FAM193A

General Information

Gene Name       : FAM193A
Gene ID             : ENSG00000125386.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM193A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM193AENSG00000125386.155.348.416.88ENCSR000AEF
HepG2FAM193AENSG00000125386.159.917.238.57ENCSR985KAT
K562FAM193AENSG00000125386.1511.7210.2610.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM193A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM193A RNA is bound by 28 proteins.  







eCLIP assay for FAM193A is not avaliable on ENCORE database.





28 proteins are bound to FAM193A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr427015122701566+3'-UTR,CDS5.506209.46752K562ZNF622
chr427015142701583+3'-UTR,CDS3.152026.95218K562UCHL5
chr426983192698364+3'-UTR,CDS,intron-Proximal3.831154.89208K562AQR
chr427334262733530+3'-UTR,CDS,intron-Proximal3.393667.49660K562SF3B4
chr426982322698292+3'-UTR,CDS3.003164.59059K562ZNF622
chr427016092701664+3'-UTR,CDS4.185044.23295HepG2GRWD1
chr427018742701952+3'-UTR,CDS3.316999.04720K562ZNF622
chr427021222702189+3'-UTR,CDS3.339167.85158K562UCHL5
chr427335772733626+3'-UTR,CDS4.433925.17013K562RBM15
chr427018782701946+3'-UTR,CDS4.599386.56507HepG2GRWD1
chr427177632717826+3'-UTR,CDS3.124316.06438HepG2BCLAF1
chr426327262632775+3'-UTR,5'-UTR,CDS3.737997.40563HepG2PPIG
chr427178132717934+3'-UTR,CDS,intron-Distal,intron-Proximal4.388896.99120K562AQR
chr426567392656840+5'-UTR,CDS,intron-Distal,intron-Proximal3.6499313.82678HepG2U2AF2
chr426270822627167+5'-UTR,intron-Proximal4.819503.70131HepG2PRPF8
chr426282622628303+5'-UTR3.238704.06531HepG2GRWD1
chr426567432656859+5'-UTR,CDS,intron-Distal,intron-Proximal3.321125.24853K562U2AF2
chr426282372628305+5'-UTR,intron-Proximal3.6736810.93644HepG2PPIG
chr426615402661597+CDS3.395855.62662K562BUD13
chr426613232661396+CDS3.943969.17402K562UCHL5
chr426955432695596+CDS4.136603.70840HepG2EIF3D
chr426485442648611+CDS,intron-Proximal3.4115513.00299HepG2PRPF8
chr426649362665013+CDS4.803589.47159HepG2BCLAF1
chr426648912665016+CDS,intron-Proximal4.902256.67793HepG2ZNF800
chr426955702695644+CDS,intron-Proximal3.358954.22621HepG2PRPF8
chr426612842661363+CDS,intron-Proximal3.689489.86075K562DDX24
chr426646782664713+CDS3.397185.65306K562ZNF622
chr426617072661774+CDS4.144587.51551K562UCHL5
chr426646992664820+CDS,intron-Proximal3.855033.42844K562KHSRP
chr426484562648557+CDS5.103899.08247HepG2SRSF1
chr426595782659607+CDS3.531735.14149K562DDX24
chr426926162692656+CDS3.146855.79072K562YBX3
chr426966502696708+CDS,intron-Proximal5.388896.22530K562AQR
chr426966182696675+CDS,intron-Proximal3.765394.76523HepG2SF3B4
chr426617082661769+CDS4.256573.80193HepG2GRWD1
chr426926932692744+CDS,intron-Proximal3.088364.78164HepG2PRPF8
chr426952842695334+CDS,intron-Proximal4.587755.58015HepG2AQR
chr426484752648557+CDS3.438426.24463HepG2GRWD1
chr426617422661771+CDS3.594593.95301K562ZNF622
chr426649292664990+CDS4.0277213.51026K562ZNF622
chr426648662664929+CDS3.2564212.01864K562ZNF622
chr426649432664996+CDS4.739255.79396K562DDX24
chr426648862664993+CDS3.525147.36807K562UCHL5
chr426613332661394+CDS4.3397110.03600HepG2GRWD1
chr426613292661387+CDS3.945387.65975HepG2BCLAF1
chr426855812685692+intron-Distal4.394736.98272HepG2MATR3
chr427236622723750+intron-Distal3.886483.48210HepG2HNRNPL
chr426840702684141+intron-Distal3.258803.59523HepG2SUGP2
chr426449952645105+intron-Distal3.779626.08725HepG2HNRNPL
chr426671952667285+intron-Distal4.444534.07628HepG2PTBP1
chr427029762703065+intron-Distal3.278593.59771HepG2QKI
chr426846672684739+intron-Distal3.806293.06015K562MATR3
chr427178702717960+intron-Distal,intron-Proximal3.320204.98422K562PRPF8
chr426774272677577+intron-Distal3.077194.54788HepG2SUGP2
chr426680092668061+intron-Distal4.164773.59917K562EXOSC5
chr426501732650264+intron-Distal3.887917.09030K562SF3B4
chr426571542657221+intron-Distal3.175193.07368K562TARDBP
chr426894092689476+intron-Distal4.076523.80778HepG2QKI
chr426679742668048+intron-Distal4.277113.97018HepG2HNRNPM
chr426589602659026+intron-Distal4.770094.20763HepG2U2AF2
chr427022772702377+intron-Distal,intron-Proximal3.419623.88924K562PRPF8
chr426672522667303+intron-Distal3.088733.35050HepG2SUGP2
chr426689252669009+intron-Distal4.325705.04879HepG2SUGP2
chr427259742726077+intron-Distal4.422344.07628HepG2PTBP1
chr426539312653999+intron-Distal4.482415.16513HepG2HNRNPM
chr426848752684992+intron-Distal3.346063.71597K562MATR3
chr426500862650167+intron-Distal4.249614.28571K562HNRNPM
chr426416142641730+intron-Distal,intron-Proximal4.117453.60944K562TARDBP
chr426593482659428+intron-Distal4.499056.34785K562KHSRP
chr427238002723851+intron-Distal4.160883.83958HepG2QKI
chr426768832676961+intron-Distal4.519833.97018HepG2HNRNPM
chr426856032685669+intron-Distal4.678855.90588K562MATR3
chr426632312663300+intron-Distal3.184903.11000HepG2HNRNPM
chr426522692652376+intron-Distal4.193383.25012HepG2FKBP4
chr426521882652342+intron-Distal8.0759156.35144K562AKAP8L
chr426549392655081+intron-Distal3.352056.67026K562KHSRP
chr426778412677887+intron-Distal4.991545.42395HepG2HNRNPM
chr426856012685693+intron-Distal4.669354.90095K562PTBP1
chr426467632646840+intron-Distal3.197943.69826K562TARDBP
chr426410522641190+intron-Distal3.132514.10408K562KHSRP
chr426736622673722+intron-Distal3.977533.54208HepG2SUGP2
chr426594292659496+intron-Distal,intron-Proximal4.805268.24653K562KHSRP
chr426862892686319+intron-Distal4.432765.59955HepG2SUGP2
chr426857222685780+intron-Distal5.071999.10501K562MATR3
chr427237462723800+intron-Distal3.189524.70908HepG2QKI
chr426927112692796+intron-Proximal3.223463.20886K562PRPF8
chr426329262632973+intron-Proximal4.658404.40230HepG2RBM22
chr426956012695606+intron-Proximal5.577077.28294K562AQR
chr426414032641454+intron-Proximal5.069205.40008K562SF3B4
chr426956062695650+intron-Proximal5.955119.41643K562AQR
chr426485592648604+intron-Proximal5.591629.41643K562AQR
chr426926972692770+intron-Proximal5.467667.81430K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM193A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM193A is not available on ENCORE database.

