GPANK1

General Information

Gene Name       : GPANK1
Gene ID             : ENSG00000204438.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GPANK1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GPANK1ENSG00000204438.1015.0820.7517.91ENCSR000AEF
HepG2GPANK1ENSG00000204438.1016.3518.4917.42ENCSR985KAT
K562GPANK1ENSG00000204438.1070.1074.8072.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GPANK1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GPANK1 RNA is bound by 9 proteins.  







eCLIP assay for GPANK1 is not avaliable on ENCORE database.





9 proteins are bound to GPANK1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63163230931632378-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.151553.19036K562XRN2
chr63163231531632365-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.113875.59833HepG2GRWD1
chr63163232831632367-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.579875.51215K562RBM15
chr63163358831633639-5'-UTR,intron-Distal,intron-Proximal4.492113.62536K562AQR
chr63163181931631903-CDS,intron-Distal,intron-Proximal4.994065.42508HepG2RBM15
chr63163182031631877-CDS,intron-Distal3.378335.65349K562UCHL5
chr63163169331631772-CDS,intron-Distal,intron-Proximal4.607297.34858HepG2RBM15
chr63163176031631820-CDS,intron-Distal,intron-Proximal3.936569.95299K562RBM15
chr63163182631631863-CDS,intron-Distal3.512843.61259K562ZNF622
chr63163170031631760-CDS,intron-Distal,intron-Proximal4.433587.03491K562RBM15
chr63163188131632064-CDS,intron-Distal,intron-Proximal3.5950814.37745K562UCHL5
chr63163167731631748-CDS,intron-Distal,intron-Proximal3.783953.86355HepG2PPIG
chr63163045231630534-CDS,intron-Distal3.7851811.83056K562SF3B4
chr63163180631631973-CDS,intron-Distal,intron-Proximal3.116616.69056K562GRWD1
chr63163043331630501-CDS,intron-Distal3.786897.74495HepG2U2AF2
chr63163169731631740-CDS,intron-Distal,intron-Proximal3.760343.34184HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GPANK1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GPANK1 is not available on ENCORE database.

  • 75 RBPs can affect the levels of GPANK1.  








The Knockdown/knockout RNA-Seq assay for GPANK1 is not available on ENCORE database.





