GNPTG

General Information

Gene Name       : GNPTG
Gene ID             : ENSG00000090581.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GNPTG)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GNPTGENSG00000090581.91.605.393.50ENCSR000AEF
HepG2GNPTGENSG00000090581.933.109.3121.21ENCSR985KAT
K562GNPTGENSG00000090581.99.856.077.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GNPTG is not avaliable on ENCORE database.



Proteins bound to RNA
  • GNPTG RNA is bound by 23 proteins.  







eCLIP assay for GNPTG is not avaliable on ENCORE database.





23 proteins are bound to GNPTG RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1614120661412133+3'-UTR,CDS,intron-Proximal3.064366.71582HepG2PPIG
chr1614120381412129+3'-UTR,CDS,intron-Proximal4.805928.08487HepG2GRWD1
chr1614120381412136+3'-UTR,CDS,intron-Proximal4.000723.80990HepG2SRSF1
chr1614118251411877+3'-UTR,CDS,intron-Proximal5.607259.62108K562SF3B4
chr1614082651408329+3'-UTR,intron-Distal3.251948.23441HepG2CSTF2T
chr1614081401408238+3'-UTR,intron-Distal,intron-Proximal3.486856.36668HepG2CSTF2T
chr1614082681408350+3'-UTR,intron-Distal3.783013.93602K562EWSR1
chr1614019441402022+5'-UTR,CDS,intron-Proximal5.5458226.82297HepG2DDX3X
chr1614023001402367+CDS,intron-Proximal3.974714.93376K562PRPF8
chr1614123181412363+CDS,intron-Proximal4.601964.35676HepG2PRPF8
chr1614126481412738+CDS3.932479.27186HepG2PPIG
chr1614021011402135+CDS,intron-Proximal4.9520113.83562HepG2DDX3X
chr1614022931402352+CDS,intron-Proximal3.662808.16617HepG2PRPF8
chr1614057671405823+intron-Distal5.712897.93492K562GTF2F1
chr1614053831405554+intron-Distal4.5783013.32232K562FUS
chr1614061351406180+intron-Distal4.294098.41227K562EWSR1
chr1614080291408098+intron-Distal3.388674.25264K562NONO
chr1614053021405345+intron-Distal3.955193.07980HepG2HNRNPM
chr1614054471405510+intron-Distal4.068768.62307K562EWSR1
chr1614056061405651+intron-Distal3.498093.77567K562NONO
chr1614064981406561+intron-Distal4.8553315.84039HepG2CSTF2T
chr1614065041406569+intron-Distal4.125537.75823K562CSTF2T
chr1614057591405826+intron-Distal4.3986516.09093HepG2FAM120A
chr1614055821405655+intron-Distal3.817259.89654K562CSTF2T
chr1614069441407036+intron-Distal5.5961410.32927K562GTF2F1
chr1614069321407009+intron-Distal4.732967.23918HepG2PRPF4
chr1614072921407345+intron-Distal3.602484.70430K562CSTF2T
chr1614065001406562+intron-Distal4.081784.75179K562FUS
chr1614060141406086+intron-Distal4.5269410.59452HepG2PRPF4
chr1614078441407904+intron-Distal,intron-Proximal3.221463.84725K562NONO
chr1614060621406115+intron-Distal3.448024.41086K562DROSHA
chr1614054511405518+intron-Distal3.7021610.21741HepG2FAM120A
chr1614058781405918+intron-Distal3.760726.00449HepG2FAM120A
chr1614055961405657+intron-Distal4.4654716.84344HepG2CSTF2T
chr1614052741405366+intron-Distal4.106335.61877K562NONO
chr1614049351405003+intron-Distal3.183197.30591HepG2CSTF2T
chr1614069601407064+intron-Distal3.493143.23984HepG2HNRNPUL1
chr1614055831405654+intron-Distal5.6799510.44148K562EWSR1
chr1614053881405427+intron-Distal4.398084.71107K562CSTF2T
chr1614062481406289+intron-Distal4.150898.40143HepG2CSTF2T
chr1614054421405529+intron-Distal4.129914.46657HepG2FUS
chr1614069351407034+intron-Distal4.7354312.42402K562CSTF2T
chr1614101511410211+intron-Distal4.015433.76710K562NONO
chr1614060121406163+intron-Distal5.8875421.32863K562GTF2F1
chr1614069361407017+intron-Distal3.155985.66310K562SLTM
chr1614053051405356+intron-Distal3.986906.87384K562CSTF2T
