AKIRIN2

General Information

Gene Name       : AKIRIN2
Gene ID             : ENSG00000135334.8
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: AKIRIN2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AKIRIN2ENSG00000135334.824.8431.6228.23ENCSR000AEF
HepG2AKIRIN2ENSG00000135334.834.3846.1440.26ENCSR985KAT
K562AKIRIN2ENSG00000135334.828.0325.2926.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AKIRIN2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AKIRIN2 RNA is bound by 25 proteins.  







eCLIP assay for AKIRIN2 is not avaliable on ENCORE database.





25 proteins are bound to AKIRIN2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr68838489288384961-3'-UTR,intron-Distal3.822293.18535HepG2LSM11
chr68838496888385038-3'-UTR,intron-Distal5.6990814.81679K562PUM2
chr68841187188411912-5'-UTR,intron-Distal4.7250224.87892K562RBM15
chr68841166688411744-5'-UTR,intron-Distal3.5850717.94873HepG2DDX3X
chr68841185788411922-5'-UTR,intron-Distal4.234829.86080K562NCBP2
chr68841160388411625-5'-UTR,intron-Distal3.604045.16096HepG2RBM15
chr68841160588411655-5'-UTR,intron-Distal4.493767.63030HepG2DDX3X
chr68841140488411476-5'-UTR,intron-Distal3.165546.84915K562PCBP1
chr68841158188411646-5'-UTR,intron-Distal3.026675.01464K562GEMIN5
chr68841158988411643-5'-UTR,intron-Distal6.6238025.70370K562RBM15
chr68841157188411631-5'-UTR,intron-Distal3.614456.98150K562DDX3X
chr68841187588411919-5'-UTR,intron-Distal4.0125925.51929K562GEMIN5
chr68841139288411462-5'-UTR,CDS,intron-Distal3.576064.79993K562IGF2BP2
chr68841137888411504-5'-UTR,CDS,intron-Distal3.730739.71570HepG2PCBP2
chr68841140588411456-5'-UTR,intron-Distal3.6940020.60802K562RBM15
chr68841138888411467-5'-UTR,CDS,intron-Distal3.307107.54064HepG2DDX59
chr68841155388411605-5'-UTR,intron-Distal4.280529.09300HepG2DDX3X
chr68841173788411787-5'-UTR,intron-Distal3.684276.04640HepG2RBM15
chr68841149588411552-5'-UTR,intron-Distal5.1537125.97479K562RBM15
chr68841167788411747-5'-UTR,intron-Distal3.820363.07735K562EIF3G
chr68841178488411919-5'-UTR,intron-Distal3.2454617.65043K562DDX3X
chr68841131888411369-CDS,intron-Distal,intron-Proximal3.809928.80427HepG2RBM15
chr68841122588411253-CDS,intron-Distal,intron-Proximal5.4801433.09021K562RBM15
chr68838749388387547-CDS,intron-Distal,intron-Proximal3.848785.61068HepG2PRPF8
chr68841125588411318-CDS,intron-Distal,intron-Proximal3.8062311.41257HepG2RBM15
chr68838759388387639-CDS,intron-Distal3.799057.00273K562YBX3
chr68841131488411321-CDS,intron-Distal,intron-Proximal6.7092929.29631K562RBM15
chr68841132188411364-CDS,intron-Distal,intron-Proximal6.5841943.22862K562RBM15
chr68841111688411176-CDS,intron-Distal3.906473.39008HepG2AQR
chr68841132088411385-CDS,intron-Distal,intron-Proximal4.098323.53067K562SRSF1
chr68841125388411282-CDS,intron-Distal,intron-Proximal6.6310555.87606K562RBM15
chr68838554788385598-CDS,intron-Distal,intron-Proximal3.411555.06115HepG2PRPF8
chr68841130988411314-CDS,intron-Distal,intron-Proximal7.3175941.54847K562RBM15
chr68840855088408639-intron-Distal4.443517.94742K562LIN28B
chr68841056188410655-intron-Distal3.9087014.48653K562DDX6
chr68841054988410665-intron-Distal4.3070442.92420K562FAM120A
chr68841036688410408-intron-Distal4.475377.62179K562FAM120A
chr68841059788410664-intron-Distal5.036639.08640HepG2PRPF4
chr68841105188411127-intron-Distal3.6612712.80272HepG2RBM15
chr68841104588411116-intron-Distal4.507525.25202HepG2AQR
chr68841089688410960-intron-Distal4.656615.42395HepG2HNRNPM
chr68840918388409260-intron-Distal4.460115.73042K562TIA1
chr68840934988409416-intron-Distal4.223143.74511K562IGF2BP1
chr68841059288410657-intron-Distal3.478039.22395HepG2FAM120A
chr68840860188408651-intron-Distal3.483954.00685K562TIA1
chr68841100288411051-intron-Distal3.971877.90790HepG2RBM15
chr68841105688411126-intron-Distal4.3912436.96778K562RBM15
chr68841071288410814-intron-Distal3.6522510.28985K562FAM120A
chr68841060988410662-intron-Distal3.565177.04675HepG2PCBP2
chr68841021088410277-intron-Distal,intron-Proximal4.200303.02621K562CPSF6
chr68841058788410657-intron-Distal3.7632312.30090K562HNRNPA1
chr68840709888407166-intron-Distal3.139863.10946HepG2SFPQ
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AKIRIN2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AKIRIN2 is not available on ENCORE database.

