TTC28

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TTC28	ENSG00000100154.14	3.45	0.90	2.18	ENCSR000AEF
HepG2	TTC28	ENSG00000100154.14	5.77	4.50	5.13	ENCSR985KAT
K562	TTC28	ENSG00000100154.14	2.80	1.97	2.38	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TTC28 is not avaliable on ENCORE database.

Proteins bound to RNA

TTC28 RNA is bound by 31 proteins.

eCLIP assay for TTC28 is not avaliable on ENCORE database.

31 proteins are bound to TTC28 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	28388524	28388579	-	CDS,intron-Distal,intron-Proximal	3.85362	5.35401	HepG2	PRPF8
chr22	28559375	28559412	-	CDS,intron-Distal	3.49134	3.68471	HepG2	BCLAF1
chr22	28559183	28559293	-	CDS,intron-Distal	3.48166	7.66871	HepG2	BCLAF1
chr22	28693708	28693786	-	CDS,intron-Distal	4.41270	3.82843	HepG2	PPIG
chr22	28501333	28501435	-	CDS,intron-Distal	4.38347	8.41475	HepG2	BCLAF1
chr22	28559279	28559414	-	CDS,intron-Distal	3.56005	4.16915	HepG2	HLTF
chr22	28692272	28692317	-	CDS,intron-Distal,intron-Proximal	4.01593	3.49332	HepG2	PPIG
chr22	29025620	29025738	-	CDS,intron-Distal	3.91806	9.08790	HepG2	BCLAF1
chr22	28492179	28492219	-	CDS,intron-Distal	4.53034	4.34038	HepG2	BCLAF1
chr22	28693799	28693840	-	CDS,intron-Distal	3.75407	4.76554	HepG2	BCLAF1
chr22	28497158	28497208	-	CDS,intron-Distal,intron-Proximal	4.61184	5.23259	HepG2	BCLAF1
chr22	28503168	28503230	-	CDS,intron-Distal	4.94951	4.77840	HepG2	EIF3H
chr22	28692191	28692227	-	CDS,intron-Distal,intron-Proximal	4.37282	4.04372	HepG2	BCLAF1
chr22	28503941	28504026	-	CDS,intron-Distal	5.33995	7.16233	HepG2	EIF3H
chr22	28559352	28559431	-	CDS,intron-Distal	4.54172	8.32506	HepG2	EIF3H
chr22	28394578	28394625	-	CDS,intron-Distal	3.91270	3.20743	HepG2	PPIG
chr22	28386772	28386825	-	CDS,intron-Distal,intron-Proximal	3.55688	4.21358	HepG2	U2AF2
chr22	28503065	28503118	-	CDS,intron-Distal	3.13808	3.94979	HepG2	BCLAF1
chr22	29025594	29025673	-	CDS,intron-Distal	5.15319	10.16184	HepG2	GRWD1
chr22	28693719	28693789	-	CDS,intron-Distal	3.77486	6.81385	HepG2	BCLAF1
chr22	28385994	28386065	-	CDS,intron-Distal,intron-Proximal	3.87579	6.32943	HepG2	SF3B4
chr22	28559096	28559180	-	CDS,intron-Distal	3.65330	3.48848	HepG2	FXR2
chr22	28503424	28503470	-	CDS,intron-Distal	3.48505	4.43601	HepG2	EIF3H
chr22	28503918	28503999	-	CDS,intron-Distal	3.06241	3.69127	HepG2	BCLAF1
chr22	28426218	28426309	-	CDS,intron-Distal	3.50989	3.59112	HepG2	PPIG
chr22	28392241	28392311	-	CDS,intron-Distal,intron-Proximal	4.45403	5.28859	HepG2	SF3B4
chr22	29025527	29025594	-	CDS,intron-Distal,intron-Proximal	3.72992	6.46787	HepG2	GRWD1