chr1614053881405431+intron-Distal4.058413.07980HepG2HNRNPM
chr1614069431407018+intron-Distal3.962895.61877K562NONO
chr1614060131406055+intron-Distal5.330875.05215K562FASTKD2
chr1614069321407041+intron-Distal5.027576.42243HepG2GTF2F1
chr1614060151406089+intron-Distal5.136408.73676HepG2GTF2F1
chr1614071671407252+intron-Distal4.414348.10961K562EWSR1
chr1614065361406547+intron-Distal3.637515.27813K562EWSR1
chr1614057061405749+intron-Distal5.016307.92947HepG2CSTF2T
chr1614063841406428+intron-Distal3.014473.58178HepG2GTF2F1
chr1614069381407023+intron-Distal6.0076314.99722K562EWSR1
chr1614056011405669+intron-Distal4.270659.07337HepG2FAM120A
chr1614053041405352+intron-Distal5.5713811.06089K562EWSR1
chr1614057161405816+intron-Distal4.543766.93883K562FUS
chr1614057541405830+intron-Distal6.2085218.27324K562EWSR1
chr1614063731406435+intron-Distal3.9681113.54100HepG2CSTF2T
chr1614063591406454+intron-Distal5.0992711.13866K562FUS
chr1614060271406072+intron-Distal5.5887611.35375K562EWSR1
chr1614069241407017+intron-Distal3.4077312.03023HepG2FAM120A
chr1614054421405519+intron-Distal4.270049.58152K562CSTF2T
chr1614049691404987+intron-Distal3.582584.06602HepG2FAM120A
chr1614057681405802+intron-Distal4.422715.36494K562DROSHA
chr1614065311406608+intron-Distal4.8000512.61044HepG2FAM120A
chr1614063871406461+intron-Distal5.227048.33684K562NONO
chr1614061311406189+intron-Distal5.3351910.50820HepG2FAM120A
chr1614069411407031+intron-Distal3.371133.68882K562FAM120A
chr1614054461405526+intron-Distal3.5037811.66886HepG2CSTF2T
chr1614057751405809+intron-Distal3.143683.00463HepG2NKRF
chr1614060081406149+intron-Distal4.2618111.26531K562FUS
chr1614057731405828+intron-Distal3.859774.23488K562FAM120A
chr1614057591405827+intron-Distal5.3935021.65901HepG2CSTF2T
chr1614067281406777+intron-Distal3.580218.04077HepG2CSTF2T
chr1614060161406100+intron-Distal4.391385.59674K562AKAP8L
chr1614057761405821+intron-Distal4.694065.40320K562NONO
chr1614072951407351+intron-Distal3.040315.76705HepG2CSTF2T
chr1614057731405827+intron-Distal4.1091812.79165K562CSTF2T
chr1614057141405739+intron-Distal4.780776.58779K562EWSR1
chr1614063671406441+intron-Distal6.2002714.67044K562EWSR1
chr1614050731405136+intron-Distal3.814336.94888K562EWSR1
chr1614069441407076+intron-Distal5.000309.58049K562FUS
chr1614055991405643+intron-Distal3.615384.12529K562GTF2F1
chr1614060281406113+intron-Distal4.1919817.17647HepG2CSTF2T
chr1614060861406162+intron-Distal3.499847.28272HepG2PRPF4
chr1614063741406435+intron-Distal4.0278911.81908HepG2FAM120A
chr1614063801406448+intron-Distal4.6889013.66311K562CSTF2T
chr1614049471405016+intron-Distal3.497233.19512HepG2FKBP4
chr1614065611406613+intron-Distal5.5392412.86536HepG2CSTF2T
chr1614054581405522+intron-Distal4.772224.92659K562FAM120A
chr1614063711406431+intron-Distal3.254676.23791HepG2PRPF4
chr1614060361406110+intron-Distal4.1353812.80753K562CSTF2T
chr1614023191402419+intron-Distal,intron-Proximal4.6401511.24022HepG2EFTUD2
chr1614051771405233+intron-Distal5.047508.79830K562NONO
chr1614069321407019+intron-Distal3.6265412.79159HepG2CSTF2T
chr1614061241406188+intron-Distal4.3093013.84165HepG2CSTF2T
chr1614060351406131+intron-Distal3.5764310.73651HepG2FAM120A
chr1614063771406438+intron-Distal5.9435212.71535K562GTF2F1
chr1614023281402393+intron-Proximal3.590124.13746HepG2PPIG
chr1614123371412391+intron-Proximal4.496793.85055HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GNPTG is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GNPTG is not available on ENCORE database.