  • 79 RBPs can affect the levels of AKIRIN2.  








The Knockdown/knockout RNA-Seq assay for AKIRIN2 is not available on ENCORE database.





79 RBPs can affect the gene expression of AKIRIN2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AKIRIN2ENSG00000135334.81204.25780872.291500.465203.425802.38280HepG2ABCF1
AKIRIN2ENSG00000135334.8257.38570580.55400-1.1735012.1559010.44990HepG2BCLAF1
AKIRIN2ENSG00000135334.8541.131501126.73350-1.0581016.9874015.68660HepG2BOP1
AKIRIN2ENSG00000135334.8505.50020807.06250-0.675008.094106.87390HepG2CALR
AKIRIN2ENSG00000135334.81839.158101270.284900.533802.889401.89270HepG2CCAR1
AKIRIN2ENSG00000135334.8784.429001034.41110-0.399102.769202.08210HepG2CPSF6
AKIRIN2ENSG00000135334.8490.84420614.47300-0.324102.225001.31460HepG2YBX3
AKIRIN2ENSG00000135334.8848.258901010.20890-0.252102.173101.59260HepG2CELF1
AKIRIN2ENSG00000135334.8754.153701086.33010-0.526509.372208.13280HepG2DAZAP1
AKIRIN2ENSG00000135334.8704.88090507.727100.473203.738502.66560HepG2DDX24
AKIRIN2ENSG00000135334.8360.33350497.63020-0.465702.839001.43030HepG2DDX28
AKIRIN2ENSG00000135334.8473.63280763.99760-0.689805.725304.85540HepG2DDX3X
AKIRIN2ENSG00000135334.8804.380101133.74730-0.495104.716803.04660HepG2DDX47
AKIRIN2ENSG00000135334.8458.93370656.94320-0.517503.134202.31900HepG2DDX55
AKIRIN2ENSG00000135334.8444.82300581.95280-0.387702.438501.51750HepG2DHX30
AKIRIN2ENSG00000135334.8952.00760578.093000.719606.974605.58100HepG2EEF2
AKIRIN2ENSG00000135334.8294.23170630.90970-1.1005011.5421010.38230HepG2EIF2S1
AKIRIN2ENSG00000135334.8707.75780469.268400.592704.457603.33190HepG2EIF3D
AKIRIN2ENSG00000135334.8718.29630490.051700.551505.106603.69490HepG2EIF3G
AKIRIN2ENSG00000135334.8529.09190697.26710-0.398202.109101.54840HepG2EIF4A3
AKIRIN2ENSG00000135334.8946.31040678.815300.479202.634601.96200HepG2EIF4B
AKIRIN2ENSG00000135334.8906.697901071.63870-0.241102.228901.46310HepG2EIF4G1
AKIRIN2ENSG00000135334.8827.965701026.57800-0.310202.101501.38510HepG2EIF4G2
AKIRIN2ENSG00000135334.8983.987301307.20450-0.409805.533804.73260HepG2ETF1
AKIRIN2ENSG00000135334.8380.61040546.79530-0.522703.369501.97340HepG2FKBP4
AKIRIN2ENSG00000135334.81030.25630703.399000.550504.624303.74620HepG2FXR1
AKIRIN2ENSG00000135334.8583.15980417.818700.480903.090502.14020HepG2GEMIN5
AKIRIN2ENSG00000135334.8672.444101172.60850-0.802208.421407.34880HepG2GPKOW
AKIRIN2ENSG00000135334.8649.736401119.03980-0.784308.880207.82310HepG2HNRNPLL
AKIRIN2ENSG00000135334.8514.75990687.54020-0.417504.169003.28720HepG2ILF2