chr22	29025673	29025726	-	CDS,intron-Distal	3.00930	3.40321	HepG2	GRWD1
chr22	28501373	28501437	-	CDS,intron-Distal	4.76775	3.81516	HepG2	EIF3H
chr22	28504099	28504199	-	CDS,intron-Distal	3.05744	3.85381	HepG2	BCLAF1
chr22	28559168	28559291	-	CDS,intron-Distal	4.57691	7.59222	HepG2	EIF3H
chr22	28702482	28702527	-	CDS,intron-Distal,intron-Proximal	4.84659	5.37137	HepG2	BCLAF1
chr22	28385828	28385896	-	CDS,intron-Distal,intron-Proximal	3.87031	3.86479	HepG2	PRPF8
chr22	29018296	29018349	-	intron-Distal	3.84713	10.28524	HepG2	SUGP2
chr22	28888378	28888478	-	intron-Distal	3.25044	3.39827	HepG2	MATR3
chr22	28906932	28906985	-	intron-Distal	3.67444	4.10380	HepG2	MATR3
chr22	28920407	28920437	-	intron-Distal	3.08226	5.56519	HepG2	HNRNPC
chr22	28926860	28926916	-	intron-Distal	5.52992	10.04361	HepG2	MATR3
chr22	28729770	28729819	-	intron-Distal	3.92756	3.77017	HepG2	CSTF2
chr22	28906069	28906120	-	intron-Distal	4.82386	6.43853	HepG2	MATR3
chr22	28948714	28948754	-	intron-Distal	4.33850	3.89085	K562	EXOSC5
chr22	28952685	28952859	-	intron-Distal	3.09084	5.64794	HepG2	SAFB
chr22	28466642	28466653	-	intron-Distal	4.88959	7.82139	HepG2	GRSF1
chr22	28902307	28902358	-	intron-Distal	3.05841	4.23271	HepG2	HNRNPM
chr22	28846317	28846400	-	intron-Distal	3.44645	6.55984	HepG2	SUGP2
chr22	28965252	28965310	-	intron-Distal	4.76499	7.14375	HepG2	SUGP2
chr22	28902615	28902660	-	intron-Distal	3.50618	5.08575	HepG2	SUGP2
chr22	28845921	28845965	-	intron-Distal	3.61496	7.91745	HepG2	SUGP2
chr22	28925629	28925696	-	intron-Distal	4.68679	9.41947	HepG2	HNRNPM
chr22	28967291	28967424	-	intron-Distal	3.15387	4.50064	HepG2	SFPQ
chr22	28794303	28794374	-	intron-Distal	4.05707	3.53723	HepG2	PTBP1
chr22	28869916	28869938	-	intron-Distal	3.28325	3.59523	HepG2	SUGP2
chr22	28466653	28466667	-	intron-Distal	4.88959	7.82139	HepG2	GRSF1
chr22	29005764	29005810	-	intron-Distal	5.16795	10.02324	HepG2	SUGP2
chr22	28844516	28844566	-	intron-Distal	4.47251	5.31529	HepG2	SUGP2
chr22	28626856	28626948	-	intron-Distal	3.83139	4.01234	HepG2	HNRNPL
chr22	28749016	28749142	-	intron-Distal	3.97210	3.41738	HepG2	PTBP1
chr22	28669483	28669520	-	intron-Distal	3.83998	3.29248	HepG2	SUGP2
chr22	29009130	29009177	-	intron-Distal	3.28400	3.72876	HepG2	MATR3
chr22	29004899	29004954	-	intron-Distal	3.25954	5.42643	HepG2	MATR3
chr22	28997702	28997789	-	intron-Distal	3.81694	5.90050	K562	TARDBP
chr22	28948084	28948127	-	intron-Distal	4.66798	5.12361	K562	EXOSC5
chr22	28868536	28868614	-	intron-Distal	5.04013	15.59740	HepG2	HNRNPL
chr22	28903530	28903571	-	intron-Distal	4.39257	4.78128	HepG2	SUGP2
chr22	29005522	29005570	-	intron-Distal	5.13716	9.75642	HepG2	SUGP2
