POMGNT2

General Information

Gene Name       : POMGNT2
Gene ID             : ENSG00000144647.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: POMGNT2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POMGNT2ENSG00000144647.50.000.080.04ENCSR000AEF
HepG2POMGNT2ENSG00000144647.517.285.9811.63ENCSR985KAT
K562POMGNT2ENSG00000144647.59.736.928.32ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POMGNT2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • POMGNT2 RNA is bound by 4 proteins.  







eCLIP assay for POMGNT2 is not avaliable on ENCORE database.





4 proteins are bound to POMGNT2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34312294443123018-3'-UTR,intron-Distal4.393288.20930HepG2DDX3X
chr34314744343147526-5'-UTR,intron-Distal,intron-Proximal6.3064224.37905HepG2DDX3X
chr34314735743147443-5'-UTR,intron-Distal,intron-Proximal4.8683025.39942HepG2DDX3X
chr34312281043122855-CDS,intron-Distal5.163015.29846HepG2DDX3X
chr34312226243122311-CDS,intron-Distal3.692363.19539K562YBX3
chr34314702343147098-intron-Distal4.256673.19125K562GTF2F1
chr34314687043146957-intron-Distal3.821163.37414K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POMGNT2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POMGNT2 is not available on ENCORE database.

  • 67 RBPs can affect the levels of POMGNT2.  








The Knockdown/knockout RNA-Seq assay for POMGNT2 is not available on ENCORE database.





