WIPF2

General Information

Gene Name       : WIPF2
Gene ID             : ENSG00000171475.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: WIPF2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WIPF2ENSG00000171475.136.997.357.17ENCSR000AEF
HepG2WIPF2ENSG00000171475.138.4910.249.37ENCSR985KAT
K562WIPF2ENSG00000171475.137.927.227.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WIPF2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • WIPF2 RNA is bound by 22 proteins.  







eCLIP assay for WIPF2 is not avaliable on ENCORE database.





22 proteins are bound to WIPF2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173843566138435754+3'-UTR4.639036.32937K562LIN28B
chr173843673938436766+3'-UTR4.491913.87930K562UPF1
chr173843636938436455+3'-UTR3.806314.66555K562FAM120A
chr173843442638434475+3'-UTR,CDS,intron-Proximal3.470283.32861HepG2U2AF2
chr173843638138436439+3'-UTR3.044668.78952K562UPF1
chr173843788838437982+3'-UTR5.5905310.92669K562PUM2
chr173843868038438755+3'-UTR4.815997.20766K562TARDBP
chr173843667238436716+3'-UTR6.6275828.51276K562LIN28B
chr173843850438438557+3'-UTR4.419595.43878K562TIA1
chr173843511538435212+3'-UTR4.4749517.31691K562UPF1
chr173842127638421336+3'-UTR,CDS,intron-Distal4.060844.24775K562IGF2BP2
chr173843847538438582+3'-UTR3.404078.30291HepG2PTBP1
chr173843004138430078+3'-UTR,CDS,intron-Proximal3.753793.29371HepG2IGF2BP1
chr173843618038436253+3'-UTR4.6854310.92855K562UPF1
chr173843533238435417+3'-UTR3.551075.27637K562FAM120A
chr173843517038435268+3'-UTR3.900577.04160K562FAM120A
chr173843536438435427+3'-UTR3.815896.25570K562UPF1
chr173843546038435541+3'-UTR3.218663.51818HepG2LIN28B
chr173843853538438592+3'-UTR4.786383.91475K562PTBP1
chr173842133538421399+3'-UTR,CDS,intron-Distal,intron-Proximal3.258023.15019HepG2IGF2BP1
chr173843715838437216+3'-UTR4.643579.89033K562UPF1
chr173841884538418898+3'-UTR,CDS,intron-Distal,intron-Proximal4.752895.27053HepG2PPIG
chr173843460338434648+3'-UTR3.852493.19668HepG2UPF1
chr173842113738421237+3'-UTR,CDS,intron-Distal3.661025.64799K562IGF2BP2
chr173843665038436720+3'-UTR5.7268528.05702HepG2LIN28B
chr173843521238435273+3'-UTR5.8876213.64218K562UPF1
chr173843665238436672+3'-UTR3.797733.02060K562LIN28B
chr173843515138435260+3'-UTR3.653827.57190HepG2UPF1
chr173843334838433433+3'-UTR,CDS4.021033.32022K562UCHL5
chr173843520538435269+3'-UTR4.097543.87091K562IGF2BP2
chr173837589438376085+5'-UTR,intron-Distal5.208857.83844HepG2GTF2F1
chr173837603838376108+5'-UTR,intron-Distal4.303084.10323HepG2PRPF4
chr173837593538376057+5'-UTR,intron-Distal3.8148714.68742HepG2FAM120A
chr173837563238375736+5'-UTR3.387073.36945K562ZNF622
chr173837559038375693+5'-UTR3.571676.40214HepG2NCBP2
chr173837559438375724+5'-UTR3.243906.02920HepG2PRPF4
chr173837590538376125+5'-UTR,intron-Distal3.791564.35339HepG2CSTF2T
chr173841689238416960+CDS,intron-Distal,intron-Proximal4.648514.68690HepG2PRPF8
chr173841876938418845+CDS,intron-Distal,intron-Proximal5.015935.27053HepG2PPIG
chr173841682938416921+CDS,intron-Distal,intron-Proximal3.639236.98305HepG2PPIG
chr173839953238399569+intron-Distal7.8992362.04865K562TROVE2
chr173837586838375996+intron-Distal,intron-Proximal5.263576.43928K562GTF2F1
chr173840223738402293+intron-Distal4.330323.18981K562PTBP1
chr173837596538376038+intron-Distal4.515865.59467HepG2PRPF4
chr173838330838383388+intron-Distal3.651376.35518HepG2HNRNPC
chr173837590038375965+intron-Distal3.341584.35063HepG2PRPF4
chr173842424838424299+intron-Distal3.980393.77875HepG2ILF3
chr173839948338399505+intron-Distal4.753915.41497K562TROVE2
chr173837587038375935+intron-Distal4.8922012.02917HepG2FAM120A
chr173839736138397442+intron-Distal4.3739714.13200HepG2QKI
chr173839952538399571+intron-Distal5.593784.06767HepG2TROVE2
chr173839596138396010+intron-Distal3.782463.64484HepG2HNRNPC
chr173837590438376001+intron-Distal4.310005.01722K562CSTF2T
chr173838191838381992+intron-Distal4.164234.25105HepG2HNRNPC
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WIPF2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WIPF2 is not available on ENCORE database.

