KCNMB3

General Information

Gene Name       : KCNMB3
Gene ID             : ENSG00000171121.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCNMB3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCNMB3ENSG00000171121.163.033.113.07ENCSR000AEF
HepG2KCNMB3ENSG00000171121.162.233.302.76ENCSR985KAT
K562KCNMB3ENSG00000171121.1612.7513.7413.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCNMB3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCNMB3 RNA is bound by 9 proteins.  







eCLIP assay for KCNMB3 is not avaliable on ENCORE database.





9 proteins are bound to KCNMB3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3178977623178977699-5'-UTR,intron-Distal,intron-Proximal5.242057.69727K562UCHL5
chr3178977060178977107-5'-UTR,intron-Distal,intron-Proximal3.203683.65452K562BUD13
chr3178977040178977110-5'-UTR,intron-Distal,intron-Proximal4.425287.52225K562UCHL5
chr3178977161178977213-5'-UTR,intron-Distal3.290554.00731K562UCHL5
chr3178976854178976929-5'-UTR,intron-Distal3.269814.48636K562SAFB2
chr3178976859178976925-5'-UTR,intron-Distal3.670818.44067K562UCHL5
chr3178968689178968738-CDS,intron-Distal,intron-Proximal4.936386.83215HepG2U2AF2
chr3178968529178968697-CDS,intron-Distal,intron-Proximal3.491314.65365HepG2GRWD1
chr3178978210178978237-intron-Distal3.320244.89070K562UCHL5
chr3178978796178978837-intron-Distal4.367284.82934K562RBM15
chr3178978313178978426-intron-Distal3.520454.68262K562RBM15
chr3178973530178973579-intron-Distal3.450405.35459K562KHSRP
chr3178978327178978419-intron-Distal3.917146.63248K562TRA2A
chr3178978060178978110-intron-Distal3.874305.08388K562UCHL5
chr3178978819178978880-intron-Distal4.790705.87202K562UCHL5
chr3178977701178977776-intron-Distal,intron-Proximal4.498894.62281K562TRA2A
chr3178978474178978556-intron-Distal3.891638.06634K562UCHL5
chr3178978210178978295-intron-Distal3.872703.01412K562SAFB2
chr3178965022178965099-intron-Distal4.106094.38266K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCNMB3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCNMB3 is not available on ENCORE database.

  • 75 RBPs can affect the levels of KCNMB3.  








The Knockdown/knockout RNA-Seq assay for KCNMB3 is not available on ENCORE database.





