C9orf142

General Information

Gene Name       : C9orf142
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C9orf142)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C9orf142 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C9orf142 RNA is bound by 15 proteins.  







eCLIP assay for C9orf142 is not avaliable on ENCORE database.





15 proteins are bound to C9orf142 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9139888310139888376+3'-UTR3.018964.94039K562YBX3
chr9139888226139888297+3'-UTR,CDS3.8519010.88316HepG2PPIG
chr9139887466139887534+CDS,intron-Proximal4.2675611.24917HepG2EFTUD2
chr9139888089139888114+CDS3.723454.77136HepG2PPIG
chr9139887452139887522+CDS,intron-Proximal4.9317420.84527K562SF3B4
chr9139887445139887536+CDS,intron-Proximal3.5209413.43714K562EFTUD2
chr9139887441139887552+CDS,intron-Proximal3.2345417.72702K562BUD13
chr9139887124139887181+CDS,intron-Distal,intron-Proximal4.139044.04622HepG2GRWD1
chr9139887026139887102+CDS,intron-Proximal4.789669.63445HepG2EFTUD2
chr9139887090139887144+CDS,intron-Distal,intron-Proximal3.731238.13802K562DDX55
chr9139887150139887202+CDS,intron-Distal,intron-Proximal3.6336412.75073HepG2PRPF8
chr9139887400139887528+CDS,intron-Proximal3.807827.84250HepG2AQR
chr9139887476139887557+CDS,intron-Proximal4.6661816.99417K562AQR
chr9139888033139888072+CDS3.057453.55613HepG2PPIG
chr9139887489139887551+CDS,intron-Proximal3.8059213.58885K562PRPF8
chr9139887855139887861+CDS,intron-Distal3.606213.59112HepG2PPIG
chr9139887392139887476+CDS,intron-Proximal3.3565210.49523K562AQR
chr9139887462139887533+CDS,intron-Proximal4.1168313.55166HepG2BUD13
chr9139887583139887620+CDS4.326226.36347HepG2PPIG
chr9139887460139887525+CDS,intron-Proximal3.659456.92192K562UCHL5
chr9139887452139887530+CDS,intron-Proximal3.409304.25221HepG2LSM11
chr9139887670139887694+CDS3.768754.51003HepG2PPIG
chr9139886960139887004+CDS3.170794.10374K562DDX3X
chr9139887578139887607+CDS3.216235.12722K562BUD13
chr9139886901139886960+CDS3.243973.68137K562DDX3X
chr9139888053139888115+CDS4.199433.87930K562UPF1
chr9139887486139887537+CDS,intron-Proximal4.600485.23082K562DDX24
chr9139887456139887522+CDS,intron-Proximal5.8363612.50933HepG2SF3A3
chr9139887389139887446+CDS,intron-Proximal4.0656117.61463HepG2PRPF8
chr9139887555139887611+CDS3.359479.12131K562PRPF8
chr9139887865139887902+intron-Distal,intron-Proximal4.874885.69951K562AQR
chr9139887173139887234+intron-Distal,intron-Proximal3.206717.40378K562BUD13
chr9139887152139887203+intron-Distal,intron-Proximal4.0903110.08968K562AQR
chr9139887153139887197+intron-Distal,intron-Proximal3.4217210.05297K562PRPF8
chr9139887300139887335+intron-Proximal3.968186.10859HepG2EFTUD2
chr9139887442139887502+intron-Proximal3.663463.60305HepG2SF3B4
chr9139887322139887369+intron-Proximal4.4154812.81393K562PRPF8
chr9139887302139887367+intron-Proximal3.920757.06426HepG2SF3B4
chr9139887446139887489+intron-Proximal4.6559116.82955HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C9orf142 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C9orf142 is not available on ENCORE database.

  • 74 RBPs can affect the levels of C9orf142.  








The Knockdown/knockout RNA-Seq assay for C9orf142 is not available on ENCORE database.