  • 55 RBPs can affect the levels of WIPF2.  








The Knockdown/knockout RNA-Seq assay for WIPF2 is not available on ENCORE database.





55 RBPs can affect the gene expression of WIPF2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WIPF2ENSG00000171475.91174.488501850.17160-0.655608.080306.95510HepG2CPSF6
WIPF2ENSG00000171475.9543.45510762.17760-0.488003.523102.32270HepG2CSTF2
WIPF2ENSG00000171475.9972.503801296.90730-0.415302.705802.09530HepG2DDX6
WIPF2ENSG00000171475.91205.36660930.182100.373802.671001.78170HepG2EIF3D
WIPF2ENSG00000171475.92296.883501377.606900.737408.160407.06630HepG2EIF4A3
WIPF2ENSG00000171475.91645.560002087.72210-0.343404.846504.09070HepG2ETF1
WIPF2ENSG00000171475.91569.541601251.164500.327002.560901.89200HepG2HNRNPC
WIPF2ENSG00000171475.91005.581301305.91060-0.377002.880102.16690HepG2HNRNPK
WIPF2ENSG00000171475.91649.009701310.666900.331202.244401.62900HepG2IGF2BP2
WIPF2ENSG00000171475.9996.569601398.36860-0.488703.640202.92530HepG2MATR3
WIPF2ENSG00000171475.92221.697501774.720600.324002.602201.87520HepG2NSUN2
WIPF2ENSG00000171475.91811.673101135.897800.673404.088702.99530HepG2PABPC1
WIPF2ENSG00000171475.9964.268901230.28350-0.351504.153203.13950HepG2PARN
WIPF2ENSG00000171475.91088.932801388.77860-0.350904.376003.42690HepG2PRPF4
WIPF2ENSG00000171475.91639.645201397.365800.230602.574102.04340HepG2PTBP1
WIPF2ENSG00000171475.91657.075601448.269100.194202.027401.48110HepG2PUS1
WIPF2ENSG00000171475.91278.812501513.19890-0.242801.895401.36310HepG2QKI
WIPF2ENSG00000171475.92431.546601940.934200.325003.561502.60020HepG2RBM15
WIPF2ENSG00000171475.92167.526201744.946900.312803.795603.21370HepG2RBM22
WIPF2ENSG00000171475.91027.077401320.01470-0.362002.271301.38050HepG2RBM27
WIPF2ENSG00000171475.91769.977701555.062800.186701.812001.35420HepG2NELFE
WIPF2ENSG00000171475.92284.946401844.034100.309202.390401.74800HepG2RPLP0
WIPF2ENSG00000171475.9948.826801242.70140-0.389302.600001.56070HepG2RPS5
WIPF2ENSG00000171475.92981.829901970.848800.5973017.5731016.59760HepG2SRFBP1
WIPF2ENSG00000171475.91802.461301518.438400.247303.036002.54540HepG2SRSF1
WIPF2ENSG00000171475.91516.289901235.384600.295503.923003.28890HepG2SRSF9
WIPF2ENSG00000171475.92418.253901711.155600.4989011.2590010.36010HepG2SSB
WIPF2ENSG00000171475.91161.326001365.00580-0.233101.843401.36850HepG2TAF15
WIPF2ENSG00000171475.91043.932501218.49410-0.223102.047701.54870HepG2TRIM56
WIPF2ENSG00000171475.92279.962701609.489900.502305.344104.48690HepG2U2AF1
WIPF2ENSG00000171475.92836.222201251.060701.180704.335803.08910HepG2U2AF2
WIPF2ENSG00000171475.9509.09140713.39750-0.486803.191602.37780HepG2UCHL5
WIPF2ENSG00000171475.9948.810901589.25360-0.7442019.1506017.63450HepG2UPF1
WIPF2ENSG00000171475.91806.613501534.361700.235502.715302.12290HepG2UTP3
WIPF2ENSG00000171475.9930.367801188.74470-0.353602.004601.37970HepG2XRN2
WIPF2ENSG00000171475.91597.298801370.532600.220802.534201.88640HepG2ZC3H8
WIPF2ENSG00000171475.91967.786001747.874600.170901.997001.51170HepG2ZNF622
WIPF2ENSG00000171475.92386.951201297.922200.8789015.7284014.48460K562AQR
WIPF2ENSG00000171475.91489.490201090.104900.450303.930502.88860K562BOP1
WIPF2ENSG00000171475.91210.842601471.33250-0.281102.697001.83540K562DKC1
WIPF2ENSG00000171475.91087.79060810.965100.423603.720902.77420K562EIF4A3
WIPF2ENSG00000171475.91746.454801179.354700.566306.260604.95760K562FMR1
WIPF2ENSG00000171475.91342.72470999.612900.425603.197502.20980K562FTO
WIPF2ENSG00000171475.91476.165301106.642700.415603.893602.95760K562GPKOW
WIPF2ENSG00000171475.91128.879201418.68670-0.329702.786102.02830K562GRSF1
WIPF2ENSG00000171475.91397.47250701.502600.9942018.4253016.96430K562HNRNPC
WIPF2ENSG00000171475.9873.80130626.528300.479804.184902.74950K562HNRNPF
WIPF2ENSG00000171475.91093.735201504.91130-0.460403.840502.90640K562HSPD1
WIPF2ENSG00000171475.91372.71040944.943300.538603.704002.60520K562KRR1
WIPF2ENSG00000171475.9971.65950679.569900.515704.826102.92270K562LARP7
WIPF2ENSG00000171475.91394.791501080.208100.368603.348302.38300K562METAP2
WIPF2ENSG00000171475.91028.369501259.89720-0.292902.008001.31290K562PPIG
WIPF2ENSG00000171475.92451.692201666.359600.557006.936005.64180K562PUF60
WIPF2ENSG00000171475.9802.31990573.990600.483104.266903.03110K562RCC2
WIPF2ENSG00000171475.91606.217601052.468300.609805.740004.30590K562SF3B1
WIPF2ENSG00000171475.9732.66510544.115900.429102.963001.89180K562SRFBP1
WIPF2ENSG00000171475.91182.08600955.230800.307302.029701.41760K562TARDBP
WIPF2ENSG00000171475.9846.80710604.973500.485103.438202.39020K562TIAL1
WIPF2ENSG00000171475.9841.50000642.834100.388402.757101.81440K562TRIM56
WIPF2ENSG00000171475.9957.36450701.669100.448202.949701.81550K562U2AF1
WIPF2ENSG00000171475.9977.82590724.776900.431904.204603.21760K562U2AF2
WIPF2ENSG00000171475.91101.249701376.17400-0.321504.035403.18290K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WIPF2 is not available on ENCORE database.