  • 87 RBPs can affect the levels of GNPTG.  








The Knockdown/knockout RNA-Seq assay for GNPTG is not available on ENCORE database.





87 RBPs can affect the gene expression of GNPTG :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GNPTGENSG00000090581.5824.80460590.924500.481002.501301.60430HepG2ABCF1
GNPTGENSG00000090581.5926.00520724.345600.354201.779201.34280HepG2AKAP1
GNPTGENSG00000090581.5479.88210300.748100.674002.234401.42650HepG2BCLAF1
GNPTGENSG00000090581.5889.91220388.404701.1960018.9097017.55270HepG2BOP1
GNPTGENSG00000090581.5687.36010576.894500.252701.945801.37520HepG2CKAP4
GNPTGENSG00000090581.5587.57140348.575500.753204.220603.27030HepG2CNOT7
GNPTGENSG00000090581.5837.02440499.840200.7437011.5533010.41560HepG2CELF1
GNPTGENSG00000090581.5707.95370537.423200.397504.220003.33500HepG2DAZAP1
GNPTGENSG00000090581.5387.99860277.447100.483703.032501.82500HepG2DDX1
GNPTGENSG00000090581.51151.97880693.769300.731505.900305.01890HepG2DDX3X
GNPTGENSG00000090581.5719.25600404.915700.828802.161801.30160HepG2DDX59
GNPTGENSG00000090581.5446.22310272.051600.713806.853705.78670HepG2DNAJC21
GNPTGENSG00000090581.5663.86790356.944900.895104.977203.77390HepG2EEF2
GNPTGENSG00000090581.5875.93470572.905700.612405.077704.28820HepG2EIF2S1
GNPTGENSG00000090581.5388.56710530.22490-0.448403.566602.63580HepG2EIF4G1
GNPTGENSG00000090581.5720.90850507.917200.505103.902402.94480HepG2EIF4G2
GNPTGENSG00000090581.51298.30940834.115000.6382011.2903010.20690HepG2ETF1
GNPTGENSG00000090581.5716.12330563.852000.344802.331401.56560HepG2EWSR1
GNPTGENSG00000090581.5463.51490259.035600.839408.258006.21170HepG2FAM120A
GNPTGENSG00000090581.5384.78060257.925200.577003.241202.26120HepG2GEMIN5
GNPTGENSG00000090581.5535.31690313.668900.771103.571502.40650HepG2GNB2L1
GNPTGENSG00000090581.5379.70700274.658000.467202.467401.85470HepG2HNRNPA1
GNPTGENSG00000090581.51228.57880600.488601.0327015.7335014.20670HepG2HNRNPK
GNPTGENSG00000090581.5551.58770385.728400.515903.195002.52480HepG2HNRNPLL
GNPTGENSG00000090581.5409.95450303.487900.433702.319301.75970HepG2HNRNPU
GNPTGENSG00000090581.5699.76760457.760400.612205.935704.91570HepG2IGF2BP1
GNPTGENSG00000090581.5460.25880310.002600.570105.670404.65270HepG2ILF2
GNPTGENSG00000090581.5688.95920527.470200.385203.947802.73220HepG2KIF1C
GNPTGENSG00000090581.51123.11150655.813000.776004.714003.62250HepG2LARP4
GNPTGENSG00000090581.51031.50460657.868800.648805.663204.77230HepG2NCBP2
GNPTGENSG00000090581.5756.26060532.909200.504903.108202.30100HepG2NOL12
GNPTGENSG00000090581.5306.80150183.544400.741103.331101.74540HepG2NOLC1
GNPTGENSG00000090581.5786.85020585.669500.425902.629401.92440HepG2PABPC4
GNPTGENSG00000090581.5422.88550300.399000.493303.704502.74010HepG2PARN
GNPTGENSG00000090581.5527.79640349.355100.595203.162302.05310HepG2PCBP2
GNPTGENSG00000090581.5336.15820239.586900.488502.678301.46830HepG2PKM
GNPTGENSG00000090581.5472.93340270.686700.804908.839807.56960HepG2PPIL4
GNPTGENSG00000090581.5421.26120262.373300.683002.705701.90600HepG2PRPF8
GNPTGENSG00000090581.5746.97040508.716200.554105.054504.27800HepG2PUF60
GNPTGENSG00000090581.5805.23100540.033700.576308.976508.03840HepG2PUM1
GNPTGENSG00000090581.5778.20190539.633600.528102.892002.20730HepG2PUM2
GNPTGENSG00000090581.5781.75920587.737000.411504.513703.76390HepG2PUS1
GNPTGENSG00000090581.5283.38950175.374800.692203.214401.37090HepG2RBM14
GNPTGENSG00000090581.5419.75410579.55870-0.465403.377702.63840HepG2RBM25
GNPTGENSG00000090581.5597.31810370.778000.687803.104202.05120HepG2RBM27
