C2CD2

General Information

Gene Name       : C2CD2
Gene ID             : ENSG00000157617.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C2CD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C2CD2ENSG00000157617.165.876.025.95ENCSR000AEF
HepG2C2CD2ENSG00000157617.169.6310.5310.08ENCSR985KAT
K562C2CD2ENSG00000157617.166.587.356.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C2CD2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C2CD2 RNA is bound by 8 proteins.  







eCLIP assay for C2CD2 is not avaliable on ENCORE database.





8 proteins are bound to C2CD2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr214337389043373984-5'-UTR,intron-Distal3.204927.91814HepG2DDX3X
chr214337369043373793-5'-UTR,CDS,intron-Distal,intron-Proximal4.6737210.52110HepG2DDX3X
chr214336225243362313-CDS,intron-Distal,intron-Proximal3.792205.52342HepG2PPIG
chr214333896243339039-CDS,intron-Distal,intron-Proximal4.435464.16554HepG2PPIG
chr214335187643351952-intron-Distal4.210123.19125K562GTF2F1
chr214333910043339318-intron-Distal,intron-Proximal4.108504.85988HepG2AGGF1
chr214335190843351999-intron-Distal5.108448.10881HepG2FAM120A
chr214336825543368395-intron-Distal4.709506.46806HepG2DKC1
chr214333113443331178-intron-Distal3.767753.29026K562KHDRBS1
chr214335234143352414-intron-Distal4.505115.93727HepG2CSTF2T
chr214333911043339233-intron-Distal,intron-Proximal4.7381911.63577K562AGGF1
chr214333923343339309-intron-Distal,intron-Proximal3.857414.89304K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C2CD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C2CD2 is not available on ENCORE database.

  • 76 RBPs can affect the levels of C2CD2.  








The Knockdown/knockout RNA-Seq assay for C2CD2 is not available on ENCORE database.