75 RBPs can affect the gene expression of KCNMB3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCNMB3ENSG00000171121.1275.72730294.77230-1.9607016.3089015.12750HepG2AKAP1
KCNMB3ENSG00000171121.12187.79830279.70150-0.574702.699101.67410HepG2AKAP8
KCNMB3ENSG00000171121.12218.28990139.462100.646303.481202.63220HepG2AKAP8L
KCNMB3ENSG00000171121.12239.52740141.813100.756104.007103.10220HepG2CALR
KCNMB3ENSG00000171121.12529.27660231.728001.1915012.7339011.20750HepG2CIRBP
KCNMB3ENSG00000171121.12162.8557090.288700.850903.696602.92150HepG2DDX21
KCNMB3ENSG00000171121.12155.1665088.506000.809902.510601.64320HepG2DDX24
KCNMB3ENSG00000171121.12159.34000242.52630-0.606002.364201.78970HepG2DDX6
KCNMB3ENSG00000171121.12182.8149099.615400.875804.428503.19990HepG2DHX30
KCNMB3ENSG00000171121.12204.96330132.790200.626102.967702.26830HepG2DKC1
KCNMB3ENSG00000171121.12181.02820103.273200.809604.215103.36260HepG2DNAJC21
KCNMB3ENSG00000171121.12440.25390233.201200.916707.134206.21430HepG2EIF2S1
KCNMB3ENSG00000171121.12236.61150161.158400.553902.638401.81780HepG2EIF4G1
KCNMB3ENSG00000171121.12235.54520154.382400.609402.732901.92350HepG2EIF4G2
KCNMB3ENSG00000171121.12289.86780201.907900.521602.759002.15890HepG2ETF1
KCNMB3ENSG00000171121.12206.41250135.644100.605602.741401.90970HepG2EWSR1
KCNMB3ENSG00000171121.12114.93940259.96990-1.177507.745706.63230HepG2FXR1
KCNMB3ENSG00000171121.12185.75780115.985300.679402.604901.92990HepG2HNRNPC
KCNMB3ENSG00000171121.12305.24200165.309400.884705.476004.62120HepG2HNRNPLL
KCNMB3ENSG00000171121.12366.30370232.404900.656303.172601.74560HepG2ILF3
KCNMB3ENSG00000171121.12142.15730261.52890-0.879504.447103.66490HepG2MATR3
KCNMB3ENSG00000171121.12158.93820267.69990-0.752203.744203.01160HepG2NCBP2
KCNMB3ENSG00000171121.12233.83460146.578300.673702.969702.19550HepG2NSUN2
KCNMB3ENSG00000171121.12419.36240217.871900.944604.662703.48850HepG2PABPC1
KCNMB3ENSG00000171121.12336.28920238.453000.495902.352601.68220HepG2PABPC4
KCNMB3ENSG00000171121.12141.75850220.77350-0.639102.658902.06140HepG2PCBP1
KCNMB3ENSG00000171121.12119.11220224.61550-0.915104.071403.43650HepG2PTBP1
KCNMB3ENSG00000171121.12216.02180154.634700.482201.825001.32740HepG2PUF60
KCNMB3ENSG00000171121.12171.17470243.32750-0.507401.898301.36570HepG2QKI
KCNMB3ENSG00000171121.12160.12690250.00020-0.642702.118301.63250HepG2NELFE
KCNMB3ENSG00000171121.12190.91120128.766300.568001.904201.32550HepG2RPLP0
KCNMB3ENSG00000171121.12306.37000107.895801.5055011.156009.38980HepG2RPS10
KCNMB3ENSG00000171121.12288.19810191.936100.586302.361001.73890HepG2SF3A3
KCNMB3ENSG00000171121.12337.99010163.623801.046508.011506.86820HepG2SF3B1
KCNMB3ENSG00000171121.12167.48590233.90710-0.481901.823501.32680HepG2SF3B4
KCNMB3ENSG00000171121.12105.52090244.12660-1.210105.766705.14610HepG2SRSF1
KCNMB3ENSG00000171121.12266.57870165.527800.687404.843504.20160HepG2SSB
KCNMB3ENSG00000171121.12176.5677076.342901.209604.772103.92020HepG2SUPV3L1
KCNMB3ENSG00000171121.12230.40070170.217300.436702.022801.40960HepG2UPF1
KCNMB3ENSG00000171121.12263.93350136.817500.947807.596906.57310HepG2ZC3H8
KCNMB3ENSG00000171121.12292.76110187.207300.645004.721304.05530HepG2ZNF622
KCNMB3ENSG00000171121.12302.44800212.797100.507102.556701.42760K562AARS
KCNMB3ENSG00000171121.12136.30840457.03600-1.7454027.4663025.78850K562AGGF1
KCNMB3ENSG00000171121.12301.82080502.18150-0.734506.558504.88220K562AKAP8
KCNMB3ENSG00000171121.12320.14860475.55880-0.570904.077203.28280K562AKAP8L
KCNMB3ENSG00000171121.12368.32260498.96080-0.438003.362602.34630K562ATP5C1
KCNMB3ENSG00000171121.12419.03760287.471400.543603.452902.01050K562CIRBP
KCNMB3ENSG00000171121.12623.55820465.947800.420303.756103.01320K562DDX47
KCNMB3ENSG00000171121.12289.34810511.78470-0.822709.624207.78770K562DKC1
KCNMB3ENSG00000171121.12284.14070182.284500.640303.326802.32120K562EFTUD2
KCNMB3ENSG00000171121.12612.40700340.523600.8466011.257809.95200K562EIF2S2
KCNMB3ENSG00000171121.12321.76670195.173700.721203.986002.71660K562EIF3D
KCNMB3ENSG00000171121.12289.23910146.946900.976907.149505.83680K562EIF4A3
KCNMB3ENSG00000171121.12301.11650158.176500.928703.752301.43730K562EIF4G1
KCNMB3ENSG00000171121.12268.97410366.48980-0.446302.366601.58260K562FIP1L1
KCNMB3ENSG00000171121.12315.82540202.062300.644203.521602.22990K562FKBP4
KCNMB3ENSG00000171121.12254.29390152.816900.734603.453902.78880K562FXR1
KCNMB3ENSG00000171121.12259.16340453.78910-0.808206.439505.27890K562GRSF1
KCNMB3ENSG00000171121.12454.76000232.971900.964809.302008.25840K562HNRNPC
KCNMB3ENSG00000171121.12340.05920504.71440-0.569703.760902.77870K562KIF1C
KCNMB3ENSG00000171121.12335.08220225.433900.571703.350301.78990K562LARP7
KCNMB3ENSG00000171121.12324.47500483.11350-0.574303.505902.24930K562MAK16
KCNMB3ENSG00000171121.12188.04140281.31550-0.581103.377502.34490K562MATR3
KCNMB3ENSG00000171121.12333.31710565.40370-0.762407.413305.78220K562MBNL1
KCNMB3ENSG00000171121.12262.39520396.30460-0.594902.833101.93840K562NAA15
KCNMB3ENSG00000171121.12109.39970347.02670-1.665409.361907.16320K562PABPN1
KCNMB3ENSG00000171121.12366.10380250.808200.545603.094202.06020K562PCBP2
KCNMB3ENSG00000171121.12356.00390235.180700.598003.427401.66380K562PKM
KCNMB3ENSG00000171121.12276.73740416.01900-0.588103.896102.89790K562PPIG
KCNMB3ENSG00000171121.12483.61730652.21330-0.431503.104202.08980K562PUM2
KCNMB3ENSG00000171121.12269.20460471.68020-0.809106.938906.12460K562PUS1
KCNMB3ENSG00000171121.12251.24750459.53460-0.871108.878107.84270K562RBM15
KCNMB3ENSG00000171121.12295.81660430.32390-0.540703.463301.65970K562RBM17
KCNMB3ENSG00000171121.12373.62260262.597800.508603.034102.14900K562RBM22
KCNMB3ENSG00000171121.12361.33300255.997800.497102.686001.33710K562RBM34
KCNMB3ENSG00000171121.12395.02170276.346800.515403.000201.85800K562NELFE
KCNMB3ENSG00000171121.12275.14210176.560700.639902.746201.74630K562RPS3
KCNMB3ENSG00000171121.1296.52040317.45330-1.717607.750105.39900K562SF1
KCNMB3ENSG00000171121.12182.71210387.14020-1.083304.630302.76400K562SFPQ
KCNMB3ENSG00000171121.12147.03430268.49700-0.868805.526604.53320K562SRSF1
KCNMB3ENSG00000171121.12289.30440171.748700.752204.032902.78950K562SUPV3L1
KCNMB3ENSG00000171121.12395.94280271.727700.543003.317602.54090K562TARDBP
KCNMB3ENSG00000171121.12350.12070207.221000.756605.257703.02100K562TBRG4
KCNMB3ENSG00000171121.12609.32730362.494900.749209.404508.17520K562UPF1
KCNMB3ENSG00000171121.12298.52950478.17760-0.679702.863101.54220K562UTP18
KCNMB3ENSG00000171121.12485.52860322.533400.590005.873104.68940K562WDR43
KCNMB3ENSG00000171121.12338.71620499.90120-0.561604.163302.57350K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCNMB3 is not available on ENCORE database.