  • 80 RBPs can affect the levels of FAM193A.  








The Knockdown/knockout RNA-Seq assay for FAM193A is not available on ENCORE database.





80 RBPs can affect the gene expression of FAM193A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM193AENSG00000125386.10845.99730687.669900.298802.483501.90230HepG2ACO1
FAM193AENSG00000125386.10887.49370690.765700.361403.564902.70670HepG2AKAP8L
FAM193AENSG00000125386.10635.26570506.693700.326101.873101.30340HepG2DDX21
FAM193AENSG00000125386.10789.23030572.175500.463903.008302.04780HepG2EEF2
FAM193AENSG00000125386.10740.28360529.850400.482403.128202.49900HepG2EIF2S1
FAM193AENSG00000125386.101055.73370828.379600.349802.854001.66470HepG2EIF2S2
FAM193AENSG00000125386.10615.41900464.443100.406002.229601.40960HepG2EIF3D
FAM193AENSG00000125386.10878.22210585.478900.584904.289103.49750HepG2EIF4A3
FAM193AENSG00000125386.101080.14090570.175800.921608.087206.94170HepG2EIF4B
FAM193AENSG00000125386.101303.341401073.829000.279402.695702.10100HepG2ETF1
FAM193AENSG00000125386.10648.93890498.036400.381702.258201.54170HepG2FUBP3
FAM193AENSG00000125386.10770.02510590.929600.381802.181901.56390HepG2FXR1
FAM193AENSG00000125386.10758.66640548.065500.469002.972302.28410HepG2G3BP1
FAM193AENSG00000125386.10750.52310581.983400.366802.115401.34300HepG2G3BP2
FAM193AENSG00000125386.101275.18750541.310701.2361023.4612021.66880HepG2HNRNPC
FAM193AENSG00000125386.101078.20340760.791100.503005.322004.04900HepG2HNRNPM
FAM193AENSG00000125386.10440.16010537.73250-0.288901.983501.46070HepG2HNRNPU
FAM193AENSG00000125386.10723.78500557.058100.377602.113101.51400HepG2IGF2BP2
FAM193AENSG00000125386.10836.75250522.930200.678102.327001.43250HepG2IGF2BP3
FAM193AENSG00000125386.10850.08940560.377300.601103.847802.64550HepG2KHSRP
FAM193AENSG00000125386.10912.50870591.136800.626205.286204.38580HepG2MAGOH
FAM193AENSG00000125386.10843.19130608.386400.470803.071402.40590HepG2NCBP2
FAM193AENSG00000125386.10729.12290541.682600.428602.615301.91130HepG2PABPC4
FAM193AENSG00000125386.10693.27900514.122900.431204.096103.38470HepG2PCBP1
FAM193AENSG00000125386.10563.62370384.089400.553204.691803.10510HepG2PKM
FAM193AENSG00000125386.10739.93170523.130000.500105.099604.40400HepG2PTBP1
FAM193AENSG00000125386.10949.96220764.533300.313202.700102.11260HepG2PUM1
FAM193AENSG00000125386.101035.97290763.927900.439402.454401.82320HepG2PUM2
FAM193AENSG00000125386.10838.61540700.412600.259701.912101.38060HepG2PUS1
FAM193AENSG00000125386.10851.41200566.582400.587506.517605.61650HepG2QKI
FAM193AENSG00000125386.10826.89870539.960600.614802.989602.25900HepG2RAVER1
FAM193AENSG00000125386.101018.526901282.70440-0.332703.306502.37880HepG2RBM15
FAM193AENSG00000125386.10844.46720514.202500.715608.348407.22610HepG2RBM25
FAM193AENSG00000125386.10802.15190582.201100.462304.640703.97350HepG2NELFE
FAM193AENSG00000125386.10705.41640542.227300.379503.196402.54010HepG2RECQL
FAM193AENSG00000125386.10788.95220451.960400.803609.682908.61800HepG2RPS19
FAM193AENSG00000125386.10578.16190478.879400.271701.879201.33120HepG2SAFB2
FAM193AENSG00000125386.102011.759901224.290000.716404.097003.26880HepG2SF3A3
FAM193AENSG00000125386.10897.01440544.662400.7197010.918509.86330HepG2SF3B4
FAM193AENSG00000125386.10855.46640690.654700.308602.471601.80290HepG2SLBP
FAM193AENSG00000125386.10697.99880558.462400.321702.976402.31260HepG2SMN1
FAM193AENSG00000125386.10729.77710568.502900.360202.980102.49410HepG2SRSF1
FAM193AENSG00000125386.10979.07970711.121500.461205.389204.55720HepG2SRSF5
