FIGNL1

General Information

Gene Name       : FIGNL1
Gene ID             : ENSG00000132436.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FIGNL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FIGNL1ENSG00000132436.1126.2219.9223.07ENCSR000AEF
HepG2FIGNL1ENSG00000132436.117.0011.849.42ENCSR985KAT
K562FIGNL1ENSG00000132436.1120.5620.6820.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FIGNL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FIGNL1 RNA is bound by 3 proteins.  







eCLIP assay for FIGNL1 is not avaliable on ENCORE database.





3 proteins are bound to FIGNL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr75051494050515038-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.629716.26686K562SF3B4
chr75051595850516016-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.264276.75320K562AQR
chr75051323350513306-CDS,intron-Distal3.725085.03335K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FIGNL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FIGNL1 is not available on ENCORE database.

  • 94 RBPs can affect the levels of FIGNL1.  








The Knockdown/knockout RNA-Seq assay for FIGNL1 is not available on ENCORE database.





94 RBPs can affect the gene expression of FIGNL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FIGNL1ENSG00000132436.7227.38880334.71340-0.557803.891802.99410HepG2AKAP8L
FIGNL1ENSG00000132436.787.53700203.84790-1.219506.916405.70000HepG2ASCC1
FIGNL1ENSG00000132436.7301.03970463.99870-0.624205.496604.58560HepG2AUH
FIGNL1ENSG00000132436.7239.81430393.94520-0.716103.356202.32530HepG2BCCIP
FIGNL1ENSG00000132436.7188.67510342.35910-0.859604.736103.58790HepG2BCLAF1
FIGNL1ENSG00000132436.7181.62650578.65160-1.6717010.308909.24940HepG2BOP1
FIGNL1ENSG00000132436.7240.51780381.63830-0.666104.903003.91300HepG2CALR
FIGNL1ENSG00000132436.7138.99330333.07440-1.2608015.2377013.93930HepG2CKAP4
FIGNL1ENSG00000132436.7204.16200531.25840-1.379707.865906.75610HepG2CPSF6
FIGNL1ENSG00000132436.7328.66320437.72920-0.413402.828502.17970HepG2CELF1
FIGNL1ENSG00000132436.7228.30640308.11690-0.432502.757001.92450HepG2DDX19B
FIGNL1ENSG00000132436.7112.88710236.00020-1.063906.087505.19450HepG2DDX3X
FIGNL1ENSG00000132436.7230.07720387.30320-0.751303.659602.78390HepG2DDX55
FIGNL1ENSG00000132436.7294.83180603.27480-1.032904.271303.07090HepG2DDX59
FIGNL1ENSG00000132436.768.85500202.73200-1.557909.224408.16730HepG2DDX6
FIGNL1ENSG00000132436.7133.80310284.92100-1.090409.551108.30790HepG2DNAJC21
FIGNL1ENSG00000132436.7211.54400282.37830-0.416702.201501.60680HepG2DNAJC2
FIGNL1ENSG00000132436.7101.97300194.88830-0.934504.358903.62430HepG2EIF2S1
FIGNL1ENSG00000132436.7356.03510464.34700-0.383202.770101.93280HepG2EIF4G1
FIGNL1ENSG00000132436.7271.81370444.82180-0.710605.393404.27750HepG2EIF4G2
FIGNL1ENSG00000132436.7724.98950532.705100.444503.441702.78240HepG2ETF1
FIGNL1ENSG00000132436.7725.74170364.719300.992608.968407.68350HepG2FIP1L1
FIGNL1ENSG00000132436.7361.81110217.306600.735404.001303.17860HepG2FXR1
FIGNL1ENSG00000132436.7434.70490310.811400.483902.792901.76920HepG2GNB2L1
FIGNL1ENSG00000132436.7238.96020602.29050-1.333706.966005.98010HepG2GPKOW
FIGNL1ENSG00000132436.7185.31200366.99150-0.9858010.702709.41270HepG2HNRNPF
FIGNL1ENSG00000132436.7269.51770428.79670-0.669906.727505.72160HepG2HNRNPL
FIGNL1ENSG00000132436.7231.73630574.77080-1.310506.362405.45220HepG2HNRNPLL
FIGNL1ENSG00000132436.7382.38870251.684900.603304.125702.98430HepG2HNRNPM