GNPTGENSG00000090581.5502.55210281.950300.833707.699906.73570HepG2RPS19
GNPTGENSG00000090581.5524.14350341.906800.616302.522801.75660HepG2RPS2
GNPTGENSG00000090581.5582.14350349.065200.737803.723302.46630HepG2RPS5
GNPTGENSG00000090581.5788.84370569.628800.469602.655901.99550HepG2SF3A3
GNPTGENSG00000090581.5279.91160381.78830-0.447802.197601.56370HepG2SF3B1
GNPTGENSG00000090581.5729.43980487.798000.580407.945206.84930HepG2SLBP
GNPTGENSG00000090581.5597.67520315.177000.9231014.9072013.59690HepG2SMN1
GNPTGENSG00000090581.5598.30940344.317700.797105.857504.42690HepG2SMNDC1
GNPTGENSG00000090581.5545.59180328.612900.731304.945502.76850HepG2SND1
GNPTGENSG00000090581.5346.33680640.76140-0.8876012.2934011.44870HepG2SRSF1
GNPTGENSG00000090581.5994.34080502.293900.9851022.0719020.53490HepG2SRSF5
GNPTGENSG00000090581.5618.97780456.719700.438503.894103.08880HepG2SRSF7
GNPTGENSG00000090581.5908.32690683.655300.409804.715504.08170HepG2SSB
GNPTGENSG00000090581.5737.96510571.237300.369403.679702.97990HepG2SUCLG1
GNPTGENSG00000090581.5549.73670402.642900.449102.721701.78730HepG2SUPT6H
GNPTGENSG00000090581.5535.74760338.846100.660802.046501.45190HepG2SUPV3L1
GNPTGENSG00000090581.5395.10860575.93170-0.543603.531302.91160HepG2TAF15
GNPTGENSG00000090581.5868.64450375.995801.2079018.3717016.79990HepG2TARDBP
GNPTGENSG00000090581.5757.80350294.889001.3616019.7466018.63380HepG2TIAL1
GNPTGENSG00000090581.5604.04510297.531801.0215010.942209.93130HepG2TRIM56
GNPTGENSG00000090581.5791.94280497.008800.672007.441905.89520HepG2TUFM
GNPTGENSG00000090581.5855.30970526.085700.701005.751704.51530HepG2UBE2L3
GNPTGENSG00000090581.5413.77720200.114501.047907.639206.37610HepG2UCHL5
GNPTGENSG00000090581.5459.40380313.902300.549302.303101.31120HepG2XPO5
GNPTGENSG00000090581.5220.11990370.74370-0.752104.008002.73440HepG2XRCC6
GNPTGENSG00000090581.5666.40620389.579000.7744011.7807010.55570HepG2ZC3H8
GNPTGENSG00000090581.5777.63470555.593800.485006.377905.63700HepG2ZNF622
GNPTGENSG00000090581.5423.11610275.549900.618605.071304.34190K562AGGF1
GNPTGENSG00000090581.5412.29770302.783000.445302.586901.64290K562AKAP8
GNPTGENSG00000090581.5430.96740286.721000.587803.589602.84190K562AKAP8L
GNPTGENSG00000090581.51147.19890461.619001.3132016.4211015.15030K562AQR
GNPTGENSG00000090581.5435.34630329.301000.402702.419801.33130K562CCDC124
GNPTGENSG00000090581.5325.72010182.794200.833305.415504.11240K562EFTUD2
GNPTGENSG00000090581.5646.29310507.914800.347502.171301.33420K562EIF4G2
GNPTGENSG00000090581.5286.85750182.998400.648403.663802.67810K562FIP1L1
GNPTGENSG00000090581.544.77290113.49320-1.341905.190504.15290K562G3BP2
GNPTGENSG00000090581.5129.61250213.78500-0.722003.416602.76380K562HNRNPC
GNPTGENSG00000090581.5309.59710176.622000.809605.195503.84240K562PCBP2
GNPTGENSG00000090581.5466.58940288.500500.693502.528401.73300K562PCBP3
GNPTGENSG00000090581.5364.44080221.292300.719605.128504.03640K562POLR2G
GNPTGENSG00000090581.5305.27690177.880100.779104.392303.44820K562PRPF8
GNPTGENSG00000090581.5589.82530284.356901.0525010.890709.86170K562PUS1
GNPTGENSG00000090581.5395.87970277.056000.514803.404902.75810K562RBM15
GNPTGENSG00000090581.5274.01310181.181600.596702.454101.68600K562RPS19
GNPTGENSG00000090581.5194.92720116.664900.740502.694201.70440K562RPS3
GNPTGENSG00000090581.5196.48760117.915600.736603.840002.82710K562SF3B4
GNPTGENSG00000090581.5289.63430191.348300.597903.186702.42770K562TARDBP
GNPTGENSG00000090581.5254.63780184.576200.464102.117901.40950K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GNPTG is not available on ENCORE database.