9 RBPs can affect the splicing of KCNMB3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKCNMB3ENSG00000171121.12chr3-1789688231789689001789685301789687221789767351789769960.235000.000230.00986includedK562AKAP8L
SEKCNMB3ENSG00000171121.12chr3-1789691831789693651789685301789687221789767351789769960.196000.000600.00797includedK562AQR
SEKCNMB3ENSG00000171121.12chr3-178968823178968900178968530178968722178969183178969365-0.379000.008810.07337excludedK562AQR
SEKCNMB3ENSG00000171121.12chr3-1789691831789694091789685301789687221789767351789769960.443000.000040.00599includedK562SUPV3L1
SEKCNMB3ENSG00000171121.12chr3-1789691831789694091789685301789687221789767351789769960.279000.000260.00551includedK562PUS1
SEKCNMB3ENSG00000171121.12chr3-1789691831789693651789685301789687221789767351789769960.205000.000410.07120includedK562MTPAP
SEKCNMB3ENSG00000171121.12chr3-1789688231789689001789685301789687221789767351789769960.371000.000350.01198includedK562AGGF1
A5SSKCNMB3ENSG00000171121.12chr3-178968823178969403178969183178969403178968530178968722-0.532000.000150.02900shorterHepG2MATR3
RIKCNMB3ENSG00000171121.12chr3-178968530178969418178968530178968722178969183178969418-0.235000.017560.09100excludedK562PUS1
RIKCNMB3ENSG00000171121.12chr3-1789685301789694181789685301789687221789691831789694180.454000.000880.05919includedK562PHF6
RIKCNMB3ENSG00000171121.12chr3-178968530178969418178968530178968722178969183178969418-0.426000.007420.06383excludedK562EFTUD2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCNMB3 is not avaliable on ENCORE database.