FIGNL1ENSG00000132436.7197.17180361.37850-0.874107.609906.46420HepG2IGF2BP1
FIGNL1ENSG00000132436.791.59730204.90240-1.161606.478505.48570HepG2IGF2BP2
FIGNL1ENSG00000132436.7228.60650324.65870-0.506103.765502.92320HepG2ILF2
FIGNL1ENSG00000132436.7219.78010304.54030-0.470602.958401.90900HepG2KIF1C
FIGNL1ENSG00000132436.7376.67210545.98930-0.535602.046901.34160HepG2LARP4
FIGNL1ENSG00000132436.7265.78660509.59510-0.939104.311503.38300HepG2NSUN2
FIGNL1ENSG00000132436.7111.61310199.25880-0.836103.903803.05730HepG2PABPC4
FIGNL1ENSG00000132436.7212.88880322.88960-0.600902.647901.63200HepG2PCBP2
FIGNL1ENSG00000132436.7100.65750298.91840-1.5703011.144409.67600HepG2PRPF8
FIGNL1ENSG00000132436.7240.58930175.012600.459002.077901.59140HepG2PTBP1
FIGNL1ENSG00000132436.7219.19750445.54560-1.0233010.389909.33380HepG2PUF60
FIGNL1ENSG00000132436.7370.67280472.95140-0.351502.733002.14320HepG2PUM1
FIGNL1ENSG00000132436.7316.74950469.17400-0.566804.292803.25260HepG2RBM15
FIGNL1ENSG00000132436.7306.21310194.776100.652604.010103.38060HepG2NELFE
FIGNL1ENSG00000132436.7331.32920181.400400.869007.042406.12550HepG2RECQL
FIGNL1ENSG00000132436.7138.04090395.38970-1.5182017.4646016.03870HepG2RPLP0
FIGNL1ENSG00000132436.7156.70290306.04270-0.965704.410603.22490HepG2RPS10
FIGNL1ENSG00000132436.7129.94220205.04170-0.658002.952102.32100HepG2RPS19
FIGNL1ENSG00000132436.7135.22460295.70640-1.128806.633105.47320HepG2RRP9
FIGNL1ENSG00000132436.7180.91120283.05070-0.645804.382203.60440HepG2SAFB2
FIGNL1ENSG00000132436.7272.26680426.61650-0.647903.354702.61050HepG2SF3A3
FIGNL1ENSG00000132436.7231.40260568.94870-1.297907.101206.01590HepG2SF3B1
FIGNL1ENSG00000132436.7340.15890427.17810-0.328602.133701.50410HepG2SLBP
FIGNL1ENSG00000132436.7193.74280317.50640-0.712603.762002.63260HepG2SMNDC1
FIGNL1ENSG00000132436.7334.01810633.04120-0.922404.663703.63850HepG2SNRNP70
FIGNL1ENSG00000132436.7174.09950502.90210-1.5304025.5707024.44800HepG2SRFBP1
FIGNL1ENSG00000132436.7481.84730190.193901.3410018.7488017.74620HepG2SRSF1
FIGNL1ENSG00000132436.7161.81580360.56850-1.1559013.4800012.14580HepG2SRSF7
FIGNL1ENSG00000132436.7320.03860436.65570-0.448303.210102.66700HepG2SSB
FIGNL1ENSG00000132436.7166.01720246.33620-0.569302.548201.64470HepG2SUPT6H
FIGNL1ENSG00000132436.7121.31150385.59650-1.6684013.1136011.82200HepG2SUPV3L1
FIGNL1ENSG00000132436.7259.36710560.04390-1.110506.201305.17690HepG2TARDBP
FIGNL1ENSG00000132436.7128.11530258.47750-1.012605.195403.89300HepG2TFIP11
FIGNL1ENSG00000132436.798.11120308.86860-1.6545018.6458017.55960HepG2TIAL1
FIGNL1ENSG00000132436.7190.85980311.59400-0.707205.601104.85080HepG2TRIM56
FIGNL1ENSG00000132436.7130.22060227.81250-0.806903.883102.98500HepG2UCHL5
FIGNL1ENSG00000132436.7180.73260378.34360-1.0658012.2383010.96150HepG2UPF1
FIGNL1ENSG00000132436.7296.49760388.88440-0.391302.351401.37420HepG2UTP18
FIGNL1ENSG00000132436.7219.07370365.27590-0.737606.094205.26400HepG2UTP3
FIGNL1ENSG00000132436.7203.07110379.57620-0.902405.381004.38020HepG2XRN2
FIGNL1ENSG00000132436.7122.13710416.10560-1.7684031.4369030.10740HepG2ZNF622
FIGNL1ENSG00000132436.71247.922201500.17630-0.265602.471701.61160K562ATP5C1
FIGNL1ENSG00000132436.7920.206701337.23500-0.539206.570705.35780K562CPSF6
FIGNL1ENSG00000132436.7698.97110916.02830-0.390202.808901.75930K562DDX3X
FIGNL1ENSG00000132436.71489.406701804.73770-0.277103.283902.58380K562DDX47
FIGNL1ENSG00000132436.71183.485101538.58390-0.378604.747403.55020K562DKC1
