108819.91834.909202723.26610-0.569602.730801.38260K562SSRP1
PPP1R9BENSG00000108819.9177.75570337.96340-0.927004.435102.42440K562TAF15
PPP1R9BENSG00000108819.91250.36110689.828200.8579011.7885010.15980K562TARDBP
PPP1R9BENSG00000108819.9954.44590665.452300.520204.801703.67750K562TIA1
PPP1R9BENSG00000108819.9925.94790653.322500.503003.974602.62870K562TRA2A
PPP1R9BENSG00000108819.91985.654402459.36790-0.308705.000104.06440K562UPF1
PPP1R9BENSG00000108819.91642.831202104.41580-0.357203.735002.71760K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PPP1R9B is not available on ENCORE database.





2 RBPs can affect the splicing of PPP1R9B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPPP1R9BENSG00000108819.9chr17-4821745748217724482174574821759348218633482187380.112000.000000.00000longerHepG2U2AF2
A3SSPPP1R9BENSG00000108819.9chr17-4821745748217724482174574821759348218633482187380.121000.000050.00822longerHepG2RBM22

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PPP1R9B is not avaliable on ENCORE database.