ZNRD1

General Information

Gene Name       : ZNRD1
Gene ID             : ENSG00000066379.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ZNRD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNRD1ENSG00000066379.1419.3736.7628.06ENCSR000AEF
HepG2ZNRD1ENSG00000066379.1461.8650.2256.04ENCSR985KAT
K562ZNRD1ENSG00000066379.1483.2082.1982.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNRD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNRD1 RNA is bound by 8 proteins.  







eCLIP assay for ZNRD1 is not avaliable on ENCORE database.





8 proteins are bound to ZNRD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63003246630032530+3'-UTR,CDS4.177404.23668K562LIN28B
chr63003252130032634+3'-UTR3.548964.71531K562NOLC1
chr63003259630032652+3'-UTR4.003493.45275HepG2LARP4
chr63003253630032594+3'-UTR5.494718.02915HepG2SUB1
chr63002908030029176+5'-UTR,intron-Proximal3.6921312.71397K562DDX3X
chr63002931730029401+CDS3.151087.33020K562YBX3
chr63002969530029789+CDS,intron-Distal3.465473.54552HepG2LARP4
chr63002935630029407+CDS3.712735.06399K562DDX3X
chr63003007730030111+CDS,intron-Proximal4.329025.13745K562YBX3
chr63002971730029795+CDS,intron-Distal,intron-Proximal5.218446.73016HepG2SUB1
chr63002933430029436+CDS3.597205.89423K562SND1
chr63002948730029594+intron-Distal,intron-Proximal5.289836.63358K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNRD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNRD1 is not available on ENCORE database.

  • 84 RBPs can affect the levels of ZNRD1.  








The Knockdown/knockout RNA-Seq assay for ZNRD1 is not available on ENCORE database.





