CCDC61

General Information

Gene Name       : CCDC61
Gene ID             : ENSG00000104983.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC61)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC61ENSG00000104983.80.675.623.15ENCSR000AEF
HepG2CCDC61ENSG00000104983.86.162.634.39ENCSR985KAT
K562CCDC61ENSG00000104983.811.226.328.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC61 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC61 RNA is bound by 11 proteins.  







eCLIP assay for CCDC61 is not avaliable on ENCORE database.





11 proteins are bound to CCDC61 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194651830646518396+3'-UTR,CDS,intron-Distal,intron-Proximal4.389807.79455HepG2PPIG
chr194652174146521859+3'-UTR,intron-Distal,intron-Proximal5.7290918.09927K562PUM2
chr194650978546509848+3'-UTR,CDS,intron-Proximal4.706368.52787K562AQR
chr194651926946519337+CDS,intron-Distal,intron-Proximal4.709724.62947HepG2AQR
chr194651927846519358+CDS,intron-Distal,intron-Proximal4.527315.97994K562AQR
chr194651927346519339+CDS,intron-Distal,intron-Proximal4.384434.53454K562PRPF8
chr194652221846522272+intron-Distal8.1038360.08386K562DGCR8
chr194652338146523421+intron-Distal4.241613.10925K562DGCR8
chr194652236746522413+intron-Distal4.280234.70044HepG2DROSHA
chr194652194246522010+intron-Distal4.964097.25584HepG2DROSHA
chr194651880246518869+intron-Distal4.556063.77360K562GTF2F1
chr194652247946522584+intron-Distal6.2014633.12292K562DROSHA
chr194652212246522166+intron-Distal4.8740112.56097K562DGCR8
chr194650314346503249+intron-Distal5.259299.60876HepG2FAM120A
chr194652236046522407+intron-Distal4.202908.61675HepG2DGCR8
chr194650709246507155+intron-Distal4.023983.69425K562TARDBP
chr194652380346523857+intron-Distal3.819113.37130HepG2DGCR8
chr194650319046503244+intron-Distal3.530414.12529K562GTF2F1
chr194650678146506835+intron-Distal,intron-Proximal3.407154.41130K562AQR
chr194652246746522629+intron-Distal5.1741018.75596HepG2DROSHA
chr194652216646522213+intron-Distal5.0739914.81184K562DGCR8
chr194652216846522223+intron-Distal5.6278113.11190HepG2DGCR8
chr194652211246522219+intron-Distal5.5274111.65042HepG2DROSHA
chr194652201046522079+intron-Distal4.885588.17145HepG2DROSHA
chr194652212546522212+intron-Distal6.9611218.08680K562DROSHA
chr194650319446503254+intron-Distal3.468113.69530HepG2CSTF2T
chr194650312046503232+intron-Distal4.276694.13881HepG2PRPF4
chr194650299846503046+intron-Distal3.906333.14687K562CSTF2T
chr194652247046522571+intron-Distal5.8575214.75901HepG2DGCR8
chr194652227246522281+intron-Distal7.8624448.70784K562DGCR8
chr194650438846504463+intron-Distal4.406454.06667K562GTF2F1
chr194652192846521979+intron-Distal5.376159.56767K562DROSHA
chr194652235846522425+intron-Distal6.8964713.73594K562DROSHA
chr194652212046522168+intron-Distal4.796217.12974HepG2DGCR8
chr194649879546498948+intron-Distal,intron-Proximal3.702263.05512HepG2PRPF4
chr194652249946522576+intron-Distal6.0323213.26173K562DGCR8
chr194652235846522410+intron-Distal5.6143210.23313K562DGCR8
chr194650407946504155+intron-Distal3.916703.13028HepG2FAM120A
chr194652222346522281+intron-Distal6.9279330.22921HepG2DGCR8
chr194652195346521990+intron-Distal3.542844.47834HepG2DGCR8
chr194650316846503257+intron-Distal3.486904.50953K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC61 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC61 is not available on ENCORE database.

  • 56 RBPs can affect the levels of CCDC61.  








The Knockdown/knockout RNA-Seq assay for CCDC61 is not available on ENCORE database.