AKIRIN2ENSG00000135334.8701.797201141.22510-0.701504.654003.37770HepG2MTPAP
AKIRIN2ENSG00000135334.8456.84000598.65210-0.390002.443201.30390HepG2NAA15
AKIRIN2ENSG00000135334.8410.26700724.28400-0.820007.430506.41730HepG2NCBP2
AKIRIN2ENSG00000135334.8577.91660992.22620-0.779808.990107.69990HepG2NSUN2
AKIRIN2ENSG00000135334.8245.82980645.09150-1.3918017.9350016.14720HepG2PABPC4
AKIRIN2ENSG00000135334.8413.20140600.34350-0.538905.258704.27210HepG2PPIL4
AKIRIN2ENSG00000135334.8548.49450679.18420-0.308302.339201.62110HepG2PRPF4
AKIRIN2ENSG00000135334.8870.93050613.224000.506002.626901.43560HepG2PRPF6
AKIRIN2ENSG00000135334.8698.943101028.24890-0.556906.026105.19070HepG2PUF60
AKIRIN2ENSG00000135334.8806.472501091.49670-0.436607.012506.15740HepG2PUM1
AKIRIN2ENSG00000135334.8597.89840737.45640-0.302702.656702.04900HepG2PUS1
AKIRIN2ENSG00000135334.8471.47000796.40960-0.7563010.076908.98880HepG2QKI
AKIRIN2ENSG00000135334.8203.89720562.92730-1.4651011.070909.72930HepG2RAVER1
AKIRIN2ENSG00000135334.81333.664501096.833000.282002.210001.43370HepG2RBM15
AKIRIN2ENSG00000135334.8916.548201092.57350-0.253402.026501.56470HepG2RBM22
AKIRIN2ENSG00000135334.8476.77600722.76440-0.600205.917304.96440HepG2RBM25
AKIRIN2ENSG00000135334.81028.03850818.333500.329002.936102.38100HepG2NELFE
AKIRIN2ENSG00000135334.8377.79510552.96400-0.549602.708601.77430HepG2RPS10
AKIRIN2ENSG00000135334.8353.03590599.41950-0.7638010.481009.35110HepG2SAFB2
AKIRIN2ENSG00000135334.8336.59200458.27910-0.445202.455101.56750HepG2SERBP1
AKIRIN2ENSG00000135334.81416.12650816.701100.794007.357806.21940HepG2SF3A3
AKIRIN2ENSG00000135334.8551.697301107.64150-1.0055014.9744013.47550HepG2SF3B1
AKIRIN2ENSG00000135334.8563.51050765.59230-0.442104.569903.83820HepG2SF3B4
AKIRIN2ENSG00000135334.8601.35280985.85860-0.7132013.9197012.55510HepG2SLBP
AKIRIN2ENSG00000135334.8991.51740799.086800.311202.733402.26270HepG2SRSF1
AKIRIN2ENSG00000135334.8860.985401015.20410-0.237702.089001.53600HepG2SRSF5
AKIRIN2ENSG00000135334.8518.23020650.07740-0.327002.808802.25420HepG2SRSF9
AKIRIN2ENSG00000135334.8387.09260594.83650-0.619805.115203.85560HepG2SUPT6H
AKIRIN2ENSG00000135334.8390.93120653.96180-0.742305.643404.73050HepG2SUPV3L1
AKIRIN2ENSG00000135334.8639.048801090.65660-0.771209.443208.22020HepG2TARDBP
AKIRIN2ENSG00000135334.8441.78580654.05110-0.566105.572004.91040HepG2TIAL1
AKIRIN2ENSG00000135334.8430.13160659.87830-0.617407.935307.05800HepG2TRIM56
AKIRIN2ENSG00000135334.8668.702801063.20830-0.669005.764104.52710HepG2UBE2L3