74 RBPs can affect the gene expression of C9orf142 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C9orf142ENSG00000148362.628.2340065.86750-1.222102.927201.82980HepG2AATF
C9orf142ENSG00000148362.622.8010067.49870-1.565804.120002.34170HepG2CSTF2T
C9orf142ENSG00000148362.622.9090071.09460-1.633804.825703.60730HepG2DDX24
C9orf142ENSG00000148362.6191.62620105.575300.859903.266002.60080HepG2DDX6
C9orf142ENSG00000148362.670.8009037.081300.933002.652602.01220HepG2DNAJC2
C9orf142ENSG00000148362.6345.08260257.587900.421802.222701.67400HepG2ETF1
C9orf142ENSG00000148362.6132.1157085.246600.632002.280101.66000HepG2HNRNPL
C9orf142ENSG00000148362.673.7245041.738500.820702.215701.66770HepG2HNRNPU
C9orf142ENSG00000148362.6118.0408058.240101.019103.629302.23220HepG2KHDRBS1
C9orf142ENSG00000148362.6191.58860113.193800.759103.026402.34080HepG2MAGOH
C9orf142ENSG00000148362.6192.50780113.807500.758202.115501.55930HepG2MATR3
C9orf142ENSG00000148362.6262.58300116.472101.172707.027106.03990HepG2NCBP2
C9orf142ENSG00000148362.6155.5486092.793600.745203.151302.33920HepG2NOL12
C9orf142ENSG00000148362.684.2371037.227701.178004.043803.17000HepG2PPIL4
C9orf142ENSG00000148362.6177.3250094.026800.915205.265304.50080HepG2PUM1
C9orf142ENSG00000148362.6152.47960215.29220-0.497701.931401.47800HepG2RBM22
C9orf142ENSG00000148362.6159.2949071.538701.154803.171602.10560HepG2RBM27
C9orf142ENSG00000148362.6184.62060115.881200.671802.807702.26370HepG2NELFE
C9orf142ENSG00000148362.6181.56070107.927300.750302.623602.02140HepG2RECQL
C9orf142ENSG00000148362.6140.2041065.963501.087703.658402.74260HepG2RPS2
C9orf142ENSG00000148362.672.0917037.170900.955602.565401.94060HepG2SAFB2
C9orf142ENSG00000148362.6177.83280106.060700.745503.066202.35640HepG2SF3A3
C9orf142ENSG00000148362.6231.84860108.407901.096603.384902.73920HepG2SF3B4
C9orf142ENSG00000148362.6173.25020243.15800-0.489002.444101.96280HepG2SRFBP1
C9orf142ENSG00000148362.663.93800113.15420-0.823502.537102.07950HepG2SRSF1
C9orf142ENSG00000148362.6161.5359087.454800.885104.325203.57360HepG2SRSF5
C9orf142ENSG00000148362.6159.11590211.10740-0.407901.748001.31760HepG2SSB
C9orf142ENSG00000148362.6189.3953099.462600.929105.413004.59590HepG2SUCLG1
C9orf142ENSG00000148362.648.08310101.70690-1.080803.628603.00190HepG2TAF15
C9orf142ENSG00000148362.695.3177040.562901.232504.357703.75900HepG2TIAL1
C9orf142ENSG00000148362.6159.5968091.591200.801102.376001.60540HepG2UBE2L3
C9orf142ENSG00000148362.6110.3934054.251701.024803.533402.67900HepG2UCHL5
C9orf142ENSG00000148362.6140.1384090.810700.625802.314301.75560HepG2UTP3
C9orf142ENSG00000148362.6119.2948054.972801.117604.344102.96410HepG2XPO5
C9orf142ENSG00000148362.6831.99470409.009601.0243020.2052018.78840K562AGGF1
C9orf142ENSG00000148362.6494.52830380.238500.379002.862601.33100K562AKAP1
C9orf142ENSG00000148362.6719.29690449.469100.678304.495603.16930K562AKAP8
C9orf142ENSG00000148362.6771.09570425.600300.857307.475606.35750K562AKAP8L
C9orf142ENSG00000148362.6666.05060899.55750-0.433602.767502.17940K562AQR
C9orf142ENSG00000148362.6659.00460446.570800.561306.084904.66310K562ATP5C1
C9orf142ENSG00000148362.6481.87820297.562200.695406.719105.19290K562BCLAF1
C9orf142ENSG00000148362.6629.76980488.765500.365602.771401.59610K562CCDC124
