ATG12

General Information

Gene Name       : ATG12
Gene ID             : ENSG00000145782.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATG12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATG12ENSG00000145782.1236.0034.4935.25ENCSR000AEF
HepG2ATG12ENSG00000145782.1226.7539.8833.31ENCSR985KAT
K562ATG12ENSG00000145782.1244.5841.2442.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATG12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATG12 RNA is bound by 15 proteins.  







eCLIP assay for ATG12 is not avaliable on ENCORE database.





15 proteins are bound to ATG12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5115165542115165656-3'-UTR,intron-Distal5.107425.97844K562AKAP1
chr5115166270115166315-3'-UTR,intron-Distal,intron-Proximal4.1366710.50859K562UPF1
chr5115165522115165565-3'-UTR,intron-Distal4.121376.36782K562UPF1
chr5115165594115165625-3'-UTR,intron-Distal3.600464.24288K562UPF1
chr5115166112115166138-3'-UTR,intron-Distal4.074826.74636K562UPF1
chr5115165762115165816-3'-UTR,intron-Distal3.858347.50442K562UPF1
chr5115166423115166542-3'-UTR,intron-Distal6.0987136.39790HepG2UPF1
chr5115165538115165625-3'-UTR,intron-Distal4.117757.11247HepG2UPF1
chr5115168297115168387-3'-UTR,CDS,intron-Distal,intron-Proximal5.151577.53537HepG2U2AF2
chr5115167348115167515-3'-UTR,CDS,intron-Distal,intron-Proximal3.918128.08603HepG2BCLAF1
chr5115165415115165476-3'-UTR,intron-Distal5.355769.20661K562UPF1
chr5115166259115166298-3'-UTR,intron-Distal,intron-Proximal4.425394.01524K562FAM120A
chr5115166408115166469-3'-UTR,intron-Distal4.9826119.34116K562UPF1
chr5115166322115166370-3'-UTR,intron-Distal,intron-Proximal4.8469118.26619K562UPF1
chr5115165759115165822-3'-UTR,intron-Distal3.713725.87389HepG2UPF1
chr5115166469115166531-3'-UTR,intron-Distal3.6178619.39206K562UPF1
chr5115166414115166466-3'-UTR,intron-Distal3.268383.95599K562AKAP1
chr5115177162115177262-5'-UTR,CDS,intron-Distal,intron-Proximal3.901373.06853K562LIN28B
chr5115177022115177086-5'-UTR,CDS,intron-Distal3.031425.03211K562AQR
chr5115173401115173510-5'-UTR,CDS,intron-Distal,intron-Proximal3.006215.72645K562BUD13
chr5115177150115177252-5'-UTR,CDS,intron-Distal,intron-Proximal3.712735.06399K562DDX3X
chr5115177110115177244-CDS,intron-Distal,intron-Proximal3.049665.13250K562YBX3
chr5115177083115177231-CDS,intron-Distal4.155557.58497HepG2GRWD1
chr5115177140115177211-CDS,intron-Distal3.409845.39086K562UCHL5
chr5115173661115173744-intron-Distal3.556724.31768HepG2KHSRP
chr5115169672115169790-intron-Distal4.338644.91164HepG2HNRNPL
chr5115171524115171616-intron-Distal3.816005.33504HepG2HLTF
chr5115169573115169647-intron-Distal3.943933.19026HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATG12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATG12 is not available on ENCORE database.

  • 61 RBPs can affect the levels of ATG12.  








The Knockdown/knockout RNA-Seq assay for ATG12 is not available on ENCORE database.





