OGFOD3

General Information

Gene Name       : OGFOD3
Gene ID             : ENSG00000181396.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: OGFOD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878OGFOD3ENSG00000181396.122.626.914.77ENCSR000AEF
HepG2OGFOD3ENSG00000181396.1247.1920.0133.60ENCSR985KAT
K562OGFOD3ENSG00000181396.1216.8112.3414.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for OGFOD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • OGFOD3 RNA is bound by 17 proteins.  







eCLIP assay for OGFOD3 is not avaliable on ENCORE database.





17 proteins are bound to OGFOD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr178034818580348262-3'-UTR,intron-Distal4.615395.81569HepG2GRSF1
chr178034914080349218-3'-UTR,intron-Distal3.802665.48330K562UPF1
chr178036425680364343-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.738804.54206HepG2PRPF8
chr178034852980348601-3'-UTR,intron-Distal4.708866.10062HepG2GRSF1
chr178034994680349980-3'-UTR,intron-Distal4.183843.61011HepG2AKAP1
chr178034895280349052-3'-UTR,intron-Distal4.5936113.89495HepG2UPF1
chr178034892180349029-3'-UTR,intron-Distal4.046068.41991HepG2AKAP1
chr178034912380349218-3'-UTR,intron-Distal6.2180620.22720HepG2UPF1
chr178034904480349094-3'-UTR,intron-Distal3.832793.19526HepG2CSTF2T
chr178035027280350313-3'-UTR,CDS,intron-Distal,intron-Proximal3.802726.36332HepG2UPF1
chr178035003980350079-3'-UTR,intron-Distal,intron-Proximal4.257173.87930K562UPF1
chr178034993480350001-3'-UTR,intron-Distal,intron-Proximal5.226968.87118HepG2UPF1
chr178034888080348933-3'-UTR,intron-Distal4.939237.69327HepG2UPF1
chr178035002380350107-3'-UTR,intron-Distal,intron-Proximal,polyA_site4.5817711.43825HepG2AKAP1
chr178034855180348586-3'-UTR,intron-Distal4.239963.95192HepG2UPF1
chr178035001580350106-3'-UTR,intron-Distal,intron-Proximal,polyA_site5.7824013.62665HepG2UPF1
chr178034968780349753-3'-UTR,intron-Distal4.989557.76785HepG2AKAP1
chr178034830580348361-3'-UTR,intron-Distal4.188543.56485HepG2GRSF1
chr178034811080348185-3'-UTR,intron-Distal3.866475.52402HepG2GRSF1
chr178037332480373404-5'-UTR,CDS,intron-Distal,intron-Proximal4.4239821.40587HepG2DDX3X
chr178037635480376466-5'-UTR,CDS,intron-Distal,intron-Proximal3.960903.58858HepG2NCBP2
chr178037628680376351-5'-UTR,CDS,intron-Distal5.0089513.15062HepG2DDX3X
chr178037327380373325-5'-UTR,CDS,intron-Distal,intron-Proximal3.042163.73413HepG2PPIG
chr178036932780369375-5'-UTR,CDS,intron-Distal,intron-Proximal4.091935.80295HepG2PPIG
chr178037635180376463-5'-UTR,CDS,intron-Distal,intron-Proximal6.1052730.61394HepG2DDX3X
chr178036926480369353-5'-UTR,CDS,intron-Distal,intron-Proximal3.226225.90285HepG2PRPF8
chr178037340480373501-5'-UTR,CDS,intron-Distal,intron-Proximal4.8419422.70472HepG2DDX3X
chr178037625180376329-5'-UTR,CDS,intron-Distal5.052196.01989HepG2PRPF8
chr178037036980370479-intron-Distal6.5204114.92586HepG2DDX59
chr178037014680370190-intron-Distal5.201696.27056HepG2DDX59
chr178037611180376175-intron-Distal4.137397.41879HepG2FAM120A
chr178035517880355280-intron-Distal5.6532513.90560HepG2HNRNPK
chr178037609380376176-intron-Distal4.094443.86455HepG2GTF2F1
chr178037307580373188-intron-Distal,intron-Proximal4.924884.15474K562XRCC6
chr178036310980363175-intron-Distal,intron-Proximal3.847675.42009HepG2EFTUD2
chr178037603880376176-intron-Distal4.435394.36329HepG2PRPF4
chr178037611180376170-intron-Distal4.493914.36078K562GTF2F1
chr178037034180370519-intron-Distal6.0518716.75245HepG2HNRNPK
chr178037065280370721-intron-Distal5.570189.47875HepG2DDX59
chr178037008780370117-intron-Distal4.770454.91906HepG2DDX59
chr178035103080351110-intron-Distal,intron-Proximal3.286066.89846HepG2XPO5
chr178037013880370220-intron-Distal4.925387.46068HepG2HNRNPK
chr178035043180350490-intron-Distal3.244593.90287HepG2SF3B4
chr178037314380373197-intron-Distal,intron-Proximal5.175355.16714HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for OGFOD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for OGFOD3 is not available on ENCORE database.