6 RBPs can affect the splicing of WIPF2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEWIPF2ENSG00000171475.9chr17+384187763841889338416786384169193842074138421398-0.155000.004230.04049excludedK562AQR
A3SSWIPF2ENSG00000171475.9chr17+3843438538434501384344363843450138433334384334360.138000.014890.07432longerK562AQR
A3SSWIPF2ENSG00000171475.9chr17+3841873338418893384187763841889338416786384169190.076000.009300.04967longerK562AQR
MXEWIPF2ENSG00000171475.9chr17+38420741384213983843004138430251384167863841691938433334384334360.154000.003330.025551includedK562AQR
MXEWIPF2ENSG00000171475.9chr17+38412642384127743841678638416919383755733837574438418776384188930.206000.001920.042251includedHepG2DDX55
MXEWIPF2ENSG00000171475.9chr17+3841877638418893384207413842139838416786384169193843004138430251-0.589000.007270.041652includedHepG2U2AF2
MXEWIPF2ENSG00000171475.9chr17+3841678638416919384207413842139838412642384127743843004138430251-0.189000.000350.008682includedK562HNRNPC
MXEWIPF2ENSG00000171475.9chr17+38412642384127743841678638416919383755733837574438418776384188930.311000.003960.064221includedK562PRPF8
MXEWIPF2ENSG00000171475.9chr17+3841678638416919384207413842139838412642384127743843004138430251-0.105000.000320.012532includedK562FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WIPF2 is not avaliable on ENCORE database.