14 RBPs can affect the splicing of GNPTG :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGNPTGENSG00000090581.5chr16+1407700140783314022391402307141174314117980.067000.004730.07267includedHepG2U2AF1
SEGNPTGENSG00000090581.5chr16+1407700140783314022391402307141174314117980.703000.000000.00007includedK562XRCC6
SEGNPTGENSG00000090581.5chr16+141203814121321411872141195614122061412321-0.128000.000490.00670excludedK562AQR
SEGNPTGENSG00000090581.5chr16+1407700140783314022391402307141174314117980.658000.000000.00019includedK562HNRNPC
A5SSGNPTGENSG00000090581.5chr16+141191214121321411912141195614122061412535-0.196000.003040.04778shorterK562AQR
RIGNPTGENSG00000090581.5chr16+1412206141253514122061412321141247014125350.071000.000810.04950includedHepG2TBRG4
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.131000.000050.00046includedK562PUS1
RIGNPTGENSG00000090581.5chr16+1402102140230714021021402160140223914023070.157000.008220.04718includedK562PUS1
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.073000.000970.01327includedHepG2SF3A3
RIGNPTGENSG00000090581.5chr16+1402102140230714021021402160140223914023070.076000.014310.08132includedHepG2U2AF2
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.416000.000000.00000includedK562PRPF8
RIGNPTGENSG00000090581.5chr16+1412206141253514122061412321141245214125350.365000.000370.00640includedK562PRPF8
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.052000.000450.01890includedHepG2MATR3
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.102000.000000.00000includedHepG2U2AF1
RIGNPTGENSG00000090581.5chr16+1402102140230714021021402160140223914023070.164000.001320.01465includedHepG2U2AF1
RIGNPTGENSG00000090581.5chr16+1412206141253514122061412321141245214125350.119000.000000.00000includedHepG2U2AF1
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.091000.002190.02474includedK562RBM15
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.101000.000000.00000includedHepG2SF3B4
RIGNPTGENSG00000090581.5chr16+1402102140230714021021402160140223914023070.104000.004670.03328includedHepG2SF3B4
RIGNPTGENSG00000090581.5chr16+1412206141253514122061412321141245214125350.064000.000630.00632includedHepG2SF3B4
RIGNPTGENSG00000090581.5chr16+1402102140230714021021402160140223914023070.072000.011570.08611includedHepG2RBM22
RIGNPTGENSG00000090581.5chr16+1412206141253514122061412321141245214125350.089000.000000.00001includedHepG2RBM22
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.288000.000000.00005includedK562EFTUD2
RIGNPTGENSG00000090581.5chr16+1412206141253514122061412321141245214125350.265000.009420.07671includedK562EFTUD2
RIGNPTGENSG00000090581.5chr16+1412206141274314122061412535141261114127430.381000.000000.00000includedK562AQR
RIGNPTGENSG00000090581.5chr16+1411912141213214119121411956141203814121320.225000.000010.00010includedK562AQR
RIGNPTGENSG00000090581.5chr16+1412206141253514122061412321141245214125350.358000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GNPTG is not avaliable on ENCORE database.