NDUFS4

General Information

Gene Name       : NDUFS4
Gene ID             : ENSG00000164258.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFS4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFS4ENSG00000164258.1162.0361.1661.59ENCSR000AEF
HepG2NDUFS4ENSG00000164258.1161.9079.6570.78ENCSR985KAT
K562NDUFS4ENSG00000164258.1152.1756.7354.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFS4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFS4 RNA is bound by 17 proteins.  







eCLIP assay for NDUFS4 is not avaliable on ENCORE database.





17 proteins are bound to NDUFS4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr55294221752942236+3'-UTR,CDS,intron-Proximal4.5277210.94373K562RPS3
chr55294218852942227+3'-UTR,CDS3.761623.87469HepG2BCLAF1
chr55297905152979145+3'-UTR4.385067.91848K562PUM2
chr55295438052954397+3'-UTR,CDS,intron-Distal,intron-Proximal6.4407611.12815K562RPS3
chr55297893552978997+3'-UTR,CDS,intron-Proximal4.055255.67291HepG2U2AF2
chr55297898152979035+3'-UTR,CDS3.782974.37595HepG2LARP4
chr55297900452979077+3'-UTR,CDS4.229627.09561HepG2BCLAF1
chr55297903552979096+3'-UTR,CDS5.6230312.68958HepG2LARP4
chr55294215752942230+3'-UTR,CDS3.900563.88696K562GRWD1
chr55297895552978995+3'-UTR,CDS3.091703.18789HepG2BCLAF1
chr55289928152899332+5'-UTR,CDS,intron-Proximal3.2417713.61786K562DDX3X
chr55285648252856560+5'-UTR,CDS3.212028.75414K562DDX3X
chr55296527252965388+intron-Distal3.855754.78196HepG2PTBP1
chr55285660852856704+intron-Distal,intron-Proximal4.788307.35412HepG2TIAL1
chr55287659952876701+intron-Distal3.396103.89405HepG2PTBP1
chr55292558452925643+intron-Distal4.199934.28663HepG2SUGP2
chr55288842652888472+intron-Distal3.254573.66782HepG2HNRNPM
chr55291333752913464+intron-Distal4.8372010.21863HepG2PTBP1
chr55292585052925932+intron-Distal4.994047.39957HepG2SUGP2
chr55287458552874679+intron-Distal5.461848.50063K562PTBP1
chr55289568052895755+intron-Distal4.892646.39049HepG2U2AF2
chr55292614052926210+intron-Distal3.411413.39827HepG2MATR3
chr55291327252913337+intron-Distal4.690813.74583HepG2PTBP1
chr55287698052877029+intron-Distal4.450824.30178K562PTBP1
chr55291307452913206+intron-Distal5.423148.13723HepG2PTBP1
chr55292360052923649+intron-Distal5.288738.36828K562EXOSC5
chr55290534652905430+intron-Distal4.506985.04879HepG2SUGP2
chr55291699552917064+intron-Distal3.446884.70224K562KHSRP
chr55288777852887848+intron-Distal4.482445.58025K562HNRNPM
chr55290576352905821+intron-Distal4.022843.63454HepG2SUGP2
chr55293026152930361+intron-Distal3.860353.02234K562KHSRP
chr55292586152925920+intron-Distal4.431734.66737HepG2MATR3
chr55289972852899834+intron-Distal4.066483.97888HepG2HNRNPL
chr55294672952946804+intron-Distal3.901583.71397K562KHSRP
chr55285676252856882+intron-Distal4.530844.64592HepG2HNRNPM
chr55292080852920869+intron-Distal3.064726.13708HepG2SUGP2
chr55292467052924738+intron-Distal5.261099.68086K562EXOSC5
chr55292844052928499+intron-Distal3.151733.23296HepG2SUGP2
chr55293041752930495+intron-Distal4.185133.45799HepG2U2AF2
chr55293042052930502+intron-Distal5.102676.97910HepG2PCBP2
chr55292642252926472+intron-Distal3.966073.28841HepG2PTBP1
chr55292080852920856+intron-Distal4.118213.59909K562EXOSC5
chr55292878452928874+intron-Distal4.826174.85866HepG2QKI
chr55291339852913452+intron-Distal5.546807.72823K562PTBP1
chr55291310152913188+intron-Distal5.478059.44534K562PTBP1
chr55289527352895369+intron-Distal3.720303.26999K562KHSRP
chr55290994852910039+intron-Distal4.120294.10688K562KHSRP
chr55287709552877172+intron-Distal4.865405.41368HepG2PTBP1
chr55291326952913323+intron-Distal5.346538.42544K562PTBP1
chr55291693352916995+intron-Distal4.466996.28383K562KHSRP
chr55297749452977600+intron-Distal4.470284.12401HepG2U2AF2
chr55288794252887979+intron-Distal4.919806.41304K562EXOSC5
chr55287313052873237+intron-Distal3.480875.06177HepG2SUGP2
chr55292323152923278+intron-Distal3.903793.01456K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFS4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFS4 is not available on ENCORE database.