84 RBPs can affect the gene expression of ZNRD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNRD1ENSG00000066379.10248.42860316.85820-0.351001.866001.34860HepG2ACO1
ZNRD1ENSG00000066379.10525.23430778.35820-0.567503.667003.06650HepG2AKAP1
ZNRD1ENSG00000066379.10413.24700644.02430-0.640104.850703.82390HepG2ASCC1
ZNRD1ENSG00000066379.10526.90890697.37990-0.404403.667902.89740HepG2AUH
ZNRD1ENSG00000066379.10304.03630501.99230-0.723403.844902.93670HepG2CNOT7
ZNRD1ENSG00000066379.10358.94490481.60940-0.424102.800502.15410HepG2CELF1
ZNRD1ENSG00000066379.10503.01840745.60460-0.567804.154203.40120HepG2DDX3X
ZNRD1ENSG00000066379.10252.30870615.71810-1.2871014.9733013.66470HepG2EIF2S1
ZNRD1ENSG00000066379.1084.97800161.45570-0.926004.026302.62040HepG2EIF2S2
ZNRD1ENSG00000066379.10205.28940680.43660-1.7288024.6757022.81290HepG2EIF4A3
ZNRD1ENSG00000066379.10347.68500662.50860-0.930206.936605.87740HepG2EIF4B
ZNRD1ENSG00000066379.10342.46410800.66740-1.2253026.8944025.34700HepG2ETF1
ZNRD1ENSG00000066379.10482.94550686.54480-0.507503.369302.60970HepG2FXR1
ZNRD1ENSG00000066379.10337.25530636.86420-0.917108.642607.50250HepG2G3BP1
ZNRD1ENSG00000066379.10446.94210676.12180-0.597204.489003.34250HepG2G3BP2
ZNRD1ENSG00000066379.10322.00030464.72140-0.529302.461401.41110HepG2GRSF1
ZNRD1ENSG00000066379.10335.82780647.35620-0.946809.319208.16210HepG2IGF2BP2
ZNRD1ENSG00000066379.10284.55380607.52540-1.094203.996702.81730HepG2IGF2BP3
ZNRD1ENSG00000066379.10208.11880270.45530-0.378002.063801.41960HepG2ILF2
ZNRD1ENSG00000066379.10408.71730686.78450-0.748806.428705.43950HepG2MAGOH
ZNRD1ENSG00000066379.10375.45370690.62630-0.879307.652006.64270HepG2MATR3
ZNRD1ENSG00000066379.10397.63470706.89270-0.830007.588606.56500HepG2NCBP2
ZNRD1ENSG00000066379.10369.05330629.52630-0.770406.547305.44710HepG2PABPC4
ZNRD1ENSG00000066379.10188.03600262.07940-0.479002.497401.68860HepG2PARN
ZNRD1ENSG00000066379.10415.87250584.59770-0.491304.773204.01120HepG2PCBP1
ZNRD1ENSG00000066379.10349.84440594.82210-0.765708.966808.09470HepG2PTBP1
ZNRD1ENSG00000066379.10350.31970490.11610-0.484502.954902.34230HepG2PUF60
ZNRD1ENSG00000066379.10409.71690520.31250-0.344802.355001.79930HepG2PUM1
ZNRD1ENSG00000066379.10337.15880519.91210-0.624805.015904.12720HepG2PUM2
ZNRD1ENSG00000066379.10243.52270322.73380-0.406302.063701.51320HepG2PUS1
ZNRD1ENSG00000066379.10244.07660644.26640-1.4003024.1627022.58140HepG2QKI
ZNRD1ENSG00000066379.10455.14230669.21350-0.556105.159604.50650HepG2RBM22
ZNRD1ENSG00000066379.10419.22050584.69080-0.480003.650802.88300HepG2RBM25
ZNRD1ENSG00000066379.10320.40540662.00310-1.0469016.5541015.44470HepG2NELFE
ZNRD1ENSG00000066379.10437.85210616.52390-0.493704.726103.94930HepG2RECQL
ZNRD1ENSG00000066379.10295.31100504.19270-0.771705.010603.93410HepG2RPS3A
ZNRD1ENSG00000066379.10396.49540619.33660-0.643407.208506.32570HepG2SF3B4
ZNRD1ENSG00000066379.10109.99140241.52810-1.134806.838205.27740HepG2SMNDC1
ZNRD1ENSG00000066379.10551.74160755.85870-0.454104.996604.37910HepG2SRFBP1
ZNRD1ENSG00000066379.10406.66320646.43290-0.668708.019207.31120HepG2SRSF1
ZNRD1ENSG00000066379.10286.70720483.95730-0.755307.628006.65710HepG2SRSF5
ZNRD1ENSG00000066379.10401.26090525.89000-0.390203.195302.61130HepG2SRSF9
ZNRD1ENSG00000066379.10536.26060656.27590-0.291402.162401.69470HepG2SSB
ZNRD1ENSG00000066379.10435.20360550.35930-0.338702.203901.63740HepG2SUCLG1
ZNRD1ENSG00000066379.10186.51480316.60660-0.763403.800703.02640HepG2SUPV3L1
ZNRD1ENSG00000066379.10432.49640580.98250-0.425803.454102.83920HepG2TAF15
ZNRD1ENSG00000066379.10142.15720212.20950-0.578002.291701.37800HepG2TFIP11
ZNRD1ENSG00000066379.10198.39520259.57450-0.387801.895701.41150HepG2TRIM56
ZNRD1ENSG00000066379.10345.07230478.87590-0.472802.817301.93700HepG2TUFM
ZNRD1ENSG00000066379.10242.51580168.562000.524702.510201.93410HepG2UTP3
ZNRD1ENSG00000066379.101237.06840710.734400.7994017.1571015.86750K562AGGF1
ZNRD1ENSG00000066379.10995.36910781.012100.349802.262701.38600K562AKAP8
ZNRD1ENSG00000066379.101095.59830739.556900.566906.130605.13270K562AKAP8L
ZNRD1ENSG00000066379.101068.51890775.983600.461405.601804.24880K562ATP5C1
ZNRD1ENSG00000066379.10794.917201006.33820-0.340203.411102.34100K562BCLAF1
ZNRD1ENSG00000066379.10237.03040345.06560-0.541803.087901.96240K562CCAR1
ZNRD1ENSG00000066379.10861.31090656.716100.391202.355301.34150K562CPEB4
ZNRD1ENSG00000066379.10274.71190386.28960-0.491802.704701.39100K562DHX30
ZNRD1ENSG00000066379.101030.62970795.781700.373004.005502.92600K562DKC1
ZNRD1ENSG00000066379.10644.352101085.38000-0.7523013.5797012.17380K562EIF2S2
ZNRD1ENSG00000066379.10231.43150350.99580-0.600902.247301.35220K562EIF3A
ZNRD1ENSG00000066379.10368.52280832.85310-1.1763019.0609016.70750K562EIF4A3
ZNRD1ENSG00000066379.10258.47230474.87560-0.877507.169805.22060K562FKBP4
ZNRD1ENSG00000066379.10265.75430589.53310-1.1495010.699609.12900K562G3BP2
ZNRD1ENSG00000066379.10260.67080546.81340-1.0688012.3109011.12660K562HNRNPC
ZNRD1ENSG00000066379.10548.37770335.964000.706804.594703.36870K562HNRNPM
ZNRD1ENSG00000066379.10925.62070553.616500.741407.467406.17740K562HSPD1
ZNRD1ENSG00000066379.101135.02480784.835400.532205.505104.25310K562KIF1C
ZNRD1ENSG00000066379.101185.786601530.41450-0.368103.245402.01880K562MSI2
ZNRD1ENSG00000066379.10917.85100416.602501.139506.939805.14680K562PABPN1
ZNRD1ENSG00000066379.10367.01810722.80330-0.9778010.358708.75670K562PCBP3
ZNRD1ENSG00000066379.10367.49940554.41940-0.593205.037503.95450K562POLR2G
ZNRD1ENSG00000066379.10822.21340463.686000.826306.331805.00470K562PPIG
ZNRD1ENSG00000066379.10903.35960495.284600.866903.998902.12620K562PPP1R8
ZNRD1ENSG00000066379.101077.50900791.725700.444503.468202.62710K562PRPF8
ZNRD1ENSG00000066379.101373.73800733.398200.9053012.9825011.85270K562PUS1
ZNRD1ENSG00000066379.101152.05320714.618700.6889011.012209.85070K562RBM15
ZNRD1ENSG00000066379.10333.33050510.73130-0.615603.301301.70690K562SDAD1
ZNRD1ENSG00000066379.10707.60920380.988100.893103.776202.30450K562SF1
ZNRD1ENSG00000066379.10799.75170464.458900.783903.350901.86280K562SFPQ
ZNRD1ENSG00000066379.10391.61120529.13420-0.434202.956001.31770K562SND1
ZNRD1ENSG00000066379.10425.03880631.06870-0.570205.363703.18480K562SRSF9
ZNRD1ENSG00000066379.10584.54370766.55460-0.391102.210701.30870K562SUPV3L1
ZNRD1ENSG00000066379.10396.91950614.52240-0.630605.384603.12420K562TBRG4
ZNRD1ENSG00000066379.10358.60400525.48900-0.551303.343301.37370K562TRNAU1AP
ZNRD1ENSG00000066379.10357.94830571.47410-0.674904.849903.31730K562U2AF1
ZNRD1ENSG00000066379.10328.50070590.20020-0.8453010.037208.50520K562U2AF2
ZNRD1ENSG00000066379.10500.12100811.30710-0.698006.656604.99830K562UCHL5
ZNRD1ENSG00000066379.101123.41440743.629100.595102.810001.50280K562UTP18
ZNRD1ENSG00000066379.101292.157601742.56360-0.431404.497603.35550K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNRD1 is not available on ENCORE database.