chr22	28918636	28918666	-	intron-Distal	4.07652	3.80778	HepG2	QKI
chr22	28943148	28943252	-	intron-Distal	4.19941	11.26881	HepG2	HNRNPL
chr22	28940384	28940476	-	intron-Distal	3.11496	4.40773	HepG2	SUGP2
chr22	28889587	28889629	-	intron-Distal	4.06250	3.54208	HepG2	SUGP2
chr22	29018198	29018253	-	intron-Distal	3.83072	15.39621	HepG2	SUGP2
chr22	28891511	28891564	-	intron-Distal	3.50698	4.33009	HepG2	SUGP2
chr22	28841126	28841193	-	intron-Distal	4.38778	12.44645	HepG2	HNRNPM
chr22	29016700	29016741	-	intron-Distal	3.24366	7.69812	HepG2	SUGP2
chr22	28611586	28611682	-	intron-Distal	3.59002	6.66746	HepG2	HNRNPL
chr22	28858605	28858675	-	intron-Distal	3.24503	3.35103	HepG2	QKI
chr22	28906056	28906115	-	intron-Distal	4.85695	7.39957	HepG2	SUGP2
chr22	29006256	29006303	-	intron-Distal	3.54292	3.84798	HepG2	MATR3
chr22	29016705	29016745	-	intron-Distal	4.35795	3.96879	HepG2	MATR3
chr22	28906042	28906091	-	intron-Distal	4.64337	5.72853	HepG2	HNRNPM
chr22	28870585	28870657	-	intron-Distal	3.39893	4.23155	HepG2	MATR3
chr22	28926045	28926144	-	intron-Distal	3.28325	8.84312	HepG2	SUGP2
chr22	28764042	28764093	-	intron-Distal	3.98946	3.24322	HepG2	MATR3
chr22	28803364	28803405	-	intron-Distal	4.96392	8.25763	HepG2	RBFOX2
chr22	29021465	29021522	-	intron-Distal	3.95079	3.24603	K562	KHSRP
chr22	28683509	28683691	-	intron-Distal	4.68858	5.41368	HepG2	PTBP1
chr22	28797070	28797159	-	intron-Distal	3.50040	8.57571	HepG2	PTBP1
chr22	28907764	28907811	-	intron-Distal	4.27228	3.30687	K562	EXOSC5
chr22	29021112	29021238	-	intron-Distal	3.88813	6.29905	HepG2	MATR3
chr22	28935631	28935702	-	intron-Distal	3.04086	4.00631	HepG2	PTBP1
chr22	28803330	28803364	-	intron-Distal	5.03933	7.98567	HepG2	RBFOX2
chr22	28797011	28797070	-	intron-Distal	4.48698	9.78100	HepG2	PTBP1
chr22	28866962	28867021	-	intron-Distal	4.04649	10.73282	HepG2	SUGP2
chr22	29005007	29005036	-	intron-Distal	4.21209	4.10336	HepG2	SUGP2
chr22	28847971	28848035	-	intron-Distal	4.06648	7.20426	HepG2	HNRNPL
chr22	29020656	29020788	-	intron-Distal	4.80143	6.94732	K562	KHSRP
chr22	28943064	28943223	-	intron-Distal	3.45635	5.26345	K562	HNRNPL
chr22	28984698	28984769	-	intron-Distal	3.85666	5.72132	HepG2	HNRNPM
chr22	28918844	28918890	-	intron-Distal	3.96044	5.00478	HepG2	PCBP2
chr22	28764031	28764088	-	intron-Distal	4.05952	3.84389	HepG2	SUGP2
chr22	28919276	28919403	-	intron-Distal	3.85056	3.06150	K562	KHSRP
chr22	28845620	28845659	-	intron-Distal	3.57719	5.08575	HepG2	SUGP2
chr22	28907161	28907201	-	intron-Distal	3.99892	3.34098	HepG2	HNRNPM
chr22	28939103	28939120	-	intron-Distal	3.64630	6.10762	HepG2	PTBP1