75 RBPs can affect the gene expression of GPANK1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GPANK1ENSG00000204438.6464.27050327.257800.504403.113902.06130HepG2ADAR
GPANK1ENSG00000204438.6883.75350607.270800.541204.177403.22070HepG2ASCC1
GPANK1ENSG00000204438.6422.89340555.45380-0.393403.062602.34580HepG2AUH
GPANK1ENSG00000204438.6699.68700431.475800.697306.701105.81690HepG2BOP1
GPANK1ENSG00000204438.6268.91800449.59240-0.741506.340405.23460HepG2CALR
GPANK1ENSG00000204438.6496.21910289.117400.779204.222903.27220HepG2CNOT7
GPANK1ENSG00000204438.6385.09150703.02910-0.868408.283707.25130HepG2DDX3X
GPANK1ENSG00000204438.6573.44260445.863600.362902.679702.01210HepG2DKC1
GPANK1ENSG00000204438.6456.62190329.510900.470603.523602.73660HepG2DNAJC21
GPANK1ENSG00000204438.6662.82550518.343100.354602.468101.36610HepG2EIF2S2
GPANK1ENSG00000204438.6258.26520412.52350-0.675602.730001.37350HepG2HLTF
GPANK1ENSG00000204438.6363.00570519.18170-0.516204.512103.36830HepG2HNRNPA2B1
GPANK1ENSG00000204438.6462.43090608.31300-0.395602.292501.65250HepG2HNRNPK
GPANK1ENSG00000204438.6794.11480514.620700.625709.370408.20070HepG2HNRNPL
GPANK1ENSG00000204438.6352.56200476.05130-0.433202.592601.67070HepG2HNRNPM
GPANK1ENSG00000204438.6457.25080375.489200.284102.008801.37230HepG2ILF2
GPANK1ENSG00000204438.6398.12640275.606300.530502.655901.49260HepG2KHDRBS1
GPANK1ENSG00000204438.6548.09850425.974100.363603.041801.97590HepG2KIF1C
GPANK1ENSG00000204438.6514.67610684.00230-0.410302.060601.35250HepG2LARP4
GPANK1ENSG00000204438.6752.40530560.188500.425503.711802.82610HepG2NOL12
GPANK1ENSG00000204438.6537.10980379.968600.499203.216402.41230HepG2NSUN2
GPANK1ENSG00000204438.6447.06530593.52750-0.408802.254301.59730HepG2PABPC4
GPANK1ENSG00000204438.6409.76460599.10490-0.548005.617804.79980HepG2PCBP1
GPANK1ENSG00000204438.6479.86350327.867600.549404.751003.81090HepG2PPIL4
GPANK1ENSG00000204438.6536.16900432.665000.309302.156501.46610HepG2PRPF4
GPANK1ENSG00000204438.6145.63270268.39270-0.882005.028703.97340HepG2PRPF8
GPANK1ENSG00000204438.6380.02620534.74260-0.492703.461302.80460HepG2PUF60
GPANK1ENSG00000204438.6271.82010375.09660-0.464602.639402.03760HepG2RPS19
GPANK1ENSG00000204438.6497.92720327.355000.605006.229805.32270HepG2SAFB2
GPANK1ENSG00000204438.6217.88690424.17200-0.961108.131106.98020HepG2SF3B1
GPANK1ENSG00000204438.6421.64180634.67440-0.590006.039405.22280HepG2SF3B4
GPANK1ENSG00000204438.6794.99850471.963100.752204.766603.72860HepG2SNRNP70
GPANK1ENSG00000204438.6357.06220662.47240-0.8917012.5566011.70680HepG2SRSF1
GPANK1ENSG00000204438.6703.20300522.713900.427804.381403.76660HepG2SSB
GPANK1ENSG00000204438.6803.51660346.518401.2133012.3574011.09750HepG2SUPV3L1
GPANK1ENSG00000204438.6292.90060417.65460-0.511902.906002.16550HepG2TARDBP
GPANK1ENSG00000204438.6408.41010547.13910-0.421902.909202.05410HepG2TIA1
GPANK1ENSG00000204438.6445.67470357.130500.319401.766601.34830HepG2TIAL1
GPANK1ENSG00000204438.6444.35650590.21750-0.409502.282401.70680HepG2U2AF1
GPANK1ENSG00000204438.6507.72340341.110900.573702.734402.01310HepG2XRN2
GPANK1ENSG00000204438.6563.624701132.71620-1.0070015.4140014.18790K562AGGF1
GPANK1ENSG00000204438.6980.762501244.56640-0.343702.863901.86020K562AKAP8
GPANK1ENSG00000204438.6860.341201178.61370-0.454104.373603.54570K562AKAP8L
GPANK1ENSG00000204438.62253.590301613.991500.481505.141604.38460K562AQR
GPANK1ENSG00000204438.62057.044101723.720600.254902.710301.61480K562CPEB4
GPANK1ENSG00000204438.6617.03010931.84100-0.594705.274802.96000K562DDX51
GPANK1ENSG00000204438.61040.655701268.45400-0.285602.272901.48980K562DKC1
GPANK1ENSG00000204438.62028.655301504.727000.430905.417004.46010K562EIF2S2
GPANK1ENSG00000204438.6957.89650554.506600.788609.880808.31640K562EIF4A3
GPANK1ENSG00000204438.61913.705801369.791900.482305.207804.02010K562FIP1L1
GPANK1ENSG00000204438.6975.23940576.658500.7579012.1754010.99960K562FXR1
GPANK1ENSG00000204438.6189.29600355.34910-0.908605.758704.65520K562G3BP2
GPANK1ENSG00000204438.6973.226201284.37470-0.400203.016501.89280K562HNRNPA1
GPANK1ENSG00000204438.6715.377301266.89740-0.824504.083802.51280K562HNRNPA2B1
GPANK1ENSG00000204438.62000.201301612.037900.311202.827001.75640K562HNRNPL
GPANK1ENSG00000204438.62308.449301857.137700.313702.535201.77010K562HSPD1
GPANK1ENSG00000204438.6784.209501250.90500-0.673704.781203.64430K562KIF1C
GPANK1ENSG00000204438.61163.58170919.342000.339802.689301.32480K562LARP7
GPANK1ENSG00000204438.61288.85210963.032100.420303.331401.68850K562LIN28B
GPANK1ENSG00000204438.6920.29720649.236800.503302.662801.83890K562MAGOH
GPANK1ENSG00000204438.6824.078301197.34170-0.539003.243802.05430K562MAK16
GPANK1ENSG00000204438.61004.12160647.822900.632204.902803.63640K562MATR3
GPANK1ENSG00000204438.6595.87420982.21170-0.721005.734304.30060K562NAA15
GPANK1ENSG00000204438.6727.07990553.747900.392802.932401.66670K562NCBP2
GPANK1ENSG00000204438.6554.677201108.67130-0.999105.649704.09220K562PABPN1
GPANK1ENSG00000204438.62859.723301805.280800.663607.334005.97820K562PCBP3
GPANK1ENSG00000204438.62038.770501384.657900.558106.815805.56820K562POLR2G
GPANK1ENSG00000204438.62074.904801554.994300.416003.936702.93420K562PPIG
GPANK1ENSG00000204438.61079.67910851.597200.342302.616801.74200K562PSIP1
GPANK1ENSG00000204438.61101.69230630.821700.804305.640404.72170K562PTBP1
GPANK1ENSG00000204438.6539.869001169.06820-1.1147017.9898016.64050K562PUS1
GPANK1ENSG00000204438.6758.217401138.90940-0.587008.322707.32080K562RBM15
GPANK1ENSG00000204438.61069.92230604.535200.823505.939704.64900K562RBM22
GPANK1ENSG00000204438.6876.65370589.572500.572203.670201.99960K562RBM34
GPANK1ENSG00000204438.61036.72900636.257900.704303.989602.64260K562NELFE
GPANK1ENSG00000204438.61518.184401233.933200.299002.381701.38130K562SAFB
GPANK1ENSG00000204438.6573.793401014.19320-0.821703.318101.96730K562SF1
GPANK1ENSG00000204438.6576.026701164.29570-1.015205.313403.43360K562SNRNP200
GPANK1ENSG00000204438.6794.302401392.98320-0.810403.748401.98330K562SUPT6H
GPANK1ENSG00000204438.61152.43470812.438400.504303.033401.96720K562SUPV3L1
GPANK1ENSG00000204438.6973.79110625.795300.637804.876103.92290K562TARDBP
GPANK1ENSG00000204438.61146.882401439.27030-0.327602.834801.94740K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GPANK1 is not available on ENCORE database.





2 RBPs can affect the splicing of GPANK1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGPANK1ENSG00000204438.6chr6-316326173163278031631986316323543163363731634060-0.119000.001140.01895excludedK562PUS1
A3SSGPANK1ENSG00000204438.6chr6-316316293163235731631629316323543163261731632780-0.136000.000800.00569shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GPANK1 is not avaliable on ENCORE database.