FIGNL1ENSG00000132436.7577.78030855.97790-0.567104.110202.98030K562EFTUD2
FIGNL1ENSG00000132436.7742.94890955.43970-0.362903.212702.35740K562EIF3G
FIGNL1ENSG00000132436.7628.01280957.06970-0.607804.834603.74690K562EIF4A3
FIGNL1ENSG00000132436.72418.882102045.080000.242102.796501.85420K562EIF4G2
FIGNL1ENSG00000132436.71482.031401113.041900.413002.471801.80970K562G3BP2
FIGNL1ENSG00000132436.7864.049901276.73530-0.563306.313605.11700K562GPKOW
FIGNL1ENSG00000132436.71149.972001647.32090-0.518503.585502.72950K562GRSF1
FIGNL1ENSG00000132436.71245.173401631.03470-0.389403.873302.59510K562HNRNPL
FIGNL1ENSG00000132436.71274.704501828.31270-0.520305.749404.61720K562HSPD1
FIGNL1ENSG00000132436.7929.009201225.96020-0.400103.510502.12970K562IGF2BP3
FIGNL1ENSG00000132436.7660.18800482.804600.451302.819301.30870K562ILF3
FIGNL1ENSG00000132436.7819.200201090.15960-0.412302.226401.39860K562KRR1
FIGNL1ENSG00000132436.7822.529801266.88710-0.623107.935406.48290K562MAGOH
FIGNL1ENSG00000132436.7900.596801246.23400-0.468604.669203.51070K562METAP2
FIGNL1ENSG00000132436.71129.086001321.57570-0.227102.600701.87410K562NSUN2
FIGNL1ENSG00000132436.7832.145101127.26500-0.437903.860002.70070K562PCBP2
FIGNL1ENSG00000132436.71050.810801530.68870-0.542705.824804.56100K562PPIG
FIGNL1ENSG00000132436.7996.895401230.84000-0.304102.511201.87440K562PTBP1
FIGNL1ENSG00000132436.71617.150302231.35020-0.464504.976503.88550K562PUF60
FIGNL1ENSG00000132436.71840.480801417.992400.376103.285702.70160K562PUS1
FIGNL1ENSG00000132436.7897.254601180.37590-0.395703.285902.36410K562RBM22
FIGNL1ENSG00000132436.7548.99720763.93080-0.476602.703801.72340K562RCC2
FIGNL1ENSG00000132436.7569.86490848.59570-0.574503.931102.95350K562RPS19
FIGNL1ENSG00000132436.7670.26880966.26680-0.527703.850602.64530K562RPS3
FIGNL1ENSG00000132436.7675.860301121.93000-0.731202.606501.45540K562SF1
FIGNL1ENSG00000132436.7989.627401303.93660-0.397904.719203.67740K562SF3A3
FIGNL1ENSG00000132436.7627.809301157.60140-0.8827015.9362013.74110K562SF3B4
FIGNL1ENSG00000132436.71565.548801335.900300.228802.516001.61760K562SRPK2
FIGNL1ENSG00000132436.7587.57100932.93800-0.667007.482505.61980K562SRSF4
FIGNL1ENSG00000132436.7590.42330806.72120-0.450302.667601.66950K562SUPV3L1
FIGNL1ENSG00000132436.7919.003601221.22640-0.410203.300802.52640K562TARDBP
FIGNL1ENSG00000132436.7892.641701177.99370-0.400203.849502.86150K562TIA1
FIGNL1ENSG00000132436.7572.85990805.69230-0.492002.543901.64930K562TIAL1
FIGNL1ENSG00000132436.71087.999701401.28830-0.365105.092804.14890K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FIGNL1 is not available on ENCORE database.





6 RBPs can affect the splicing of FIGNL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFIGNL1ENSG00000132436.7chr7-505158785051598750511830505149955051799850518066-0.445000.003040.05048excludedK562SF3B4
SEFIGNL1ENSG00000132436.7chr7-505156655051575350514880505149955051587850516026-0.193000.001640.04635excludedK562AKAP8L
SEFIGNL1ENSG00000132436.7chr7-5051566550515753505148805051499550515878505159870.088000.000220.02869includedHepG2DDX59
SEFIGNL1ENSG00000132436.7chr7-505168155051742150515878505159875051799850518088-0.263000.006440.09823excludedK562U2AF1
SEFIGNL1ENSG00000132436.7chr7-505156655051575350514880505149955051587850516026-0.208000.000860.02450excludedK562AGGF1
SEFIGNL1ENSG00000132436.7chr7-505156655051575350514880505149955051587850515987-0.288000.000000.00015excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FIGNL1 is not avaliable on ENCORE database.