76 RBPs can affect the gene expression of C2CD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C2CD2ENSG00000157617.12463.65690647.75510-0.482402.919301.95100HepG2ABCF1
C2CD2ENSG00000157617.12432.04870605.98490-0.488104.739503.75680HepG2AKAP8L
C2CD2ENSG00000157617.12556.47100370.731000.585803.632302.61150HepG2BCLAF1
C2CD2ENSG00000157617.12308.55980672.96620-1.125008.818507.47990HepG2CNOT7
C2CD2ENSG00000157617.12690.73810472.724500.547004.071903.25250HepG2CPSF6
C2CD2ENSG00000157617.12475.68720363.687600.387202.207501.33170HepG2DHX30
C2CD2ENSG00000157617.12387.29810577.06390-0.575305.754204.84170HepG2DKC1
C2CD2ENSG00000157617.12330.13390467.54690-0.502102.727101.81200HepG2EEF2
C2CD2ENSG00000157617.12978.93340565.473300.791708.087007.11120HepG2EIF2S1
C2CD2ENSG00000157617.121046.67590608.449600.782506.075005.08520HepG2EIF4B
C2CD2ENSG00000157617.121213.999901007.078000.269502.721402.12460HepG2ETF1
C2CD2ENSG00000157617.12678.55430392.866100.788308.461907.12560HepG2FUBP3
C2CD2ENSG00000157617.12856.68070584.895100.550504.096303.29570HepG2G3BP1
C2CD2ENSG00000157617.12247.53790337.93280-0.449102.072301.30240HepG2GEMIN5
C2CD2ENSG00000157617.12249.79650380.68090-0.607803.572302.85070HepG2HNRNPA1
C2CD2ENSG00000157617.12511.34080672.57030-0.395403.257402.25450HepG2HNRNPA2B1
C2CD2ENSG00000157617.12639.05140520.662800.295502.201201.55590HepG2HNRNPF
C2CD2ENSG00000157617.12751.32820592.289800.343002.001801.40070HepG2HNRNPK
C2CD2ENSG00000157617.12315.70860511.38220-0.695805.023004.20080HepG2HNRNPLL
C2CD2ENSG00000157617.12293.54620451.18870-0.620104.915503.68860HepG2HNRNPM
C2CD2ENSG00000157617.12870.27640594.528400.549604.412703.57580HepG2IGF2BP2
C2CD2ENSG00000157617.12526.27760429.673500.292502.090201.44290HepG2ILF2
C2CD2ENSG00000157617.12314.17490501.40830-0.674404.764003.15820HepG2LIN28B
C2CD2ENSG00000157617.12413.34280634.27550-0.617804.071903.32050HepG2MATR3
C2CD2ENSG00000157617.12491.30290649.21290-0.402102.208601.64080HepG2NCBP2
C2CD2ENSG00000157617.12560.77370826.38380-0.559403.396501.80350HepG2NKRF
C2CD2ENSG00000157617.12433.62480578.15130-0.415002.248701.59270HepG2PABPC4
C2CD2ENSG00000157617.12706.03370581.512300.279802.109601.56780HepG2PCBP1
C2CD2ENSG00000157617.12276.94420516.36450-0.898805.875704.16390HepG2PRPF6
C2CD2ENSG00000157617.12466.61660323.594200.528002.906202.07890HepG2PRPF8
C2CD2ENSG00000157617.12856.88450640.827900.419103.761403.04990HepG2QKI
C2CD2ENSG00000157617.12757.06100473.943400.675603.433502.65050HepG2RAVER1
C2CD2ENSG00000157617.12678.81440841.72140-0.310302.558802.05550HepG2RBM22
C2CD2ENSG00000157617.12763.83790581.599500.393102.946702.25440HepG2RBM25
C2CD2ENSG00000157617.12446.34930658.51940-0.561105.596004.86900HepG2NELFE
C2CD2ENSG00000157617.12877.16740560.861300.645106.766205.76540HepG2RPLP0
C2CD2ENSG00000157617.12687.40680465.732100.561602.982802.00450HepG2RPS10
C2CD2ENSG00000157617.12559.75070320.099900.806205.924404.82010HepG2RRP9
C2CD2ENSG00000157617.12481.44790374.598200.361902.623301.99340HepG2SAFB2
C2CD2ENSG00000157617.12573.01830799.13280-0.479902.819702.13940HepG2SF3A3
C2CD2ENSG00000157617.12697.63930506.161700.462803.216402.45850HepG2SF3B1
C2CD2ENSG00000157617.12767.54910616.040400.317102.563601.99040HepG2SF3B4
C2CD2ENSG00000157617.12767.74750563.195700.446902.014501.35230HepG2SNRNP70
C2CD2ENSG00000157617.121259.97650950.676600.406305.476904.83740HepG2SRFBP1
C2CD2ENSG00000157617.12764.97960643.019200.250501.776301.37340HepG2SRSF1
C2CD2ENSG00000157617.12777.05290523.135900.570707.678606.84350HepG2SRSF9
C2CD2ENSG00000157617.12500.46630825.38310-0.7218011.7154010.80320HepG2SSB
C2CD2ENSG00000157617.12778.17380577.988400.429004.002303.34710HepG2TAF15
C2CD2ENSG00000157617.12623.84010408.705300.610005.902405.22370HepG2TIAL1
C2CD2ENSG00000157617.12389.37540559.42680-0.522803.460902.76340HepG2U2AF1
C2CD2ENSG00000157617.12334.36040246.687600.438602.023101.37350HepG2UCHL5
C2CD2ENSG00000157617.12239.94670382.38280-0.672303.075602.01780HepG2UPF2
C2CD2ENSG00000157617.12455.51050684.23050-0.587006.534905.68000HepG2UTP3
C2CD2ENSG00000157617.12425.33140605.34280-0.509202.723901.63860HepG2XPO5
C2CD2ENSG00000157617.12637.36760475.103100.423804.179303.38030HepG2ZC3H8
C2CD2ENSG00000157617.12579.67100825.56620-0.510105.816705.04230K562AGGF1
C2CD2ENSG00000157617.12656.48910907.16640-0.466603.972902.75180K562AKAP8
C2CD2ENSG00000157617.12560.93040859.03750-0.614906.057305.06680K562AKAP8L
C2CD2ENSG00000157617.12253.90970349.17060-0.459602.395301.42920K562CCAR1
C2CD2ENSG00000157617.12402.55210554.50750-0.462003.093001.72990K562CIRBP
C2CD2ENSG00000157617.121087.22510894.256200.281802.747302.09870K562DDX47
C2CD2ENSG00000157617.12672.34040501.528700.422802.314001.37770K562EIF3D
C2CD2ENSG00000157617.12414.33370327.941100.337302.030801.34060K562EIF3G
C2CD2ENSG00000157617.12709.09400875.65690-0.304401.946401.30640K562GRSF1
C2CD2ENSG00000157617.12328.88190497.97310-0.598504.404403.66870K562HNRNPC
C2CD2ENSG00000157617.12296.86300470.34850-0.663904.294203.11950K562HNRNPM
C2CD2ENSG00000157617.12521.37940688.32090-0.400703.369802.38630K562HNRNPU
C2CD2ENSG00000157617.12680.26150543.741900.323102.156901.41000K562MAGOH
C2CD2ENSG00000157617.12631.52950872.67750-0.466603.510102.25300K562MAK16
C2CD2ENSG00000157617.12513.22340715.84800-0.480102.519301.68610K562NAA15
C2CD2ENSG00000157617.12502.88780649.15270-0.368302.270301.52830K562PPIG
C2CD2ENSG00000157617.12975.652901184.86700-0.280302.092401.38260K562PUF60
C2CD2ENSG00000157617.12467.50970851.94030-0.865809.449408.49510K562PUS1
C2CD2ENSG00000157617.12640.27520830.07850-0.374603.120802.49660K562RBM15
C2CD2ENSG00000157617.12277.98300426.21730-0.616604.384902.65140K562RBM25
C2CD2ENSG00000157617.12283.27960407.35200-0.524003.253902.17670K562RCC2
C2CD2ENSG00000157617.12672.88230464.310000.535203.390702.48350K562RPS19
C2CD2ENSG00000157617.12687.40730885.51460-0.365403.521202.08110K562TROVE2
C2CD2ENSG00000157617.12941.98270739.032600.350003.255502.34500K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C2CD2 is not available on ENCORE database.





1 RBPs can affect the splicing of C2CD2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEC2CD2ENSG00000157617.12chr21-4332710043327275433277684332789343325832433259464332956743329632-0.411000.000090.044752includedK562DDX21

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C2CD2 is not avaliable on ENCORE database.