  • 71 RBPs can affect the levels of NDUFS4.  








The Knockdown/knockout RNA-Seq assay for NDUFS4 is not available on ENCORE database.





71 RBPs can affect the gene expression of NDUFS4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFS4ENSG00000164258.71102.18260914.879000.268602.534601.87280HepG2AUH
NDUFS4ENSG00000164258.7417.67370277.459100.590003.723703.04030HepG2BOP1
NDUFS4ENSG00000164258.7419.73010605.09940-0.527702.379501.48220HepG2CCAR1
NDUFS4ENSG00000164258.7962.72100729.287600.400505.256404.28050HepG2DAZAP1
NDUFS4ENSG00000164258.7529.05240405.268000.384402.315501.48690HepG2DDX24
NDUFS4ENSG00000164258.7326.03050457.97400-0.490302.570401.67920HepG2EEF2
NDUFS4ENSG00000164258.7550.81780381.366800.530302.929401.78510HepG2AGO1
NDUFS4ENSG00000164258.7735.05530971.64270-0.402602.576302.00400HepG2EIF2S1
NDUFS4ENSG00000164258.7325.51350461.62280-0.504003.595802.26080HepG2EIF2S2
NDUFS4ENSG00000164258.7832.247201073.72900-0.367502.098701.53950HepG2EIF4A3
NDUFS4ENSG00000164258.7713.440001045.52200-0.551403.381202.62350HepG2EIF4B
NDUFS4ENSG00000164258.7737.10980582.469200.339602.277301.51990HepG2EWSR1
NDUFS4ENSG00000164258.7598.67040394.681100.601005.121303.63840HepG2FASTKD2
NDUFS4ENSG00000164258.7640.343701083.50000-0.758808.106806.96940HepG2FXR1
NDUFS4ENSG00000164258.7615.085501005.02490-0.708406.640905.63140HepG2G3BP1
NDUFS4ENSG00000164258.7803.560101067.06760-0.409202.883101.96910HepG2G3BP2
NDUFS4ENSG00000164258.7214.87690331.00880-0.623403.455202.44170HepG2GEMIN5
NDUFS4ENSG00000164258.7196.76140288.71530-0.553202.405301.80440HepG2GPKOW
NDUFS4ENSG00000164258.7489.55080275.528400.829206.546605.62390HepG2HNRNPLL
NDUFS4ENSG00000164258.7738.863201021.55730-0.467403.432602.68840HepG2IGF2BP2
NDUFS4ENSG00000164258.7664.35830544.893100.285902.361001.41890HepG2KIF1C
NDUFS4ENSG00000164258.7346.77320665.72350-0.940907.506705.48990HepG2KRR1
NDUFS4ENSG00000164258.7605.941201083.87890-0.839009.416808.22100HepG2MAGOH
NDUFS4ENSG00000164258.7339.689301089.92050-1.6819028.2967026.46310HepG2MATR3
NDUFS4ENSG00000164258.7642.821201115.57400-0.795308.377707.30490HepG2NCBP2
NDUFS4ENSG00000164258.7278.92840437.26720-0.648602.606401.54800HepG2NONO
NDUFS4ENSG00000164258.7732.481601008.07880-0.460705.829305.00030HepG2PCBP1
NDUFS4ENSG00000164258.7399.924901025.77990-1.3589036.2867034.76250HepG2PTBP1
NDUFS4ENSG00000164258.7499.30130690.32900-0.467403.554502.89040HepG2PUF60
NDUFS4ENSG00000164258.7563.32000732.82400-0.379503.961703.27970HepG2PUM1
NDUFS4ENSG00000164258.7738.08560570.602800.371202.853201.98380HepG2RBM15
NDUFS4ENSG00000164258.7554.233501141.57620-1.0425023.8798022.60220HepG2NELFE
NDUFS4ENSG00000164258.7698.433901063.25640-0.606309.305908.27510HepG2RECQL
NDUFS4ENSG00000164258.7681.11780494.647000.461403.180802.45630HepG2RPLP0
NDUFS4ENSG00000164258.7238.89890361.75280-0.598603.818803.10710HepG2RPS19
NDUFS4ENSG00000164258.7445.42960579.20800-0.378902.048001.35320HepG2RPS2
NDUFS4ENSG00000164258.7232.01350363.06410-0.646003.878502.76440HepG2SERBP1
NDUFS4ENSG00000164258.7365.35470272.705400.421901.944401.34620HepG2SF3B1