56 RBPs can affect the gene expression of CCDC61 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC61ENSG00000104983.441.1381083.82440-1.026902.147001.45150HepG2ASCC1
CCDC61ENSG00000104983.474.48630115.37850-0.631302.112801.51980HepG2CKAP4
CCDC61ENSG00000104983.4105.4648048.658901.115904.785603.96620HepG2DNAJC2
CCDC61ENSG00000104983.421.7879051.23330-1.233602.444901.40910HepG2AGO1
CCDC61ENSG00000104983.495.69970147.45500-0.623702.414601.84590HepG2ETF1
CCDC61ENSG00000104983.456.38180112.77030-1.000103.805202.82450HepG2EWSR1
CCDC61ENSG00000104983.4132.3709076.686100.787402.911002.22180HepG2HNRNPL
CCDC61ENSG00000104983.4108.1191054.771200.981003.734203.04050HepG2HNRNPU
CCDC61ENSG00000104983.443.9179089.92210-1.033902.203801.63770HepG2MATR3
CCDC61ENSG00000104983.493.3067048.851900.933503.125102.34600HepG2PPIL4
CCDC61ENSG00000104983.4128.6852084.553400.605801.937801.42290HepG2PUM1
CCDC61ENSG00000104983.412.2188051.50610-2.075603.739002.92390HepG2RAVER1
CCDC61ENSG00000104983.442.19380123.24240-1.546407.294506.54610HepG2RBM22
CCDC61ENSG00000104983.435.6384070.04810-0.974902.277001.71380HepG2RPS19
CCDC61ENSG00000104983.4103.0176048.777701.078504.156703.39460HepG2SAFB2
CCDC61ENSG00000104983.432.3465070.30310-1.120002.817201.86960HepG2SERBP1
CCDC61ENSG00000104983.452.83590103.93450-0.976103.037602.33060HepG2SF3A3
CCDC61ENSG00000104983.498.6792052.712300.904502.839701.86980HepG2SMNDC1
CCDC61ENSG00000104983.442.77900139.19290-1.702109.945709.15570HepG2SRFBP1
CCDC61ENSG00000104983.434.1140065.55560-0.942402.275701.76510HepG2SRSF9
CCDC61ENSG00000104983.439.2802072.43630-0.882902.031101.53760HepG2TAF15
CCDC61ENSG00000104983.4170.7398082.344801.051903.513902.56650HepG2UBE2L3
CCDC61ENSG00000104983.463.3704030.574201.051402.609901.87380HepG2UCHL5
CCDC61ENSG00000104983.4485.96680323.454000.587205.093204.36200K562AGGF1
CCDC61ENSG00000104983.4435.19300336.565300.370701.900001.35440K562AKAP8L
CCDC61ENSG00000104983.486.46060326.61560-1.9175010.178009.16080K562AQR
CCDC61ENSG00000104983.4183.56430118.362200.633002.589601.57180K562CSTF2
CCDC61ENSG00000104983.4190.15120337.15030-0.826207.183506.20220K562DDX47
CCDC61ENSG00000104983.484.25990189.39020-1.168404.596003.26870K562EIF3A
CCDC61ENSG00000104983.4139.23250222.20400-0.674403.330902.43470K562EIF4A3
CCDC61ENSG00000104983.4116.96700215.75840-0.883304.153502.73200K562FKBP4
CCDC61ENSG00000104983.4130.05220231.08400-0.829305.022104.24140K562FXR1
CCDC61ENSG00000104983.416.0291063.12420-1.977505.551304.46980K562G3BP2
CCDC61ENSG00000104983.4218.73860298.69010-0.449402.365201.31830K562GLRX3
CCDC61ENSG00000104983.440.12340248.13450-2.6286019.7231018.21140K562HNRNPC
CCDC61ENSG00000104983.4152.69860271.56260-0.830603.382201.78760K562ILF2
CCDC61ENSG00000104983.4534.65930400.142900.418002.733001.83100K562MBNL1
CCDC61ENSG00000104983.4228.73640314.03720-0.457202.012401.31720K562MTPAP
CCDC61ENSG00000104983.499.48120233.77350-1.232607.784906.38760K562PCBP3
CCDC61ENSG00000104983.487.02860179.31080-1.042905.854604.69320K562POLR2G
CCDC61ENSG00000104983.4237.63570152.704700.637902.439101.67210K562PPIG
CCDC61ENSG00000104983.449.29850129.43270-1.392602.635001.90280K562PRPF8
CCDC61ENSG00000104983.4235.81020484.97070-1.040305.142504.03320K562PUF60
CCDC61ENSG00000104983.4220.64910130.292500.759902.956701.50920K562RBM34
CCDC61ENSG00000104983.4125.82270265.29610-1.076205.505703.16320K562RPS3A
CCDC61ENSG00000104983.480.32250165.18660-1.040204.879202.94470K562SDAD1
CCDC61ENSG00000104983.4234.87460344.30840-0.551803.716002.77800K562SF3A3
CCDC61ENSG00000104983.436.3337079.47820-1.129202.776901.80150K562SF3B1
CCDC61ENSG00000104983.490.28380136.66820-0.598101.940201.33570K562SRSF1
CCDC61ENSG00000104983.4209.78680129.094800.700403.270202.11070K562SRSF5
CCDC61ENSG00000104983.4110.76190179.85540-0.699403.129702.25610K562SYNCRIP
CCDC61ENSG00000104983.4249.62140133.409100.903805.200604.02800K562TIA1
CCDC61ENSG00000104983.4228.44810130.959300.802602.514901.48370K562TRA2A
CCDC61ENSG00000104983.426.5186063.20350-1.253003.304702.42860K562U2AF2
CCDC61ENSG00000104983.4274.70770369.95170-0.429402.130501.49380K562UPF1
CCDC61ENSG00000104983.4231.32750316.55340-0.452502.329001.52570K562WDR3
CCDC61ENSG00000104983.4167.97740329.19630-0.970709.320507.86460K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC61 is not available on ENCORE database.





2 RBPs can affect the splicing of CCDC61 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC61ENSG00000104983.4chr19+4649950246499659464987284649876246506265465064240.156000.000920.05949includedK562HNRNPL
A3SSCCDC61ENSG00000104983.4chr19+4652150946521650465215474652165046521335465214080.064000.006610.03692longerK562AQR
A3SSCCDC61ENSG00000104983.4chr19+4650664646506759465066764650675946506265465064240.063000.013780.06958longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC61 is not avaliable on ENCORE database.