chr22	29009700	29009753	-	intron-Distal	3.32570	3.91859	HepG2	SUGP2
chr22	28846003	28846076	-	intron-Distal	3.66618	10.91545	HepG2	SUGP2
chr22	28979589	28979702	-	intron-Distal	3.89989	6.58004	HepG2	U2AF2
chr22	28762979	28763028	-	intron-Distal	3.66473	5.32485	HepG2	SUGP2
chr22	28870421	28870453	-	intron-Distal	3.47753	4.08528	HepG2	SUGP2
chr22	28803378	28803471	-	intron-Distal	3.85261	3.22972	K562	TARDBP
chr22	29025457	29025529	-	intron-Distal,intron-Proximal	3.58094	3.04397	HepG2	TIA1
chr22	28757205	28757280	-	intron-Distal	3.29625	3.69184	HepG2	SUGP2
chr22	28918033	28918155	-	intron-Distal	4.78344	7.75161	HepG2	QKI
chr22	29006940	29007029	-	intron-Distal	3.79510	6.41195	HepG2	PTBP1
chr22	29018272	29018353	-	intron-Distal	3.06638	3.04298	HepG2	HNRNPM
chr22	28807445	28807514	-	intron-Distal	3.15435	3.46325	HepG2	SUGP2
chr22	29016253	29016342	-	intron-Distal	3.02396	9.53002	HepG2	HNRNPC
chr22	28896590	28896745	-	intron-Distal	4.48432	5.41654	K562	KHSRP
chr22	28934971	28935041	-	intron-Distal	4.58868	5.04227	HepG2	HNRNPL
chr22	28936930	28936973	-	intron-Distal	3.63381	5.30446	HepG2	SUGP2
chr22	29024853	29024889	-	intron-Distal	3.50155	6.10762	HepG2	PTBP1
chr22	28939452	28939499	-	intron-Distal	4.60060	6.59655	K562	PTBP1
chr22	28939457	28939500	-	intron-Distal	3.67825	4.53157	HepG2	MATR3
chr22	28890734	28890820	-	intron-Distal	3.14582	6.83989	HepG2	U2AF2
chr22	29007142	29007210	-	intron-Distal	5.08226	8.16055	HepG2	SUGP2
chr22	28940252	28940345	-	intron-Distal	4.33882	4.96658	K562	KHSRP
chr22	28844884	28844933	-	intron-Distal	4.69624	6.36848	HepG2	SUGP2
chr22	29024866	29024949	-	intron-Distal	3.39841	4.41421	K562	PTBP1
chr22	28851151	28851240	-	intron-Distal	3.12881	3.06005	HepG2	QKI
chr22	29017953	29018012	-	intron-Distal	4.07354	16.41301	HepG2	SUGP2
chr22	28866375	28866483	-	intron-Distal	3.00341	7.14244	HepG2	SUGP2
chr22	28846705	28846760	-	intron-Distal	3.12350	4.88763	HepG2	SUGP2
chr22	28905672	28905705	-	intron-Distal	3.57975	4.61322	HepG2	MATR3
chr22	28871225	28871344	-	intron-Distal	3.31787	13.71883	HepG2	SUGP2
chr22	28999393	28999481	-	intron-Distal	3.06287	4.37857	HepG2	ILF3
chr22	28584706	28584772	-	intron-Distal	4.12229	3.84389	HepG2	SUGP2
chr22	28890311	28890331	-	intron-Distal	3.80902	3.16028	HepG2	SUGP2
chr22	28983284	28983355	-	intron-Distal	3.15232	3.80809	HepG2	ILF3
chr22	28961143	28961221	-	intron-Distal	4.71697	5.68226	HepG2	HNRNPM
chr22	28870738	28870774	-	intron-Distal	4.51669	4.66737	HepG2	MATR3
chr22	28856565	28856626	-	intron-Distal	5.19482	18.07577	HepG2	PTBP1
chr22	28905141	28905183	-	intron-Distal	4.82573	5.76685	K562	EXOSC5