61 RBPs can affect the gene expression of ATG12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATG12ENSG00000145782.8858.377801271.21860-0.566504.275503.63450HepG2AKAP1
ATG12ENSG00000145782.8470.21920692.13430-0.557704.187203.35660HepG2CPSF6
ATG12ENSG00000145782.81073.070801299.24280-0.275903.305002.50710HepG2DAZAP1
ATG12ENSG00000145782.8614.79110749.09880-0.285102.603001.79090HepG2DDX19B
ATG12ENSG00000145782.8851.52210649.109000.391503.065302.10290HepG2DDX24
ATG12ENSG00000145782.8918.521501217.81540-0.406901.826201.30680HepG2DDX3X
ATG12ENSG00000145782.8542.81530806.77700-0.571708.743407.66220HepG2DNAJC2
ATG12ENSG00000145782.8834.075201121.15320-0.426703.054902.32780HepG2FXR1
ATG12ENSG00000145782.8802.717701040.18530-0.373902.242701.64060HepG2G3BP1
ATG12ENSG00000145782.8808.273701052.92850-0.381502.677801.98970HepG2HNRNPK
ATG12ENSG00000145782.8448.41260908.07910-1.0180022.3423020.73920HepG2HNRNPU
ATG12ENSG00000145782.8610.52550791.39460-0.374303.134702.36780HepG2IGF2BP1
ATG12ENSG00000145782.8900.913101206.95380-0.421902.513201.72300HepG2LARP4
ATG12ENSG00000145782.8715.810901127.86730-0.655905.580804.71020HepG2MATR3
ATG12ENSG00000145782.8921.79830748.343000.300702.133301.41830HepG2MSI2
ATG12ENSG00000145782.8916.731801154.47290-0.332701.891301.36200HepG2NCBP2
ATG12ENSG00000145782.8855.602801288.32780-0.590508.578507.26220HepG2NOL12
ATG12ENSG00000145782.8814.48220988.27890-0.279002.660302.06270HepG2PCBP1
ATG12ENSG00000145782.8639.24100809.93850-0.341502.945202.18760HepG2PPIL4
ATG12ENSG00000145782.8880.86600709.699900.311602.745601.97400HepG2PRPF4
ATG12ENSG00000145782.8815.234101005.57540-0.302702.608202.07420HepG2PTBP1
ATG12ENSG00000145782.8907.744801229.82840-0.438104.118103.40730HepG2PUF60
ATG12ENSG00000145782.81032.391701305.52500-0.338604.925404.18040HepG2PUM1
ATG12ENSG00000145782.8787.107701304.56650-0.7289011.6593010.33270HepG2PUM2
ATG12ENSG00000145782.8662.69060824.95830-0.316001.910701.37950HepG2PUS1
ATG12ENSG00000145782.81602.07940866.781200.886106.315705.27490HepG2RAVER1
ATG12ENSG00000145782.81557.586101037.162800.586609.753108.91560HepG2RBM22
ATG12ENSG00000145782.8864.986401119.13820-0.371604.150003.51150HepG2NELFE
ATG12ENSG00000145782.8578.81880865.54910-0.580502.216801.49650HepG2RPS2
ATG12ENSG00000145782.8619.41780808.69990-0.384704.142703.38210HepG2SAFB2
ATG12ENSG00000145782.81537.23480990.554600.633904.699603.80720HepG2SF3A3
ATG12ENSG00000145782.8964.24560741.171700.379502.741202.03810HepG2SF3B1
ATG12ENSG00000145782.8979.940001179.22990-0.267102.850802.13900HepG2SLBP
ATG12ENSG00000145782.8740.60110943.10660-0.348704.224803.45960HepG2SMN1
ATG12ENSG00000145782.81614.320901171.436000.462508.268207.52930HepG2SRFBP1
ATG12ENSG00000145782.81335.908401092.812500.289702.962702.47770HepG2SRSF1
ATG12ENSG00000145782.8834.566601214.28580-0.541008.561507.53750HepG2SRSF5
ATG12ENSG00000145782.8703.598401380.96950-0.9729028.5868026.93820HepG2SUCLG1
ATG12ENSG00000145782.8473.94320624.36400-0.397702.685801.75670HepG2SUPT6H
ATG12ENSG00000145782.8481.57320882.46610-0.8738013.5762012.61120HepG2TIAL1