AKIRIN2ENSG00000135334.8958.59000724.290100.404204.819303.93880HepG2UPF1
AKIRIN2ENSG00000135334.81196.40520699.272000.7747011.9418010.83300HepG2UTP3
AKIRIN2ENSG00000135334.8293.80510505.73310-0.783505.167203.65780HepG2XPO5
AKIRIN2ENSG00000135334.8527.55750796.57890-0.594508.420907.60050HepG2ZNF622
AKIRIN2ENSG00000135334.81703.053701085.924200.6491014.0321012.85860K562AGGF1
AKIRIN2ENSG00000135334.81536.985401193.233900.365103.146402.08310K562AKAP8
AKIRIN2ENSG00000135334.81669.429501129.945300.563006.017105.02940K562AKAP8L
AKIRIN2ENSG00000135334.81602.52780945.123700.7617010.778609.73280K562AQR
AKIRIN2ENSG00000135334.81565.661301185.569500.401105.043903.76920K562ATP5C1
AKIRIN2ENSG00000135334.8633.18540333.236800.9260010.111507.72120K562CCAR1
AKIRIN2ENSG00000135334.81539.772801012.201400.6051011.101109.89290K562DDX47
AKIRIN2ENSG00000135334.8769.29560633.245300.280702.062901.42610K562EIF2S2
AKIRIN2ENSG00000135334.8697.17480470.703200.566603.464602.65540K562G3BP2
AKIRIN2ENSG00000135334.8275.34580538.90320-0.9688010.390509.29300K562HNRNPC
AKIRIN2ENSG00000135334.81427.734101147.890000.314602.502901.49740K562MAK16
AKIRIN2ENSG00000135334.8657.00890413.537600.667805.396904.34530K562PRPF8
AKIRIN2ENSG00000135334.81863.690901120.653200.733709.804508.83050K562PUS1
AKIRIN2ENSG00000135334.81536.693701091.860100.492906.841605.93660K562RBM15
AKIRIN2ENSG00000135334.8737.626301013.56840-0.458502.494601.71750K562SF3A3
AKIRIN2ENSG00000135334.8631.46140433.084300.543904.196302.85720K562SRSF4
AKIRIN2ENSG00000135334.8319.64680464.74670-0.540003.199002.18750K562TIAL1
AKIRIN2ENSG00000135334.8368.63810493.80770-0.421702.305101.45360K562TRIM56
AKIRIN2ENSG00000135334.8619.04440471.320800.393202.913902.08960K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AKIRIN2 is not available on ENCORE database.





1 RBPs can affect the splicing of AKIRIN2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAKIRIN2ENSG00000135334.8chr6-883855778838564988384789883853258838753588387778-0.066000.000000.00008excludedK562AQR
A3SSAKIRIN2ENSG00000135334.8chr6-8838753588387778883875358838768588391337883915680.126000.000000.00000longerK562AQR
A3SSAKIRIN2ENSG00000135334.8chr6-8839133788391568883913378839148188411167884119270.159000.000000.00000longerK562AQR
MXEAKIRIN2ENSG00000135334.8chr6-8838753588387685883913378839148188384789883853258841116788411927-0.177000.000000.000012includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AKIRIN2 is not avaliable on ENCORE database.