ERI3

General Information

Gene Name : ERI3
Gene ID : ENSG00000117419.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ERI3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ERI3	ENSG00000117419.15	13.70	21.43	17.56	ENCSR000AEF
HepG2	ERI3	ENSG00000117419.15	29.00	21.96	25.48	ENCSR985KAT
K562	ERI3	ENSG00000117419.15	62.87	49.01	55.94	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ERI3 is not avaliable on ENCORE database.

Proteins bound to RNA

ERI3 RNA is bound by 35 proteins.

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eCLIP assay for ERI3 is not avaliable on ENCORE database.

35 proteins are bound to ERI3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	44820462	44820539	-	intron-Distal	6.54376	23.15008	HepG2	RBFOX2
chr1	44820454	44820531	-	intron-Distal	5.01423	22.53814	K562	RBFOX2
chr1	44747456	44747558	-	intron-Distal	5.64068	14.16307	HepG2	HNRNPL
chr1	44820296	44820416	-	intron-Distal	3.98987	13.97852	K562	RBFOX2
chr1	44747423	44747527	-	intron-Distal	4.53693	13.31941	K562	HNRNPL
chr1	44747586	44747690	-	intron-Distal	3.36959	12.77052	K562	AGGF1
chr1	44785296	44785341	-	CDS,intron-Distal,intron-Proximal	4.17343	12.74514	K562	PUM2
chr1	44712714	44712845	-	intron-Distal	4.54644	12.14339	K562	TARDBP
chr1	44811741	44811806	-	intron-Distal	5.59995	11.99536	K562	EXOSC5
chr1	44820531	44820589	-	CDS,intron-Distal	5.40728	11.74926	K562	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 114 entries

eCLIP assay for ERI3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ERI3 is not available on ENCORE database.
67 RBPs can affect the levels of ERI3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ERI3 is not available on ENCORE database.

67 RBPs can affect the gene expression of ERI3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ERI3	ENSG00000117419.10	1588.31250	996.99270	0.67170	14.74530	13.54250	K562	AGGF1
ERI3	ENSG00000117419.10	174.21890	438.54860	-1.33180	11.23120	10.02080	HepG2	SUPV3L1
ERI3	ENSG00000117419.10	399.21940	666.03200	-0.73840	10.31980	9.13290	HepG2	AUH
ERI3	ENSG00000117419.10	930.48660	1562.24500	-0.74760	9.77440	8.77580	K562	AQR
ERI3	ENSG00000117419.10	489.08360	867.18970	-0.82630	8.99090	7.96610	K562	HNRNPC
ERI3	ENSG00000117419.10	318.84380	562.79850	-0.81980	9.08350	7.90250	HepG2	PUM2
ERI3	ENSG00000117419.10	293.97130	570.47190	-0.95650	8.83580	7.68230	HepG2	G3BP1
ERI3	ENSG00000117419.10	312.05850	609.45970	-0.96570	8.79770	7.66190	HepG2	EIF4A3
ERI3	ENSG00000117419.10	299.77860	496.45590	-0.72780	8.36190	7.49490	HepG2	SRSF9
ERI3	ENSG00000117419.10	296.21990	563.86460	-0.92870	8.52020	7.26970	HepG2	PABPC4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 75 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ERI3 is not available on ENCORE database.

14 RBPs can affect the splicing of ERI3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ERI3	ENSG00000117419.10	chr1	-	44804716	44804994			44785299	44785416	44820931	44820932	-0.24900	0.00000	0.00000	excluded	K562	PRPF8
SE	ERI3	ENSG00000117419.10	chr1	-	44713610	44713710			44686741	44687312	44750506	44750579	-0.21400	0.00000	0.00001	excluded	K562	U2AF2
SE	ERI3	ENSG00000117419.10	chr1	-	44804716	44804994			44785299	44785416	44818521	44818597	-0.18300	0.00000	0.00012	excluded	K562	TARDBP
SE	ERI3	ENSG00000117419.10	chr1	-	44713610	44713710			44686741	44687312	44750506	44750579	-0.15000	0.00001	0.00037	excluded	K562	U2AF1
MXE	ERI3	ENSG00000117419.10	chr1	-	44750506	44750579	44773981	44774073	44686741	44687312	44778840	44778900	-0.16200	0.00001	0.00025	2included	K562	PUS1
SE	ERI3	ENSG00000117419.10	chr1	-	44804716	44804994			44785299	44785416	44820931	44820932	-0.14900	0.00002	0.00264	excluded	K562	EFTUD2
SE	ERI3	ENSG00000117419.10	chr1	-	44804716	44804994			44785299	44785416	44818521	44818597	-0.13800	0.00003	0.00114	excluded	K562	SRSF1
SE	ERI3	ENSG00000117419.10	chr1	-	44713610	44713710			44686741	44687312	44750506	44750579	-0.08800	0.00005	0.00137	excluded	K562	PUS1
SE	ERI3	ENSG00000117419.10	chr1	-	44713610	44713710			44686741	44687312	44750506	44750579	0.08000	0.00012	0.03451	included	K562	PCBP1
SE	ERI3	ENSG00000117419.10	chr1	-	44713610	44713710			44686741	44687312	44750506	44750579	0.08300	0.00013	0.06464	included	K562	TIA1

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ERI3

General Information

Functions

Localization

Domains (AlphaFold: ERI3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ERI3 is not avaliable on ENCORE database.

35 proteins are bound to ERI3 RNA:

eCLIP assay for ERI3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ERI3 is not available on ENCORE database.

67 RBPs can affect the gene expression of ERI3 :

The Knockdown/knockout RNA-Seq assay for ERI3 is not available on ENCORE database.

14 RBPs can affect the splicing of ERI3 :

The Knockdown/knockout RNA-Seq assay for ERI3 is not avaliable on ENCORE database.