FAM193AENSG00000125386.10737.22730486.206800.600404.064402.70980HepG2STIP1
FAM193AENSG00000125386.10646.92610469.535200.462303.775102.80560HepG2TIA1
FAM193AENSG00000125386.10735.48570522.538200.493104.729904.11180HepG2TIAL1
FAM193AENSG00000125386.10653.72730527.176500.310302.484501.94380HepG2TRIM56
FAM193AENSG00000125386.10980.41820703.667300.478405.165803.93130HepG2TUFM
FAM193AENSG00000125386.101212.08120943.248300.361702.511701.91140HepG2U2AF1
FAM193AENSG00000125386.101297.501801048.256600.307603.654302.98230HepG2UTP3
FAM193AENSG00000125386.101585.255701056.573400.585206.545605.70550K562AQR
FAM193AENSG00000125386.101373.765201050.984800.386302.933502.03700K562BOP1
FAM193AENSG00000125386.10854.36520568.146000.588505.624103.98400K562CCAR1
FAM193AENSG00000125386.102111.472201462.288400.529902.760901.70170K562CNOT7
FAM193AENSG00000125386.102130.664501747.606200.285802.764701.79110K562CELF1
FAM193AENSG00000125386.101480.522601202.508500.300003.038001.76860K562DDX21
FAM193AENSG00000125386.102609.287101540.890500.7598022.8232021.13830K562DDX47
FAM193AENSG00000125386.10860.52750636.069200.435903.150701.72450K562DHX30
FAM193AENSG00000125386.101322.93040577.890401.1948011.306609.26650K562EIF3A
FAM193AENSG00000125386.10953.07020672.475300.503003.161402.04950K562EIF3D
FAM193AENSG00000125386.10769.26710459.681300.7428010.238708.70160K562EIF3G
FAM193AENSG00000125386.10841.33820667.235900.334402.336001.58010K562EIF4A3
FAM193AENSG00000125386.101875.718701421.324100.400105.430304.13340K562EIF4G2
FAM193AENSG00000125386.10834.95420620.268100.428702.795001.66320K562FKBP4
FAM193AENSG00000125386.10888.17740693.900000.356002.967602.34410K562FXR1
FAM193AENSG00000125386.101345.166301090.320200.302902.889001.72440K562GLRX3
FAM193AENSG00000125386.10910.386101237.09390-0.442404.218803.28810K562GRSF1
FAM193AENSG00000125386.10971.30540784.442800.308202.329601.34990K562HNRNPA1
FAM193AENSG00000125386.101886.92000714.158901.4016038.4044036.25950K562HNRNPC
FAM193AENSG00000125386.10859.24110637.815600.429803.408702.13340K562HNRNPF
FAM193AENSG00000125386.101088.042101577.76410-0.536105.659304.53630K562HSPD1
FAM193AENSG00000125386.10782.02370578.430700.435002.481901.52740K562IGF2BP2
FAM193AENSG00000125386.101255.24400911.066300.462202.880301.92340K562KRR1
FAM193AENSG00000125386.101328.999501041.365800.351803.007702.09270K562METAP2
FAM193AENSG00000125386.101571.217001273.729300.302704.529003.60270K562NSUN2
FAM193AENSG00000125386.10943.397901321.02400-0.485704.535303.44790K562PPIG
FAM193AENSG00000125386.10777.60340590.518800.397003.251802.53770K562PTBP1
FAM193AENSG00000125386.101875.516901550.774200.274202.403901.64520K562PUF60
FAM193AENSG00000125386.10752.43720566.175000.410202.984302.10850K562RBM22
FAM193AENSG00000125386.101306.301901014.768900.364202.262201.39310K562SF3B1
FAM193AENSG00000125386.10573.71710449.981400.350402.295301.51900K562SF3B4
FAM193AENSG00000125386.101590.564301287.553400.304804.110802.99290K562SRPK2
FAM193AENSG00000125386.101050.58070766.534500.454704.091602.77530K562SRSF4
FAM193AENSG00000125386.10789.95530591.702400.416802.395601.45420K562SUPV3L1
FAM193AENSG00000125386.10803.38400585.875400.455403.388102.60250K562TARDBP
FAM193AENSG00000125386.10739.86630565.150200.388502.939102.09260K562TIA1
FAM193AENSG00000125386.101410.404701155.637600.287302.283801.48740K562WDR3
FAM193AENSG00000125386.101640.720301201.668900.449208.237606.85040K562WDR43
FAM193AENSG00000125386.101576.021501190.126200.405103.928002.86770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM193A is not available on ENCORE database.





