C9orf142

General Information

Gene Name : C9orf142
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C9orf142)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C9orf142 is not avaliable on ENCORE database.

Proteins bound to RNA

C9orf142 RNA is bound by 15 proteins.

CanvasJS.com

eCLIP assay for C9orf142 is not avaliable on ENCORE database.

15 proteins are bound to C9orf142 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	139887452	139887522	+	CDS,intron-Proximal	4.93174	20.84527	K562	SF3B4
chr9	139887441	139887552	+	CDS,intron-Proximal	3.23454	17.72702	K562	BUD13
chr9	139887389	139887446	+	CDS,intron-Proximal	4.06561	17.61463	HepG2	PRPF8
chr9	139887476	139887557	+	CDS,intron-Proximal	4.66618	16.99417	K562	AQR
chr9	139887446	139887489	+	intron-Proximal	4.65591	16.82955	HepG2	PRPF8
chr9	139887489	139887551	+	CDS,intron-Proximal	3.80592	13.58885	K562	PRPF8
chr9	139887462	139887533	+	CDS,intron-Proximal	4.11683	13.55166	HepG2	BUD13
chr9	139887445	139887536	+	CDS,intron-Proximal	3.52094	13.43714	K562	EFTUD2
chr9	139887322	139887369	+	intron-Proximal	4.41548	12.81393	K562	PRPF8
chr9	139887150	139887202	+	CDS,intron-Distal,intron-Proximal	3.63364	12.75073	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 39 entries

eCLIP assay for C9orf142 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C9orf142 is not available on ENCORE database.
74 RBPs can affect the levels of C9orf142.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for C9orf142 is not available on ENCORE database.

74 RBPs can affect the gene expression of C9orf142 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C9orf142	ENSG00000148362.6	831.99470	409.00960	1.02430	20.20520	18.78840	K562	AGGF1
C9orf142	ENSG00000148362.6	421.55820	159.15270	1.40520	16.16590	14.17710	K562	TARDBP
C9orf142	ENSG00000148362.6	868.49250	422.02710	1.04110	13.66150	12.50090	K562	PUS1
C9orf142	ENSG00000148362.6	366.40070	160.43610	1.19130	13.11720	11.72620	K562	PTBP1
C9orf142	ENSG00000148362.6	367.46150	153.53350	1.25890	13.38910	11.46680	K562	TIA1
C9orf142	ENSG00000148362.6	2.77140	56.11120	-4.33960	11.82310	10.15460	K562	G3BP2
C9orf142	ENSG00000148362.6	709.40290	411.24460	0.78650	10.55470	9.42170	K562	RBM15
C9orf142	ENSG00000148362.6	528.21790	263.50260	1.00320	10.73330	8.81020	K562	PPIG
C9orf142	ENSG00000148362.6	320.92390	165.11650	0.95860	8.00500	6.54100	K562	MAGOH
C9orf142	ENSG00000148362.6	771.09570	425.60030	0.85730	7.47560	6.35750	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C9orf142 is not available on ENCORE database.

14 RBPs can affect the splicing of C9orf142 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	C9orf142	ENSG00000148362.6	chr9	+	139886914	139887156	139886914	139887014	139887091	139887156	0.11900	0.00000	0.00000	included	K562	PUS1
RI	C9orf142	ENSG00000148362.6	chr9	+	139886914	139887156	139886914	139887014	139887091	139887156	0.11700	0.00000	0.00000	included	K562	AKAP8L
RI	C9orf142	ENSG00000148362.6	chr9	+	139886942	139887156	139886942	139887014	139887091	139887156	0.16000	0.00000	0.00004	included	K562	AQR
RI	C9orf142	ENSG00000148362.6	chr9	+	139887091	139887695	139887091	139887426	139887504	139887695	0.21400	0.00001	0.00008	included	K562	AQR
RI	C9orf142	ENSG00000148362.6	chr9	+	139886914	139887156	139886914	139887014	139887091	139887156	0.08600	0.00003	0.00057	included	K562	RBM15
RI	C9orf142	ENSG00000148362.6	chr9	+	139886942	139887156	139886942	139887014	139887091	139887156	0.13100	0.00026	0.00630	included	K562	FXR1
RI	C9orf142	ENSG00000148362.6	chr9	+	139886914	139887156	139886914	139887014	139887091	139887156	0.07500	0.00027	0.00486	included	K562	UTP18
RI	C9orf142	ENSG00000148362.6	chr9	+	139886942	139887156	139886942	139887014	139887091	139887156	0.05800	0.00030	0.00478	included	K562	AGGF1
RI	C9orf142	ENSG00000148362.6	chr9	+	139887091	139887695	139887091	139887156	139887504	139887695	-0.06900	0.00117	0.06374	excluded	K562	EIF4G2
SE	C9orf142	ENSG00000148362.6	chr9	+	139887091	139887156	139886888	139887014	139887376	139887695	0.17100	0.00261	0.07767	included	K562	HNRNPU

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C9orf142

General Information

Functions

Localization

Domains (AlphaFold: C9orf142)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C9orf142 is not avaliable on ENCORE database.

15 proteins are bound to C9orf142 RNA:

eCLIP assay for C9orf142 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C9orf142 is not available on ENCORE database.

74 RBPs can affect the gene expression of C9orf142 :

The Knockdown/knockout RNA-Seq assay for C9orf142 is not available on ENCORE database.

14 RBPs can affect the splicing of C9orf142 :

The Knockdown/knockout RNA-Seq assay for C9orf142 is not avaliable on ENCORE database.