chr22	29015393	29015452	-	intron-Distal	3.21129	4.40773	HepG2	SUGP2
chr22	28943097	28943148	-	intron-Distal	4.06836	7.41599	HepG2	HNRNPL
chr22	28939294	28939419	-	intron-Distal	4.20955	4.47026	K562	MATR3
chr22	28906575	28906625	-	intron-Distal	3.33263	3.11000	HepG2	HNRNPM
chr22	28948069	28948128	-	intron-Distal	3.75457	3.66782	HepG2	HNRNPM
chr22	28905339	28905401	-	intron-Distal	3.61892	6.97519	HepG2	MATR3
chr22	28845666	28845732	-	intron-Distal	4.39163	10.58275	HepG2	SUGP2
chr22	28848624	28848696	-	intron-Distal	4.28083	4.07750	HepG2	HNRNPK
chr22	28982555	28982608	-	intron-Distal	3.17962	3.10639	HepG2	PTBP1
chr22	28896584	28896709	-	intron-Distal	3.91611	9.78094	HepG2	KHSRP
chr22	28866927	28867026	-	intron-Distal	3.71938	4.63118	HepG2	HNRNPM
chr22	28867544	28867605	-	intron-Distal	3.23836	3.39857	HepG2	HNRNPM
chr22	28947369	28947444	-	intron-Distal	4.58121	5.44433	K562	EXOSC5
chr22	28844712	28844802	-	intron-Distal	4.49059	13.41910	HepG2	SUGP2
chr22	28870332	28870398	-	intron-Distal	3.32073	7.42681	HepG2	SUGP2
chr22	28965102	28965143	-	intron-Distal	3.78978	6.23177	HepG2	SUGP2
chr22	29011025	29011077	-	intron-Distal	4.06845	3.59909	K562	EXOSC5
chr22	28888550	28888615	-	intron-Distal	4.04218	8.18586	HepG2	SUGP2
chr22	28668783	28668821	-	intron-Distal	3.83998	3.29248	HepG2	SUGP2
chr22	28992153	28992238	-	intron-Distal	3.52727	6.52138	HepG2	QKI
chr22	28777499	28777546	-	intron-Distal	3.57832	7.06840	HepG2	QKI
chr22	28807701	28807744	-	intron-Distal	4.19993	4.28663	HepG2	SUGP2
chr22	28868757	28868799	-	intron-Distal	4.45463	5.11328	HepG2	SUGP2
chr22	28925650	28925696	-	intron-Distal	3.49973	4.36650	HepG2	SUGP2
chr22	28557650	28557756	-	intron-Distal	3.46741	6.31222	HepG2	PTBP1
chr22	28982550	28982615	-	intron-Distal	3.74354	6.01170	HepG2	MATR3
chr22	29004833	29004948	-	intron-Distal	3.43731	12.65076	HepG2	SUGP2
chr22	29021384	29021445	-	intron-Distal	3.56841	4.35402	HepG2	SUGP2
chr22	28557611	28557650	-	intron-Distal	4.49576	4.74221	HepG2	PTBP1
chr22	28939290	28939381	-	intron-Distal	4.72385	29.74615	HepG2	PTBP1
chr22	29016269	29016341	-	intron-Distal	3.13629	9.13422	HepG2	MATR3
chr22	29006521	29006570	-	intron-Distal	3.43586	3.68481	HepG2	HNRNPM
chr22	28942578	28942626	-	intron-Distal	3.92021	3.39864	HepG2	SUGP2
chr22	29020456	29020488	-	intron-Distal	3.23932	3.46325	HepG2	SUGP2
chr22	29006533	29006569	-	intron-Distal	3.88359	7.03506	HepG2	SUGP2
chr22	29015923	29015982	-	intron-Distal	3.13850	7.22569	HepG2	SUGP2
chr22	28844633	28844679	-	intron-Distal	4.16987	8.40280	HepG2	SUGP2
chr22	28926853	28926915	-	intron-Distal	4.09868	12.24524	HepG2	SUGP2