7 RBPs can affect the splicing of FAM193A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM193AENSG00000125386.10chr4+265675426568562648411264855926595292659607-0.133000.000040.00115excludedHepG2U2AF1
SEFAM193AENSG00000125386.10chr4+2650228265045126484112648559265952926596070.072000.000670.02302includedK562AKAP8L
SEFAM193AENSG00000125386.10chr4+269123226914312673847267409926924242692697-0.103000.010810.08639excludedK562AQR
SEFAM193AENSG00000125386.10chr4+2656754265685626484112648559265952926596070.221000.000550.02911includedHepG2SFPQ
SEFAM193AENSG00000125386.10chr4+2656754265685626484112648559265952926596070.294000.000060.01682includedHepG2HNRNPUL1
SEFAM193AENSG00000125386.10chr4+2709872270999527014062702271271774927178310.160000.000630.01924includedK562AGGF1
SEFAM193AENSG00000125386.10chr4+2656754265685626484112648559265952926596070.353000.000440.02023includedHepG2HNRNPC
SEFAM193AENSG00000125386.10chr4+2656754265685626484112648559265952926596070.413000.000000.00000includedK562HNRNPC
A3SSFAM193AENSG00000125386.10chr4+2691215269143126912322691431267384726740990.152000.000050.00047longerK562AQR
A3SSFAM193AENSG00000125386.10chr4+2664542266471826645642664718266153826617810.110000.006600.03686longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM193A is not avaliable on ENCORE database.