67 RBPs can affect the gene expression of POMGNT2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POMGNT2ENSG00000144647.5633.68560295.315901.101409.959309.01640HepG2AKAP1
POMGNT2ENSG00000144647.5723.44030471.352100.618003.952202.77420HepG2CCAR1
POMGNT2ENSG00000144647.5256.06730477.66190-0.899505.821404.85720HepG2CPSF6
POMGNT2ENSG00000144647.5439.26590282.825700.635103.232302.56300HepG2DDX3X
POMGNT2ENSG00000144647.5333.74040542.41520-0.700703.219302.16630HepG2DDX59
POMGNT2ENSG00000144647.5135.24500243.10520-0.846002.335501.76410HepG2DDX6
POMGNT2ENSG00000144647.5203.46710289.04800-0.506502.843302.15770HepG2DKC1
POMGNT2ENSG00000144647.5271.37970180.054700.591804.037703.27980HepG2DNAJC2
POMGNT2ENSG00000144647.5205.64150285.53560-0.473502.570701.75820HepG2EIF4G1
POMGNT2ENSG00000144647.5377.45120523.26700-0.471304.087203.38150HepG2ETF1
POMGNT2ENSG00000144647.5678.97640383.098800.825506.032404.93860HepG2FIP1L1
POMGNT2ENSG00000144647.5272.88070478.44940-0.810102.882601.84520HepG2FTO
POMGNT2ENSG00000144647.5452.38010260.561700.795804.166003.32960HepG2FXR1
POMGNT2ENSG00000144647.5168.3277095.299800.820603.030301.86300HepG2GRSF1
POMGNT2ENSG00000144647.5245.24410516.76740-1.0753010.271709.14790HepG2HNRNPLL
POMGNT2ENSG00000144647.5358.17210264.249800.438702.144301.30700HepG2HNRNPM
POMGNT2ENSG00000144647.5358.20520202.648500.821707.911806.92660HepG2HNRNPU
POMGNT2ENSG00000144647.5272.83540206.998700.398302.285101.61090HepG2ILF2
POMGNT2ENSG00000144647.5343.59250200.417300.777604.032702.51610HepG2KRR1
POMGNT2ENSG00000144647.5735.64280498.011600.562703.427502.50190HepG2LARP4
POMGNT2ENSG00000144647.5289.21140189.228500.611902.829401.68380HepG2LARP7
POMGNT2ENSG00000144647.5404.22510268.220800.591602.559301.94800HepG2NCBP2
POMGNT2ENSG00000144647.5324.89500190.058400.773403.945402.23950HepG2NKRF
POMGNT2ENSG00000144647.5376.10490287.044300.389801.964601.31890HepG2NOL12
POMGNT2ENSG00000144647.5281.50810458.18330-0.702704.792903.81810HepG2NSUN2
POMGNT2ENSG00000144647.5227.13580143.861600.658802.850001.60040HepG2PKM
POMGNT2ENSG00000144647.5290.04710180.746300.682204.727703.79090HepG2PPIL4
POMGNT2ENSG00000144647.5201.68930269.41510-0.417702.020201.35180HepG2PRPF4
POMGNT2ENSG00000144647.5453.81020290.833600.641806.273905.45670HepG2PUM1
POMGNT2ENSG00000144647.5597.30720290.633901.0392013.1867011.78830HepG2PUM2
POMGNT2ENSG00000144647.565.47080175.72230-1.424402.835302.12280HepG2RAVER1
POMGNT2ENSG00000144647.5436.75670196.475201.152403.270901.30550HepG2RBM17
POMGNT2ENSG00000144647.5279.92180169.309100.725303.160802.51030HepG2RPS19
POMGNT2ENSG00000144647.5212.25760103.376301.037805.160604.06760HepG2RPS3A
POMGNT2ENSG00000144647.5245.47740180.467400.443802.191001.60590HepG2SAFB2
POMGNT2ENSG00000144647.5471.41880189.883401.311804.272002.50790HepG2SF1
POMGNT2ENSG00000144647.5320.82790210.455300.608204.562303.77220HepG2SMN1
POMGNT2ENSG00000144647.5358.57640169.620201.079903.280901.82700HepG2SNRNP200
POMGNT2ENSG00000144647.5310.15990569.14880-0.875805.433204.32740HepG2SNRNP70
POMGNT2ENSG00000144647.5394.08110493.95910-0.325902.245101.77830HepG2SRFBP1
POMGNT2ENSG00000144647.5381.08800270.502200.494403.172102.50900HepG2SRSF5
POMGNT2ENSG00000144647.5155.53710247.53770-0.670404.196903.54340HepG2SRSF9
POMGNT2ENSG00000144647.5487.14100307.656500.662906.359205.48550HepG2SUCLG1
POMGNT2ENSG00000144647.5173.98510266.11580-0.613102.694202.02530HepG2SUPV3L1
POMGNT2ENSG00000144647.5367.37750196.340800.903803.336702.16790HepG2TBRG4
POMGNT2ENSG00000144647.5268.82950196.910300.449102.076001.63020HepG2TIAL1
POMGNT2ENSG00000144647.5282.46310198.671200.507603.141102.54870HepG2TRIM56
POMGNT2ENSG00000144647.5595.57120197.413301.593006.088804.56640HepG2U2AF2
POMGNT2ENSG00000144647.5600.76520308.568100.9611014.2659013.06750HepG2UTP3
POMGNT2ENSG00000144647.5723.74850411.292900.815209.593008.61690K562AGGF1
POMGNT2ENSG00000144647.5562.79730427.971600.395002.513301.89020K562AKAP8L
POMGNT2ENSG00000144647.5601.93070437.130700.461403.008402.40120K562AQR
POMGNT2ENSG00000144647.5443.43670688.89670-0.635606.292404.83300K562CELF1
POMGNT2ENSG00000144647.5568.86850460.510700.304802.079701.33140K562DKC1
POMGNT2ENSG00000144647.5293.02360183.676800.673703.367802.35730K562EFTUD2
POMGNT2ENSG00000144647.5336.72110196.561300.776503.448702.28250K562EIF3D
POMGNT2ENSG00000144647.5691.87670560.256400.304302.200601.35780K562EIF4G2
POMGNT2ENSG00000144647.5443.15920300.261700.561503.775202.77490K562FIP1L1
POMGNT2ENSG00000144647.5790.71570466.941100.759808.141306.83220K562GRSF1
POMGNT2ENSG00000144647.5522.37710316.379800.723302.720001.51540K562HNRNPA2B1
POMGNT2ENSG00000144647.5594.13380434.765300.450502.873901.77350K562MAK16
POMGNT2ENSG00000144647.5786.66380508.792200.628606.722205.18640K562MBNL1
POMGNT2ENSG00000144647.5412.88460597.17440-0.532404.066002.69640K562MSI2
POMGNT2ENSG00000144647.5285.94860178.741300.677803.096802.30260K562PRPF8
POMGNT2ENSG00000144647.5580.26410424.410600.451102.915402.36090K562PUS1
POMGNT2ENSG00000144647.5575.50130413.540600.476703.945803.25300K562RBM15
POMGNT2ENSG00000144647.5304.36500181.994900.741803.627502.69000K562RPS19
POMGNT2ENSG00000144647.5363.38500250.925000.534103.068401.92730K562SAFB
POMGNT2ENSG00000144647.5620.59480253.006901.294406.314104.25700K562SF1
POMGNT2ENSG00000144647.5300.84880208.619500.528102.523001.55520K562SRFBP1
POMGNT2ENSG00000144647.5274.85340393.94270-0.519302.893501.50040K562SSRP1
POMGNT2ENSG00000144647.5227.87900360.29890-0.660903.814402.30500K562STAU1
POMGNT2ENSG00000144647.5436.60100282.444300.628203.963202.97770K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POMGNT2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of POMGNT2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for POMGNT2 is not avaliable on ENCORE database.