NDUFS4ENSG00000164258.7718.513901067.92970-0.571708.304707.36610HepG2SF3B4
NDUFS4ENSG00000164258.7392.06330542.36270-0.468202.301501.43750HepG2SMNDC1
NDUFS4ENSG00000164258.71204.62960991.577700.280703.203002.67680HepG2SRFBP1
NDUFS4ENSG00000164258.7676.477701114.70360-0.7205013.1340012.26890HepG2SRSF1
NDUFS4ENSG00000164258.7417.79600681.61040-0.706109.119208.07110HepG2SRSF5
NDUFS4ENSG00000164258.7657.58800906.88460-0.463705.938105.18560HepG2SRSF9
NDUFS4ENSG00000164258.7476.96850860.97450-0.8521011.4748010.57010HepG2SSB
NDUFS4ENSG00000164258.7648.44560775.16930-0.257501.985101.44140HepG2SUCLG1
NDUFS4ENSG00000164258.7358.94080672.05790-0.904807.363105.23530HepG2SUGP2
NDUFS4ENSG00000164258.7703.535601001.98390-0.510206.107005.32860HepG2TAF15
NDUFS4ENSG00000164258.7729.74800525.664900.473202.882202.24160HepG2U2AF1
NDUFS4ENSG00000164258.7389.74790279.979500.477102.443201.72980HepG2UCHL5
NDUFS4ENSG00000164258.7349.78690434.84530-0.314001.994501.38510HepG2UPF1
NDUFS4ENSG00000164258.7385.05240584.63280-0.602503.401802.22500HepG2XRCC6
NDUFS4ENSG00000164258.71402.33070797.767500.8137018.9517017.58890K562AGGF1
NDUFS4ENSG00000164258.71205.38140876.621400.459404.388403.08610K562AKAP8
NDUFS4ENSG00000164258.71295.52580830.112100.642107.930506.77020K562AKAP8L
NDUFS4ENSG00000164258.71138.08890870.985400.385804.143803.00500K562ATP5C1
NDUFS4ENSG00000164258.7148.61780232.01400-0.642603.339302.15810K562CCAR1
NDUFS4ENSG00000164258.72010.086401556.826100.368503.733802.59440K562CELF1
NDUFS4ENSG00000164258.71130.84640893.266900.340103.495302.49450K562DKC1
NDUFS4ENSG00000164258.7678.60530481.917200.493703.818502.81200K562FIP1L1
NDUFS4ENSG00000164258.7463.49800642.76020-0.471704.219203.49520K562FXR1
NDUFS4ENSG00000164258.71177.37140963.184600.289601.974601.32990K562GRSF1
NDUFS4ENSG00000164258.7709.93740396.415300.840607.912106.21050K562HNRNPM
NDUFS4ENSG00000164258.7581.24480859.53610-0.564405.233203.99040K562HNRNPU
NDUFS4ENSG00000164258.71071.97310653.333300.714308.229806.87170K562HSPD1
NDUFS4ENSG00000164258.71274.77580880.960200.533005.901204.59190K562KIF1C
NDUFS4ENSG00000164258.71175.02890843.292600.478504.448302.99130K562MAK16
NDUFS4ENSG00000164258.7457.03520840.82420-0.8795012.7234010.61920K562MATR3
NDUFS4ENSG00000164258.71390.27370986.897500.494305.275703.93570K562MBNL1
NDUFS4ENSG00000164258.71099.01650691.743300.667805.116203.79260K562NAA15
NDUFS4ENSG00000164258.7400.76790621.49520-0.633004.623003.54870K562PCBP3
NDUFS4ENSG00000164258.7316.20490476.71860-0.592304.458003.43930K562POLR2G
NDUFS4ENSG00000164258.7872.34740547.116800.673007.013905.59670K562PPIG
NDUFS4ENSG00000164258.7536.64320818.50360-0.609006.872305.86120K562PTBP1
NDUFS4ENSG00000164258.71004.732301381.16520-0.459104.427903.40230K562PUF60
NDUFS4ENSG00000164258.71569.15950823.251300.9305014.1931013.00590K562PUS1
NDUFS4ENSG00000164258.71197.57270802.127900.578108.139907.15200K562RBM15
NDUFS4ENSG00000164258.7485.68990812.12810-0.741707.764806.50580K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFS4 is not available on ENCORE database.





