NSMAF

General Information

Gene Name       : NSMAF
Gene ID             : ENSG00000035681.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NSMAF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NSMAFENSG00000035681.846.9040.0543.47ENCSR000AEF
HepG2NSMAFENSG00000035681.819.7119.1319.42ENCSR985KAT
K562NSMAFENSG00000035681.845.0045.2045.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NSMAF is not avaliable on ENCORE database.



Proteins bound to RNA
  • NSMAF RNA is bound by 14 proteins.  







eCLIP assay for NSMAF is not avaliable on ENCORE database.





14 proteins are bound to NSMAF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr85954401059544084-3'-UTR,CDS,intron-Distal,intron-Proximal4.693516.46853K562EFTUD2
chr85954786959547933-3'-UTR,CDS,intron-Distal,intron-Proximal4.741305.68196HepG2BCLAF1
chr85953621559536269-CDS,intron-Distal,intron-Proximal4.784594.13847K562AQR
chr85951374459513845-CDS,intron-Distal,intron-Proximal4.916468.57350K562KHSRP
chr85951245359512532-CDS,intron-Distal,intron-Proximal3.210573.90146K562KHSRP
chr85953626759536295-CDS,intron-Distal,intron-Proximal4.955734.75872K562DDX24
chr85950201059502105-CDS,intron-Distal,intron-Proximal4.741305.68196HepG2BCLAF1
chr85953622659536288-CDS,intron-Distal,intron-Proximal4.635684.85612K562PRPF8
chr85951238259512453-CDS,intron-Distal,intron-Proximal3.588803.55754HepG2U2AF2
chr85951387059513908-CDS,intron-Distal,intron-Proximal3.954745.74136K562DDX24
chr85951185559511924-CDS,intron-Distal,intron-Proximal3.689884.22563K562UCHL5
chr85950019459500255-CDS,intron-Distal,intron-Proximal4.739257.50842K562DDX24
chr85954763459547692-intron-Distal4.204433.49003K562PRPF8
chr85954825959548305-intron-Distal3.778043.45805K562KHSRP
chr85952064259520723-intron-Distal4.102044.93238K562QKI
chr85954038159540460-intron-Distal4.6810910.93642K562EXOSC5
chr85954036859540485-intron-Distal3.598753.83677K562HNRNPM
chr85952055959520716-intron-Distal3.870804.33990HepG2QKI
chr85954182059541911-intron-Distal4.523296.44643K562SAFB2
chr85953925159539359-intron-Distal3.702836.76604K562SAFB2
chr85954168659541760-intron-Distal3.306814.15505K562SAFB2
chr85954811559548254-intron-Distal,intron-Proximal4.3603512.94987K562KHSRP
chr85953852259538631-intron-Distal4.320409.05048K562SAFB2
chr85954260959542686-intron-Distal3.813393.85646K562PPIL4
chr85954011459540179-intron-Distal4.087515.80877K562EXOSC5
chr85954160359541686-intron-Distal4.691427.33276K562SAFB2
chr85953778759537825-intron-Distal3.634983.22483K562SAFB2
chr85949773559497822-intron-Distal3.197403.51696K562KHSRP
chr85951478459514900-intron-Distal,intron-Proximal6.6110012.53103K562QKI
chr85951213159512205-intron-Distal,intron-Proximal4.117358.20650K562KHSRP
chr85954145359541517-intron-Distal4.093514.58306K562SAFB2
chr85954953359549597-intron-Distal4.015383.88340K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NSMAF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NSMAF is not available on ENCORE database.

  • 63 RBPs can affect the levels of NSMAF.  








The Knockdown/knockout RNA-Seq assay for NSMAF is not available on ENCORE database.