  • 65 RBPs can affect the levels of OGFOD3.  








The Knockdown/knockout RNA-Seq assay for OGFOD3 is not available on ENCORE database.





65 RBPs can affect the gene expression of OGFOD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
OGFOD3ENSG00000181396.8796.97320643.188900.309201.815601.32170HepG2BOP1
OGFOD3ENSG00000181396.8791.98850969.29080-0.291503.062502.37020HepG2CKAP4
OGFOD3ENSG00000181396.8584.26660461.004300.341702.424301.47420HepG2YBX3
OGFOD3ENSG00000181396.8614.35060800.44100-0.381703.102202.42940HepG2CELF1
OGFOD3ENSG00000181396.81344.72400992.360000.438302.708902.09780HepG2DDX6
OGFOD3ENSG00000181396.8622.65400452.637700.460004.050603.21260HepG2DNAJC21
OGFOD3ENSG00000181396.8356.39510558.29560-0.647604.242103.13920HepG2EIF3D
OGFOD3ENSG00000181396.8649.79410508.316200.354202.072601.46190HepG2HNRNPC
OGFOD3ENSG00000181396.81011.56650783.809600.367902.381701.75060HepG2HNRNPL
OGFOD3ENSG00000181396.8691.40460504.954300.453304.344003.59880HepG2HNRNPU
OGFOD3ENSG00000181396.8622.27310515.791300.270702.067601.42300HepG2ILF2
OGFOD3ENSG00000181396.8644.370501069.86870-0.731504.037003.28760HepG2MATR3
OGFOD3ENSG00000181396.81184.50540853.288200.473106.107104.97490HepG2NOL12
OGFOD3ENSG00000181396.8625.80640499.797800.324302.449601.64790HepG2PARN
OGFOD3ENSG00000181396.81256.17220989.575600.344103.164002.52310HepG2PCBP1
OGFOD3ENSG00000181396.8729.91830450.376000.696509.241307.93830HepG2PPIL4
OGFOD3ENSG00000181396.8361.22350466.24190-0.368202.020001.32590HepG2PRPF8
OGFOD3ENSG00000181396.8797.338601006.97770-0.336803.393802.80090HepG2PTBP1
OGFOD3ENSG00000181396.81151.74000864.767900.413307.061906.20350HepG2PUM1
OGFOD3ENSG00000181396.81112.43420864.103800.364303.648102.88300HepG2PUM2
OGFOD3ENSG00000181396.8838.46560987.51440-0.236102.113701.55730HepG2PUS1
OGFOD3ENSG00000181396.8733.217501220.70060-0.7354013.0641012.10570HepG2RBM22
OGFOD3ENSG00000181396.8998.26070690.621900.531404.227802.98410HepG2RBM27
OGFOD3ENSG00000181396.8553.40600759.80480-0.457303.108202.39080HepG2RPLP0
OGFOD3ENSG00000181396.8693.16150500.221800.470502.467901.71070HepG2RPS3A
OGFOD3ENSG00000181396.8347.55210461.18150-0.408102.251601.53520HepG2RRP9
OGFOD3ENSG00000181396.8596.60950449.674500.407803.715402.98800HepG2SAFB2
OGFOD3ENSG00000181396.8671.16370471.040500.510702.935301.58550HepG2SART3
OGFOD3ENSG00000181396.8987.49100781.165200.338004.289703.44370HepG2SLBP
OGFOD3ENSG00000181396.8684.17350524.380100.383603.873203.13300HepG2SMN1
OGFOD3ENSG00000181396.8959.099801378.70660-0.523609.415808.64190HepG2SRFBP1
OGFOD3ENSG00000181396.8718.712901094.24200-0.606409.337208.58360HepG2SRSF1
OGFOD3ENSG00000181396.8433.21030680.30620-0.651104.196002.93560HepG2SRSF3
OGFOD3ENSG00000181396.8963.39350804.344500.260202.514601.91360HepG2SRSF5
OGFOD3ENSG00000181396.8952.518601196.99180-0.329603.989003.39730HepG2SSB
OGFOD3ENSG00000181396.81082.25030914.707700.242602.625402.01620HepG2SUCLG1
OGFOD3ENSG00000181396.8658.76120983.64390-0.578407.458706.61310HepG2TAF15
OGFOD3ENSG00000181396.8674.61630490.595900.459403.881503.31040HepG2TIAL1
OGFOD3ENSG00000181396.8906.19020495.047500.8721017.4813016.22400HepG2TRIM56
OGFOD3ENSG00000181396.81172.76070795.898200.559206.058504.69930HepG2TUFM
OGFOD3ENSG00000181396.8701.24370845.11350-0.269202.319001.75950HepG2UTP3
OGFOD3ENSG00000181396.8633.01130448.060900.498402.624801.56390HepG2XPO5
OGFOD3ENSG00000181396.8541.10410648.18530-0.260501.912001.33920HepG2ZC3H8
OGFOD3ENSG00000181396.8878.93370664.400500.403602.690301.72510K562AKAP8
OGFOD3ENSG00000181396.8800.06650629.125800.346702.452001.83610K562AKAP8L
OGFOD3ENSG00000181396.8568.00660747.44800-0.396102.329001.78360K562AQR
OGFOD3ENSG00000181396.8551.48790417.845900.400302.850301.87580K562BCLAF1
OGFOD3ENSG00000181396.8842.80380676.629000.316702.559401.49540K562CPEB4
OGFOD3ENSG00000181396.8494.86960348.915300.504102.936201.99610K562EFTUD2
OGFOD3ENSG00000181396.8794.11900632.235000.328802.686201.97550K562EIF2S2
OGFOD3ENSG00000181396.81160.27120919.424200.335603.107702.11510K562EIF4G2
OGFOD3ENSG00000181396.8518.04050391.925300.402402.352501.57060K562FIP1L1
OGFOD3ENSG00000181396.875.29510187.59840-1.317003.543402.72090K562G3BP2
OGFOD3ENSG00000181396.8524.28750349.823500.583603.552001.90520K562GEMIN5
OGFOD3ENSG00000181396.8461.15400322.354000.516502.827301.88650K562HNRNPM
OGFOD3ENSG00000181396.8453.66530342.073300.407202.438401.64630K562MAGOH
OGFOD3ENSG00000181396.8927.59350747.920500.310502.412201.57130K562MBNL1
OGFOD3ENSG00000181396.8271.62470599.06780-1.1411012.1731010.43470K562PCBP3
OGFOD3ENSG00000181396.8213.27700459.49720-1.1073012.8255011.16530K562POLR2G
OGFOD3ENSG00000181396.8632.89630444.898100.508403.618602.66180K562PPIG
OGFOD3ENSG00000181396.8429.19770332.343700.368902.159801.56130K562PTBP1
OGFOD3ENSG00000181396.8763.288701003.13920-0.394203.066502.20860K562PUF60
OGFOD3ENSG00000181396.8436.13490307.690900.503203.175802.03700K562SRSF5
OGFOD3ENSG00000181396.8484.86400329.741900.556103.770802.93920K562TARDBP
OGFOD3ENSG00000181396.8530.42490318.071700.737707.112005.70050K562TIA1
OGFOD3ENSG00000181396.8438.21660312.108200.489502.992601.84870K562TRA2A
OGFOD3ENSG00000181396.8495.59370354.332100.484002.688101.50270K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for OGFOD3 is not available on ENCORE database.