chr22	28672391	28672452	-	intron-Distal	4.31846	3.50357	HepG2	QKI
chr22	28965222	28965324	-	intron-Distal	4.17389	11.33090	HepG2	HNRNPM
chr22	28891189	28891265	-	intron-Distal	3.66473	7.51551	HepG2	SUGP2
chr22	29006952	29006996	-	intron-Distal	4.23932	4.10336	HepG2	SUGP2
chr22	28964565	28964651	-	intron-Distal	4.49892	5.37406	HepG2	HNRNPM
chr22	28846877	28846925	-	intron-Distal	3.48783	3.12080	HepG2	XPO5
chr22	28903898	28903937	-	intron-Distal	4.78374	5.02084	HepG2	HNRNPM
chr22	29018106	29018158	-	intron-Distal	3.91477	9.08489	HepG2	SUGP2
chr22	29011029	29011077	-	intron-Distal	3.47251	4.57452	HepG2	SUGP2
chr22	28890878	28890924	-	intron-Distal	3.34602	6.07779	HepG2	SUGP2
chr22	28937441	28937495	-	intron-Distal	4.67089	3.27946	HepG2	HNRNPM
chr22	28918833	28918910	-	intron-Distal	4.58072	16.72652	HepG2	QKI
chr22	28889675	28889731	-	intron-Distal	4.03450	6.25619	HepG2	SUGP2
chr22	29019589	29019643	-	intron-Distal	3.61127	4.14346	HepG2	SUGP2
chr22	28989410	28989473	-	intron-Distal	4.41921	8.08956	HepG2	PCBP2
chr22	28964451	28964497	-	intron-Distal	3.35473	4.70712	HepG2	MATR3
chr22	29006761	29006808	-	intron-Distal	3.33998	3.35050	HepG2	SUGP2
chr22	29020668	29020794	-	intron-Distal	3.39410	4.83226	HepG2	HNRNPM
chr22	28616044	28616154	-	intron-Distal	4.83380	6.23638	HepG2	QKI
chr22	28870811	28870859	-	intron-Distal	3.52179	6.79980	HepG2	SUGP2
chr22	28963666	28963726	-	intron-Distal	3.37096	6.05394	HepG2	SUGP2
chr22	29017947	29017994	-	intron-Distal	3.04015	5.77148	HepG2	HNRNPM
chr22	28903185	28903220	-	intron-Distal	3.62229	4.08528	HepG2	SUGP2
chr22	28939109	28939146	-	intron-Distal	4.52460	3.92866	K562	PTBP1
chr22	28996343	28996356	-	intron-Distal	4.15213	3.43813	HepG2	HNRNPC
chr22	28917885	28917979	-	intron-Distal	3.27113	7.08259	HepG2	SUGP2
chr22	28844959	28845010	-	intron-Distal	3.36187	7.56541	HepG2	SUGP2
chr22	28890722	28890821	-	intron-Distal	3.93807	18.18302	HepG2	PTBP1
chr22	28897292	28897368	-	intron-Distal	4.17510	15.20048	HepG2	HNRNPL
chr22	29025447	29025531	-	intron-Distal,intron-Proximal	3.96739	7.22547	HepG2	TIAL1
chr22	28890724	28890816	-	intron-Distal	3.87687	5.93532	K562	PTBP1
chr22	28845213	28845238	-	intron-Distal	3.23932	3.84025	HepG2	SUGP2
chr22	28868641	28868723	-	intron-Distal	4.01891	5.54651	HepG2	SUGP2
chr22	28964252	28964327	-	intron-Distal	3.47419	7.20487	HepG2	SUGP2
chr22	28937098	28937154	-	intron-Distal	3.70111	3.68481	HepG2	HNRNPM
chr22	28910152	28910213	-	intron-Distal	4.19158	3.50357	HepG2	QKI
chr22	28903408	28903462	-	intron-Distal	3.62303	6.21102	HepG2	MATR3
chr22	29008365	29008410	-	intron-Distal	4.13850	4.03915	HepG2	SUGP2
