ATF1

General Information

Gene Name       : ATF1
Gene ID             : ENSG00000123268.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATF1ENSG00000123268.825.2924.4124.85ENCSR000AEF
HepG2ATF1ENSG00000123268.826.4121.4423.93ENCSR985KAT
K562ATF1ENSG00000123268.844.9141.3943.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATF1 RNA is bound by 9 proteins.  







eCLIP assay for ATF1 is not avaliable on ENCORE database.





9 proteins are bound to ATF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125120799951208071+3'-UTR,CDS,intron-Proximal3.498194.94119K562SF3B4
chr125118969051189768+3'-UTR,CDS,intron-Distal,intron-Proximal5.103628.37653K562IGF2BP1
chr125118970051189788+3'-UTR,CDS,intron-Distal3.114653.35612K562IGF2BP2
chr125120806251208159+3'-UTR,CDS,intron-Proximal4.257354.78334K562IGF2BP2
chr125120793851207976+3'-UTR,CDS,intron-Proximal3.658663.06853K562LIN28B
chr125115838651158501+5'-UTR,intron-Distal,intron-Proximal4.165253.17740K562CSTF2T
chr125115840651158511+5'-UTR,intron-Distal,intron-Proximal3.658835.56645HepG2CSTF2T
chr125117393851174022+5'-UTR,CDS,intron-Proximal4.389563.98311K562IGF2BP1
chr125115800951158093+5'-UTR,intron-Distal,intron-Proximal3.402448.50482K562DDX3X
chr125115787651157965+5'-UTR,intron-Distal4.614458.39621K562DDX3X
chr125116585351165943+intron-Distal5.534257.72091K562FMR1
chr125117906151179102+intron-Distal3.442383.35535K562AGGF1
chr125115861351158776+intron-Distal3.480274.76898K562CSTF2T
chr125117685251176944+intron-Distal3.921353.02234K562KHSRP
chr125116584651165955+intron-Distal5.8117616.30731K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATF1 is not available on ENCORE database.

  • 61 RBPs can affect the levels of ATF1.  








The Knockdown/knockout RNA-Seq assay for ATF1 is not available on ENCORE database.