63 RBPs can affect the gene expression of NSMAF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NSMAFENSG00000035681.31116.07510596.473600.903809.248608.33910HepG2AKAP1
NSMAFENSG00000035681.3369.80950493.53840-0.416402.110801.42020HepG2ASCC1
NSMAFENSG00000035681.3709.72560944.68810-0.412602.219001.35420HepG2CCAR1
NSMAFENSG00000035681.3587.19150828.35160-0.496403.835703.03830HepG2CPSF6
NSMAFENSG00000035681.3380.16200501.85970-0.400702.737001.72480HepG2YBX3
NSMAFENSG00000035681.3577.37630697.59160-0.272902.049401.48130HepG2CELF1
NSMAFENSG00000035681.3570.99260750.18180-0.393804.527003.61420HepG2DAZAP1
NSMAFENSG00000035681.3593.76820479.803300.307402.569801.76350HepG2DDX19B
NSMAFENSG00000035681.3580.45770940.65580-0.696503.821402.68000HepG2DDX59
NSMAFENSG00000035681.3518.35960678.01120-0.387402.400601.45560HepG2DDX5
NSMAFENSG00000035681.3324.71840496.34510-0.612205.711104.80170HepG2DKC1
NSMAFENSG00000035681.3209.38420471.85400-1.1722011.2414010.09390HepG2EIF2S1
NSMAFENSG00000035681.3392.22970521.47010-0.410901.942001.40240HepG2EIF4A3
NSMAFENSG00000035681.3918.60610740.014700.311802.592201.77770HepG2EIF4G1
NSMAFENSG00000035681.3363.96630506.93440-0.478003.324302.41000HepG2EWSR1
NSMAFENSG00000035681.31137.71200756.524200.588604.842003.84780HepG2FIP1L1
NSMAFENSG00000035681.3530.83780829.78230-0.644502.327701.40300HepG2FTO
NSMAFENSG00000035681.3591.23320938.98670-0.667405.667604.77350HepG2GPKOW
NSMAFENSG00000035681.3514.20040683.38840-0.410404.400303.56500HepG2HNRNPL
NSMAFENSG00000035681.3428.72440896.09360-1.0636013.6933012.43640HepG2HNRNPLL
NSMAFENSG00000035681.3512.69520749.69520-0.548202.038601.41100HepG2IGF2BP1
NSMAFENSG00000035681.3272.12440429.20700-0.657404.759602.63710HepG2CCAR2
NSMAFENSG00000035681.3662.61420997.22910-0.589804.082903.06990HepG2LARP4
NSMAFENSG00000035681.3283.75060794.56880-1.4855023.0109021.16140HepG2NSUN2
NSMAFENSG00000035681.3241.92330411.92470-0.767803.706302.66810HepG2PABPC1
NSMAFENSG00000035681.3709.09730554.022700.355902.816302.26440HepG2PTBP1
NSMAFENSG00000035681.3461.99450710.06460-0.620106.050205.21340HepG2PUF60
NSMAFENSG00000035681.3875.20970525.599500.735604.043803.19950HepG2RAVER1
NSMAFENSG00000035681.3645.93400823.99460-0.351202.704102.19000HepG2RBM22
NSMAFENSG00000035681.3561.16870819.86110-0.546902.070801.47010HepG2RPLP0
NSMAFENSG00000035681.3354.14360516.24900-0.543702.591801.67640HepG2RPS10
NSMAFENSG00000035681.3564.46490406.698800.472803.078502.08470HepG2SERBP1
NSMAFENSG00000035681.3686.06450886.94740-0.370502.458701.79110HepG2SF3B1
NSMAFENSG00000035681.3535.17560680.77480-0.347203.307202.55080HepG2SLBP
NSMAFENSG00000035681.3602.35920986.88750-0.712304.665403.64000HepG2SNRNP70
NSMAFENSG00000035681.3549.73500701.04660-0.350803.198702.53380HepG2SRSF5
NSMAFENSG00000035681.3364.87500505.32800-0.469802.367001.73550HepG2SUPV3L1
NSMAFENSG00000035681.3828.78390617.286200.425004.442103.71180HepG2UTP3
NSMAFENSG00000035681.31052.06080703.184100.5811010.781109.87750HepG2ZNF622
NSMAFENSG00000035681.31141.758901515.42620-0.408503.887203.11130K562AKAP8L
NSMAFENSG00000035681.31008.863501480.18860-0.553106.274305.45000K562AQR
NSMAFENSG00000035681.32852.942701861.995200.6155015.9996014.55170K562DDX47
NSMAFENSG00000035681.3755.96220571.654000.403102.790501.43910K562DNAJC21
NSMAFENSG00000035681.3580.53650861.07420-0.568807.605905.56690K562EIF2S1
NSMAFENSG00000035681.3798.68710540.732700.562602.934901.89690K562EIF3A
NSMAFENSG00000035681.31341.70820865.952500.631605.747604.18120K562EIF3D
NSMAFENSG00000035681.31185.923701632.27940-0.460903.622302.64170K562FIP1L1
NSMAFENSG00000035681.31254.84120851.739200.558908.497707.50840K562FXR1
NSMAFENSG00000035681.31199.87260905.505200.406002.331201.69000K562G3BP2
NSMAFENSG00000035681.31332.847601636.43980-0.296002.233501.55060K562GRSF1
NSMAFENSG00000035681.3748.63400536.721600.480003.516801.84710K562KHDRBS1
NSMAFENSG00000035681.31852.453902438.89570-0.396803.801201.47980K562CCAR2
NSMAFENSG00000035681.31853.216801196.688000.630905.312503.96430K562KRR1
NSMAFENSG00000035681.31668.041602257.01970-0.436303.898202.56170K562MSI2
NSMAFENSG00000035681.3973.124901363.27570-0.486405.281004.29720K562NSUN2
NSMAFENSG00000035681.3876.628401153.28540-0.395702.719601.38220K562PCBP1
NSMAFENSG00000035681.3746.50000917.33130-0.297302.053401.36390K562POLR2G
NSMAFENSG00000035681.31170.080901852.81950-0.663106.336705.00810K562PPIG
NSMAFENSG00000035681.32989.454702456.936800.282903.573202.35020K562PUM1
NSMAFENSG00000035681.31061.369401464.35830-0.464306.165405.30600K562RBM15
NSMAFENSG00000035681.3713.33600941.95350-0.401103.745502.74570K562SF3B4
NSMAFENSG00000035681.32315.141601580.141300.550903.560501.55800K562SMN1
NSMAFENSG00000035681.31379.53630920.058300.584305.745904.55500K562SYNCRIP
NSMAFENSG00000035681.3885.466101137.57690-0.361502.475501.80400K562TARDBP
NSMAFENSG00000035681.31192.806601584.50180-0.409706.115704.19690K562TROVE2
NSMAFENSG00000035681.31763.963401445.500300.287202.952802.21010K562UPF1
NSMAFENSG00000035681.31784.836701286.106100.472708.805307.38230K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NSMAF is not available on ENCORE database.