chr22	29004838	29004899	-	intron-Distal	3.68580	6.01170	HepG2	MATR3
chr22	28870073	28870105	-	intron-Distal	3.65826	4.84410	HepG2	SUGP2
chr22	29006272	29006318	-	intron-Distal	4.56737	5.72853	HepG2	HNRNPM
chr22	28668975	28669045	-	intron-Distal	3.18059	4.40773	HepG2	SUGP2
chr22	29004757	29004833	-	intron-Distal	4.58837	12.59187	HepG2	SUGP2
chr22	28965255	28965307	-	intron-Distal	4.50773	4.60209	HepG2	MATR3
chr22	28869824	28869884	-	intron-Distal	3.54292	3.39827	HepG2	MATR3
chr22	28907758	28907811	-	intron-Distal	3.15631	6.35394	HepG2	SUGP2
chr22	28903525	28903574	-	intron-Distal	5.06824	7.35807	HepG2	MATR3
chr22	28793305	28793481	-	intron-Distal	5.05913	6.30261	HepG2	SFPQ
chr22	28845842	28845921	-	intron-Distal	4.15305	10.98367	HepG2	SUGP2
chr22	28939120	28939144	-	intron-Distal	3.40109	7.04020	HepG2	PTBP1
chr22	28939381	28939498	-	intron-Distal	5.78606	12.34197	HepG2	PCBP2
chr22	28933865	28933952	-	intron-Distal	4.60538	6.78010	HepG2	ILF3
chr22	28868750	28868833	-	intron-Distal	4.01983	6.92280	HepG2	HNRNPM
chr22	29020636	29020687	-	intron-Distal	3.72878	5.79523	HepG2	SUGP2
chr22	28903304	28903347	-	intron-Distal	3.34602	5.36060	HepG2	SUGP2
chr22	29005066	29005113	-	intron-Distal	4.27326	3.78432	HepG2	MATR3
chr22	28963588	28963639	-	intron-Distal	4.26321	4.32882	HepG2	MATR3
chr22	28973522	28973603	-	intron-Distal	3.78370	3.43228	K562	SAFB2
chr22	28906192	28906241	-	intron-Distal	4.11615	3.97018	HepG2	HNRNPM
chr22	29005146	29005187	-	intron-Distal	3.35200	3.59523	HepG2	SUGP2
chr22	28888349	28888397	-	intron-Distal	3.02908	4.63410	HepG2	SUGP2
chr22	28865249	28865373	-	intron-Distal	3.84073	7.57837	HepG2	MATR3
chr22	28922529	28922587	-	intron-Distal	4.37035	4.10387	HepG2	SFPQ
chr22	28903279	28903357	-	intron-Distal	3.35133	3.30286	HepG2	PTBP1
chr22	28867234	28867292	-	intron-Distal	3.11127	6.36326	HepG2	SUGP2
chr22	28937452	28937491	-	intron-Distal	4.78652	5.31529	HepG2	SUGP2
chr22	28891204	28891275	-	intron-Distal	4.84676	5.01910	HepG2	MATR3
chr22	28870726	28870808	-	intron-Distal	3.64425	11.00507	HepG2	SUGP2
chr22	28939290	28939385	-	intron-Distal	6.37096	18.30079	K562	PTBP1
chr22	28891027	28891067	-	intron-Distal	3.48087	5.06177	HepG2	SUGP2
chr22	28963682	28963774	-	intron-Distal	3.38576	4.83120	HepG2	MATR3
chr22	28982506	28982550	-	intron-Distal	3.43173	3.68462	HepG2	MATR3
chr22	28920437	28920454	-	intron-Distal	3.10913	5.77876	HepG2	HNRNPC
chr22	28903895	28903945	-	intron-Distal	3.10084	3.63322	HepG2	MATR3
chr22	28807658	28807701	-	intron-Distal	3.21450	3.91859	HepG2	SUGP2
chr22	28937313	28937440	-	intron-Distal	3.86750	6.91197	HepG2	MATR3