C9orf142ENSG00000148362.6258.54860168.378500.618602.635601.38950K562CIRBP
C9orf142ENSG00000148362.6381.92970225.745300.758502.849701.77790K562CSTF2
C9orf142ENSG00000148362.6520.43960385.312700.433603.082801.97870K562DDX3X
C9orf142ENSG00000148362.6570.42130468.147500.285001.879401.32280K562DDX47
C9orf142ENSG00000148362.6507.65550390.667200.377802.758301.45640K562DDX6
C9orf142ENSG00000148362.6628.40010457.931100.456504.325903.19810K562DKC1
C9orf142ENSG00000148362.6738.03720535.461300.462804.554903.66020K562EIF2S2
C9orf142ENSG00000148362.6303.55820188.260000.689103.619301.41160K562EIF3H
C9orf142ENSG00000148362.62.7714056.11120-4.3396011.8231010.15460K562G3BP2
C9orf142ENSG00000148362.61048.82700713.516000.555702.839602.07510K562GRSF1
C9orf142ENSG00000148362.6443.56540157.301401.495504.110202.75280K562IGF2BP2
C9orf142ENSG00000148362.6162.26900302.31440-0.897704.036102.30010K562ILF2
C9orf142ENSG00000148362.642.5253088.44870-1.056502.708201.78720K562KRR1
C9orf142ENSG00000148362.6320.92390165.116500.958608.005006.54100K562MAGOH
C9orf142ENSG00000148362.6600.11480432.354000.472903.352702.13490K562MAK16
C9orf142ENSG00000148362.6297.82980164.751000.854102.714401.80130K562MATR3
C9orf142ENSG00000148362.6681.97100505.957700.430602.185401.39320K562MBNL1
C9orf142ENSG00000148362.6276.60360401.97040-0.539303.406202.03220K562NCBP2
C9orf142ENSG00000148362.6188.23460318.21840-0.757503.671002.22970K562PABPC1
C9orf142ENSG00000148362.6501.17710298.184800.749003.095002.03550K562PABPN1
C9orf142ENSG00000148362.6181.61090329.35890-0.858805.368404.20510K562PCBP3
C9orf142ENSG00000148362.6172.50270252.62390-0.550402.856702.04220K562POLR2G
C9orf142ENSG00000148362.6528.21790263.502601.0032010.733308.81020K562PPIG
C9orf142ENSG00000148362.6366.40070160.436101.1913013.1172011.72620K562PTBP1
C9orf142ENSG00000148362.6868.49250422.027101.0411013.6615012.50090K562PUS1
C9orf142ENSG00000148362.6709.40290411.244600.7865010.554709.42170K562RBM15
C9orf142ENSG00000148362.6258.93950153.729200.752102.438301.65210K562RBM22
C9orf142ENSG00000148362.6508.59570272.767400.898703.573402.14940K562SF1
C9orf142ENSG00000148362.6384.71270536.67830-0.480304.166803.17930K562SF3A3
C9orf142ENSG00000148362.6134.3888058.303501.204706.210304.89180K562SF3B4
C9orf142ENSG00000148362.650.8797099.48000-0.967303.012001.35200K562SND1
C9orf142ENSG00000148362.6266.90180157.303400.762703.243302.48150K562SRSF1
C9orf142ENSG00000148362.6186.0857090.101901.046204.979103.49710K562SRSF4
C9orf142ENSG00000148362.6305.50370148.617101.039505.200803.67970K562SRSF5
C9orf142ENSG00000148362.662.33850111.75200-0.842102.778601.49940K562SSB
C9orf142ENSG00000148362.67.9474055.07620-2.792907.113304.29160K562TAF15
C9orf142ENSG00000148362.6421.55820159.152701.4052016.1659014.17710K562TARDBP
C9orf142ENSG00000148362.6367.46150153.533501.2589013.3891011.46680K562TIA1
C9orf142ENSG00000148362.6314.54640150.777201.060803.351902.12850K562TRA2A
C9orf142ENSG00000148362.624.9418054.34240-1.123502.293801.31030K562U2AF1
C9orf142ENSG00000148362.622.7892056.13940-1.300703.218102.35400K562U2AF2
C9orf142ENSG00000148362.6360.86060493.43560-0.451403.039602.12400K562WDR3
C9orf142ENSG00000148362.6747.352201013.45410-0.439403.918202.85900K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C9orf142 is not available on ENCORE database.