11 RBPs can affect the splicing of OGFOD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEOGFOD3ENSG00000181396.8chr17-803522068035241980350316803504108035607180356195-0.311000.000000.00028excludedHepG2RBM22
SEOGFOD3ENSG00000181396.8chr17-8035220680352419803503168035041080356071803561950.265000.000280.06918includedK562WDR43
SEOGFOD3ENSG00000181396.8chr17-8035220680352419803498858035041080356071803561950.395000.000160.00298includedHepG2U2AF2
SEOGFOD3ENSG00000181396.8chr17-8035220680352419803503168035041080356071803561950.208000.011630.09153includedK562AQR
SEOGFOD3ENSG00000181396.8chr17-803522068035241980349885803504108035607180356195-0.213000.000900.02326excludedHepG2SRSF1
SEOGFOD3ENSG00000181396.8chr17-803522068035241980350316803504108035607180356195-0.284000.000080.01047excludedHepG2IGF2BP3
SEOGFOD3ENSG00000181396.8chr17-803522068035241980349885803504108035607180356195-0.319000.000000.00052excludedHepG2XRCC6
MXEOGFOD3ENSG00000181396.8chr17-8036429380364358803693308036940680363199803632568037327380373503-0.265000.000700.044152includedK562LARP7
MXEOGFOD3ENSG00000181396.8chr17-8036429380364358803672438036728680363199803632568036933080369406-0.100000.000270.022272includedHepG2LARP4
MXEOGFOD3ENSG00000181396.8chr17-80364293803643588037327380373503803631998036325680376287803765130.145000.000530.025351includedK562AKAP8L
MXEOGFOD3ENSG00000181396.8chr17-80369330803694068037327380373503803642938036435880376287803764520.342000.004760.061371includedK562HNRNPUL1
MXEOGFOD3ENSG00000181396.8chr17-80369330803694068037328180373503803642938036435880376287803765130.331000.007300.079131includedK562HNRNPUL1
MXEOGFOD3ENSG00000181396.8chr17-80364293803643588037327380373503803631998036325680376287803765130.139000.000090.004561includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for OGFOD3 is not avaliable on ENCORE database.