7 RBPs can affect the splicing of ZNRD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNRD1ENSG00000066379.10chr6+300296933002979430029030300294463003000030030110-0.315000.000000.00017excludedHepG2U2AF1
SEZNRD1ENSG00000066379.10chr6+300296933002979430029291300294463003000030030110-0.232000.001950.02476excludedHepG2U2AF2
SEZNRD1ENSG00000066379.10chr6+300296933002979430029291300294463003000030030110-0.074000.000280.00799excludedK562U2AF1
SEZNRD1ENSG00000066379.10chr6+300296743002979430029291300294463003000030030110-0.092000.006130.08468excludedK562U2AF2
A5SSZNRD1ENSG00000066379.10chr6+3002903530029211300290353002917530029291300294570.232000.001410.09953longerHepG2SF3B4
A5SSZNRD1ENSG00000066379.10chr6+3002903530029211300290353002917530029291300294460.089000.000010.00276longerK562PRPF8
A5SSZNRD1ENSG00000066379.10chr6+3002903530029211300290353002917530029291300294460.156000.000740.09304longerHepG2MATR3
A5SSZNRD1ENSG00000066379.10chr6+3002903330029211300290333002916630029291300294460.145000.000690.05769longerK562SF3B4
A5SSZNRD1ENSG00000066379.10chr6+3002903330029211300290333002916630029291300294460.124000.001100.05811longerK562SRSF1
RIZNRD1ENSG00000066379.10chr6+3002903030029446300290303002921130029291300294460.090000.005620.05936includedK562PRPF8
RIZNRD1ENSG00000066379.10chr6+3002903030029446300290303002921130029291300294460.098000.008960.07379includedK562EFTUD2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNRD1 is not avaliable on ENCORE database.