ATG12ENSG00000145782.8692.30870890.25000-0.362803.925203.27750HepG2TRIM56
ATG12ENSG00000145782.8836.435701201.50310-0.522505.755804.43790HepG2TUFM
ATG12ENSG00000145782.81238.02400790.907000.646406.951305.96630HepG2U2AF1
ATG12ENSG00000145782.8928.394701271.78060-0.454003.190202.29170HepG2UBE2L3
ATG12ENSG00000145782.81084.36250848.130900.354403.920703.22620HepG2UTP3
ATG12ENSG00000145782.81260.45040966.150600.383505.925105.20360HepG2ZNF622
ATG12ENSG00000145782.81824.020301497.063100.284903.502602.87640K562AGGF1
ATG12ENSG00000145782.82362.789301775.543400.412103.930503.25470K562AQR
ATG12ENSG00000145782.8713.456801056.65280-0.566607.467905.19980K562BCCIP
ATG12ENSG00000145782.8728.420801113.07070-0.611707.569606.26730K562CPSF6
ATG12ENSG00000145782.8843.05460574.313200.553702.569601.60390K562EIF3A
ATG12ENSG00000145782.81828.521802135.79110-0.224102.242201.39340K562EIF4G2
ATG12ENSG00000145782.8938.769401225.46240-0.384503.146102.19620K562HNRNPU
ATG12ENSG00000145782.81962.005401614.649400.281002.089201.39490K562HSPD1
ATG12ENSG00000145782.81015.012701311.71660-0.370002.182701.30220K562IGF2BP2
ATG12ENSG00000145782.81101.886101376.19130-0.320702.737101.81910K562MATR3
ATG12ENSG00000145782.8768.809501037.33420-0.432203.706102.68280K562METAP2
ATG12ENSG00000145782.81047.26800801.677400.385402.625701.89460K562PRPF8
ATG12ENSG00000145782.81962.184502428.54660-0.307604.040902.87570K562PUM2
ATG12ENSG00000145782.81814.719001505.246100.269602.647902.06620K562RBM15
ATG12ENSG00000145782.81079.87140816.780500.402702.370001.61660K562RPS19
ATG12ENSG00000145782.81530.497202033.17750-0.409705.483603.45430K562SUCLG1
ATG12ENSG00000145782.81069.847401329.23770-0.313202.131001.50520K562TARDBP
ATG12ENSG00000145782.8948.470601282.17630-0.434904.513603.42980K562TIA1
ATG12ENSG00000145782.8623.65740828.78660-0.410202.588901.68670K562TIAL1
ATG12ENSG00000145782.81004.269301257.98450-0.325002.359001.36740K562TRA2A
ATG12ENSG00000145782.8533.64240821.69030-0.622702.682801.68250K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATG12 is not available on ENCORE database.





6 RBPs can affect the splicing of ATG12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATG12ENSG00000145782.8chr5-115176193115176309115173324115173461115176514115176631-0.685000.000040.00131excludedK562SF3B4
SEATG12ENSG00000145782.8chr5-1151761931151763091151733241151734611151770861151775340.071000.000000.00948includedHepG2IGF2BP1
SEATG12ENSG00000145782.8chr5-115176193115176309115173324115173461115177086115177534-0.055000.000210.01422excludedHepG2SFPQ
SEATG12ENSG00000145782.8chr5-115176193115176309115173324115173461115176514115176631-0.632000.001570.02888excludedK562U2AF2
SEATG12ENSG00000145782.8chr5-1151765141151766311151733241151734611151770861151772410.131000.000000.00000includedK562HNRNPC
SEATG12ENSG00000145782.8chr5-115176193115176309115173324115173461115176514115176631-0.612000.000180.00444excludedK562HNRNPC
A3SSATG12ENSG00000145782.8chr5-1151682981151684401151682981151683611151733241151734440.058000.000060.00056longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATG12 is not avaliable on ENCORE database.