8 RBPs can affect the splicing of NSMAF :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENSMAFENSG00000035681.3chr8-5954979259549948595480265954810559555542595556320.143000.000070.00125includedK562AQR
SENSMAFENSG00000035681.3chr8-5954979259549948595480265954810559555542595556320.126000.000200.02488includedHepG2SRSF7
SENSMAFENSG00000035681.3chr8-595497925954994859548026595481055955554259555632-0.090000.000000.00114excludedK562DROSHA
SENSMAFENSG00000035681.3chr8-595497925954994859548026595481055955554259555632-0.087000.000190.02099excludedK562HNRNPUL1
SENSMAFENSG00000035681.3chr8-595125285951258059512308595124295951384359513907-0.446000.000000.00000excludedK562U2AF2
SENSMAFENSG00000035681.3chr8-5954979259549948595480265954810559555542595556320.106000.000010.00026includedK562HNRNPC
A3SSNSMAFENSG00000035681.3chr8-5951041859510497595104185951046159511790595119350.064000.000230.00186longerK562AQR
A3SSNSMAFENSG00000035681.3chr8-5949821059498349594982105949832059498456594985590.098000.000030.00028longerK562AQR
RINSMAFENSG00000035681.3chr8-595020805950263359502080595021175950256559502633-0.241000.006930.08192excludedK562SF3B4
RINSMAFENSG00000035681.3chr8-5949821059498559594982105949832059498456594985590.138000.000000.00002includedK562AQR
RINSMAFENSG00000035681.3chr8-5949821059498559594982105949832059498456594985590.073000.000900.02021includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NSMAF is not avaliable on ENCORE database.