61 RBPs can affect the gene expression of ATF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATF1ENSG00000123268.4386.52140557.52160-0.528502.853202.31330HepG2AKAP1
ATF1ENSG00000123268.4229.17350338.88150-0.564302.376401.50980HepG2BCCIP
ATF1ENSG00000123268.4386.91460615.63110-0.670104.271303.04760HepG2CCAR1
ATF1ENSG00000123268.4173.98270333.18580-0.937405.448804.40860HepG2DDX55
ATF1ENSG00000123268.4655.42630446.262200.554402.364801.46100HepG2DDX59
ATF1ENSG00000123268.4156.28550277.19010-0.826706.966005.99680HepG2DNAJC2
ATF1ENSG00000123268.4228.29090441.01200-0.949907.623906.67620HepG2EIF2S1
ATF1ENSG00000123268.4335.13030243.771400.459102.483301.45880HepG2EIF3G
ATF1ENSG00000123268.4363.58780487.34980-0.422702.058201.50440HepG2EIF4A3
ATF1ENSG00000123268.4874.92160510.619400.776808.598007.63860HepG2ETF1
ATF1ENSG00000123268.4328.50130491.77720-0.582103.673502.88470HepG2FXR1
ATF1ENSG00000123268.4231.44690456.16300-0.978908.211007.09550HepG2G3BP1
ATF1ENSG00000123268.4209.40790445.50810-1.089108.998407.88750HepG2GPKOW
ATF1ENSG00000123268.4206.74040425.15410-1.040208.642707.59580HepG2HNRNPLL
ATF1ENSG00000123268.4227.11940312.00290-0.458102.714702.11400HepG2HNRNPU
ATF1ENSG00000123268.4341.07340463.66820-0.443002.338401.71220HepG2IGF2BP2
ATF1ENSG00000123268.4364.57240491.94920-0.432302.216601.62720HepG2MAGOH
ATF1ENSG00000123268.4338.25810494.69250-0.548403.004502.35050HepG2MATR3
ATF1ENSG00000123268.4345.79850506.33710-0.550203.220902.53990HepG2NCBP2
ATF1ENSG00000123268.4349.70180465.45680-0.412501.997401.34660HepG2NOL12
ATF1ENSG00000123268.4279.92000450.88870-0.687804.650803.72590HepG2PABPC4
ATF1ENSG00000123268.4192.99080369.71030-0.937906.633203.79950HepG2PPIG
ATF1ENSG00000123268.4429.41570310.689800.466803.580302.71040HepG2PRPF4
ATF1ENSG00000123268.4244.96080396.61710-0.695205.788705.05610HepG2PTBP1
ATF1ENSG00000123268.4377.35150471.26420-0.320602.006301.42920HepG2PUM2
ATF1ENSG00000123268.4185.69760322.05900-0.794403.225002.57200HepG2PUS1
ATF1ENSG00000123268.4535.03320344.831500.633602.774602.06900HepG2RAVER1
ATF1ENSG00000123268.4288.66370441.38740-0.612704.888204.20470HepG2NELFE
ATF1ENSG00000123268.4238.47880375.13500-0.653503.107401.48980HepG2RTF1
ATF1ENSG00000123268.4303.09040420.83410-0.473502.468401.79910HepG2SF3B1
ATF1ENSG00000123268.4204.57790351.54780-0.781104.549803.29740HepG2SMNDC1
ATF1ENSG00000123268.4690.05760482.054900.517405.629104.98430HepG2SRFBP1
ATF1ENSG00000123268.4270.22230414.32240-0.616603.884803.04180HepG2TARDBP
ATF1ENSG00000123268.4201.57140305.87630-0.601704.268003.59730HepG2TRIM56
ATF1ENSG00000123268.4693.52680351.913400.9786010.157908.93760HepG2U2AF1
ATF1ENSG00000123268.4213.17270327.69390-0.620304.197903.48450HepG2UTP3
ATF1ENSG00000123268.4205.02290326.51160-0.671303.326002.53610HepG2XRN2
ATF1ENSG00000123268.4278.26810373.29420-0.423802.926202.36830HepG2ZNF622
ATF1ENSG00000123268.41166.47580936.959300.316002.241401.65060K562AKAP8L
ATF1ENSG00000123268.41489.924101134.733000.392803.333602.70180K562AQR
ATF1ENSG00000123268.4512.19460658.08310-0.361602.890401.91030K562BCLAF1
ATF1ENSG00000123268.4979.811601205.87310-0.299502.886001.75290K562CPEB4
ATF1ENSG00000123268.4379.93820499.25400-0.394002.303601.35640K562CSTF2
ATF1ENSG00000123268.41208.016801008.300200.260602.257301.47740K562DKC1
ATF1ENSG00000123268.4858.34540590.383500.539803.052901.70420K562EEF2
ATF1ENSG00000123268.4729.87970955.08450-0.388002.650801.75670K562FTO
ATF1ENSG00000123268.4771.54600612.628300.332602.756702.15220K562FXR1
ATF1ENSG00000123268.4897.99500663.957000.435502.425901.77020K562G3BP2
ATF1ENSG00000123268.4665.228901057.23600-0.668407.825206.48530K562GPKOW
ATF1ENSG00000123268.4547.47530692.96660-0.340002.069101.54240K562HNRNPC
ATF1ENSG00000123268.4874.332101127.72110-0.367203.107001.98190K562HNRNPL
ATF1ENSG00000123268.4572.92950757.86130-0.403603.583402.56650K562HNRNPU
ATF1ENSG00000123268.41036.733901471.30860-0.505104.720003.24210K562MSI2
ATF1ENSG00000123268.4676.10320827.25640-0.291102.513001.74180K562MTPAP
ATF1ENSG00000123268.41112.80180780.799600.511103.211002.24640K562NAA15
ATF1ENSG00000123268.4722.03500919.20640-0.348304.186803.29000K562NSUN2
ATF1ENSG00000123268.4738.30400555.178100.411202.808602.05380K562PRPF8
ATF1ENSG00000123268.4424.33030621.28640-0.550104.308703.14240K562PSIP1
ATF1ENSG00000123268.41184.94870905.382600.388103.327602.68660K562RBM15
ATF1ENSG00000123268.4530.89420906.94740-0.7726012.9009011.24370K562SF3A3
ATF1ENSG00000123268.4482.94030634.69860-0.394202.438901.56030K562TRIM56
ATF1ENSG00000123268.4377.40920569.02680-0.592402.691201.68790K562UCHL5
ATF1ENSG00000123268.4776.17060974.65010-0.328503.470902.67190K562UPF1
ATF1ENSG00000123268.4756.922901018.39560-0.428102.993501.73890K562UTP3
ATF1ENSG00000123268.4499.05620833.98380-0.740809.286407.64380K562WDR3
ATF1ENSG00000123268.41025.30900867.201800.241502.202601.44060K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATF1 is not available on ENCORE database.





4 RBPs can affect the splicing of ATF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATF1ENSG00000123268.4chr12+512077925120797551203238512033725120806251208222-0.053000.000010.00015excludedK562AQR
SEATF1ENSG00000123268.4chr12+511739225117402151158074511580905118969151189792-0.055000.001000.01217excludedK562AQR
A3SSATF1ENSG00000123268.4chr12+5120776951207975512077925120797551203238512033720.080000.000000.00000longerK562AQR
MXEATF1ENSG00000123268.4chr12+51189691511897925120779251207975511739225117402151208062512082220.118000.005290.056901includedK562DROSHA
MXEATF1ENSG00000123268.4chr12+51203238512033725120779251207975511739225117402151208062512082220.064000.000000.000011includedK562AQR
MXEATF1ENSG00000123268.4chr12+5117392251174021511896915118979251158074511580905120323851203372-0.159000.002470.032782includedK562U2AF2
MXEATF1ENSG00000123268.4chr12+51173922511740215120323851203372511580745115809051207792512079750.269000.000670.018981includedHepG2DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATF1 is not avaliable on ENCORE database.