12 RBPs can affect the splicing of NDUFS4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFS4ENSG00000164258.7chr5+5290055352900725528992815289936052942062529422350.055000.000350.01658includedK562PRPF8
SENDUFS4ENSG00000164258.7chr5+528992815289936052856464528565905294206252942235-0.065000.000010.00291excludedHepG2PRPF8
SENDUFS4ENSG00000164258.7chr5+528992685289936052856464528565905294206252942235-0.061000.000030.00058excludedK562AQR
SENDUFS4ENSG00000164258.7chr5+5290055352900725528992815289936052942062529422350.071000.000010.00273includedHepG2SRSF7
SENDUFS4ENSG00000164258.7chr5+5290055352900725528992815289936052942062529422350.076000.000000.00026includedHepG2PTBP1
SENDUFS4ENSG00000164258.7chr5+5290055352900725528992815289936052942062529422350.108000.000000.00000includedHepG2MATR3
SENDUFS4ENSG00000164258.7chr5+5290055352900725528992815289936052942062529422350.071000.000000.00010includedHepG2DDX6
SENDUFS4ENSG00000164258.7chr5+5290055352900725528992815289936052942062529422350.068000.000070.01209includedHepG2SUPV3L1
SENDUFS4ENSG00000164258.7chr5+5290055352900725528992815289936052942062529422350.082000.000010.00042includedK562HNRNPC
MXENDUFS4ENSG00000164258.7chr5+52942062529422355295438052954454529005535290072552978947529791680.134000.000000.000001includedHepG2PTBP1
MXENDUFS4ENSG00000164258.7chr5+52900534529007255294200452942235528992815289936052978947529791680.518000.000000.000011includedK562AQR
MXENDUFS4ENSG00000164258.7chr5+52900534529007255295438052954454528992815289936052978947529791680.055000.000000.000001includedK562AQR
MXENDUFS4ENSG00000164258.7chr5+52900534529007255294202352942235528992815289936052978947529791680.490000.000000.000031includedK562AQR
MXENDUFS4ENSG00000164258.7chr5+52900534529007255294206252942235528992815289936052978947529791680.068000.000000.000001includedK562AQR
MXENDUFS4ENSG00000164258.7chr5+52900534529007255295433552954454528992815289936052978947529791680.063000.000000.000001includedK562AQR
MXENDUFS4ENSG00000164258.7chr5+52900534529007255294201252942235528992815289936052978947529791680.502000.000000.000031includedK562AQR
MXENDUFS4ENSG00000164258.7chr5+52900553529007255294206252942235528992815289936052978947529791680.056000.004230.091311includedK562EFTUD2
MXENDUFS4ENSG00000164258.7chr5+52899281528993605295438052954454528564645285659052978947529791680.230000.000000.000001includedHepG2DDX55
MXENDUFS4ENSG00000164258.7chr5+52899281528993605294206252942235528565045285659052978947529791680.093000.000010.000091includedHepG2U2AF2
MXENDUFS4ENSG00000164258.7chr5+52942062529422355295438052954454528564645285659052978947529791680.081000.000000.000181includedHepG2SF3B4
MXENDUFS4ENSG00000164258.7chr5+5289928152899360529420625294223552856504528565905297894752979168-0.052000.000020.001742includedHepG2SF3B4
MXENDUFS4ENSG00000164258.7chr5+52942062529422355295438052954454528564645285659052978947529791680.088000.000910.077321includedHepG2PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFS4 is not avaliable on ENCORE database.