14 RBPs can affect the splicing of C9orf142 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC9orf142ENSG00000148362.6chr9+139887091139887426139886942139887014139887504139887695-0.062000.006730.05934excludedK562AQR
SEC9orf142ENSG00000148362.6chr9+1398870911398871561398868881398870141398873761398876950.171000.002610.07767includedK562HNRNPU
RIC9orf142ENSG00000148362.6chr9+1398869141398871561398869141398870141398870911398871560.119000.000000.00000includedK562PUS1
RIC9orf142ENSG00000148362.6chr9+139887091139887695139887091139887156139887504139887695-0.069000.001170.06374excludedK562EIF4G2
RIC9orf142ENSG00000148362.6chr9+1398870911398876951398870911398874261398875041398876950.437000.003250.08357includedHepG2TIA1
RIC9orf142ENSG00000148362.6chr9+1398869421398871561398869421398870141398870911398871560.058000.000300.00478includedK562AGGF1
RIC9orf142ENSG00000148362.6chr9+1398869141398871561398869141398870141398870911398871560.117000.000000.00000includedK562AKAP8L
RIC9orf142ENSG00000148362.6chr9+1398869141398871561398869141398870141398870911398871560.086000.000030.00057includedK562RBM15
RIC9orf142ENSG00000148362.6chr9+1398870911398876951398870911398874261398875041398876950.241000.011960.09795includedHepG2NCBP2
RIC9orf142ENSG00000148362.6chr9+1398870911398876951398870911398874261398875041398876950.462000.002650.04280includedHepG2FUBP3
RIC9orf142ENSG00000148362.6chr9+1398869421398871561398869421398870141398870911398871560.143000.012920.09443includedHepG2RBM22
RIC9orf142ENSG00000148362.6chr9+1398869141398871561398869141398870141398870911398871560.075000.000270.00486includedK562UTP18
RIC9orf142ENSG00000148362.6chr9+1398870911398876951398870911398874261398875041398876950.214000.000010.00008includedK562AQR
RIC9orf142ENSG00000148362.6chr9+1398870911398876951398870911398871521398873761398876950.115000.013060.06808includedK562AQR
RIC9orf142ENSG00000148362.6chr9+1398869421398871561398869421398870141398870911398871560.160000.000000.00004includedK562AQR
RIC9orf142ENSG00000148362.6chr9+1398869421398871561398869421398870141398870911398871560.131000.000260.00630includedK562FXR1
RIC9orf142ENSG00000148362.6chr9+1398870911398876951398870911398871521398873761398876950.154000.007320.08900includedK562FXR1
MXEC9orf142ENSG00000148362.6chr9+1398877941398878631398880311398881161398875041398876951398882171398884280.150000.006950.095321includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C9orf142 is not avaliable on ENCORE database.