chr22	28777401	28777499	-	intron-Distal	4.56006	10.58655	HepG2	QKI
chr22	28765082	28765172	-	intron-Distal	4.00864	3.07980	HepG2	HNRNPM
chr22	29019503	29019551	-	intron-Distal	4.21344	4.31720	HepG2	MATR3
chr22	28659682	28659816	-	intron-Distal	3.25051	5.94773	HepG2	QKI
chr22	28557808	28557855	-	intron-Distal	3.93510	3.41738	HepG2	PTBP1
chr22	28968915	28968975	-	intron-Distal	3.19919	6.25191	HepG2	HNRNPC
chr22	28840702	28840762	-	intron-Distal	3.15435	3.69184	HepG2	SUGP2
chr22	28937332	28937381	-	intron-Distal	3.30006	5.82512	HepG2	SUGP2
chr22	28965324	28965376	-	intron-Distal	3.53084	3.90822	HepG2	HNRNPM
chr22	28891779	28891822	-	intron-Distal	3.20861	3.12686	HepG2	SFPQ
chr22	28763800	28763851	-	intron-Distal	3.95377	3.39864	HepG2	SUGP2
chr22	28925453	28925494	-	intron-Distal	4.19698	3.96879	HepG2	MATR3
chr22	29024889	29024947	-	intron-Distal	4.24706	17.41639	HepG2	PTBP1
chr22	29022900	29022948	-	intron-Distal	5.21482	8.82480	HepG2	PTBP1
chr22	28906056	28906122	-	intron-Distal	4.17754	3.01456	K562	EXOSC5
chr22	28975918	28975966	-	intron-Distal	3.83166	3.61897	HepG2	HNRNPC
chr22	29008818	29008920	-	intron-Distal	4.93373	6.08205	HepG2	MATR3
chr22	28937377	28937438	-	intron-Distal	3.83571	3.68481	HepG2	HNRNPM
chr22	28870332	28870403	-	intron-Distal	4.18931	5.95721	HepG2	MATR3
chr22	29010160	29010273	-	intron-Distal	4.24279	7.54890	HepG2	SUGP2
chr22	28984769	28984831	-	intron-Distal	3.71213	4.94813	HepG2	HNRNPM
chr22	28870482	28870522	-	intron-Distal	4.89819	7.90787	HepG2	SUGP2
chr22	28902623	28902682	-	intron-Distal	3.68580	4.28254	HepG2	MATR3
chr22	29020658	29020744	-	intron-Distal	3.42277	6.21102	HepG2	MATR3
chr22	29009126	29009171	-	intron-Distal	3.69993	5.06177	HepG2	SUGP2
chr22	28959958	28960032	-	intron-Distal	3.54958	3.90141	HepG2	SFPQ
chr22	28989411	28989530	-	intron-Distal	4.52567	3.09122	HepG2	PTBP1
chr22	28964414	28964498	-	intron-Distal	3.14805	7.28622	HepG2	SUGP2
chr22	28935065	28935126	-	intron-Distal	3.88648	7.14963	HepG2	HNRNPL
chr22	29006175	29006272	-	intron-Distal	4.30807	6.64193	HepG2	HNRNPM
chr22	28845457	28845532	-	intron-Distal	5.22937	10.09231	HepG2	SUGP2
chr22	28939295	28939383	-	intron-Distal	3.69809	7.85325	HepG2	MATR3
chr22	28890732	28890810	-	intron-Distal	3.05662	5.29833	HepG2	PCBP2
chr22	29018508	29018536	-	intron-Distal	4.15998	3.96879	HepG2	MATR3
chr22	28903180	28903264	-	intron-Distal	3.63321	8.61515	HepG2	MATR3
chr22	28905309	28905393	-	intron-Distal	4.35289	3.86368	HepG2	HNRNPM
chr22	28766636	28766705	-	intron-Distal	4.76459	6.08961	HepG2	PTBP1
chr22	29018213	29018254	-	intron-Distal	4.31508	7.32721	HepG2	MATR3
chr22	28845924	28845976	-	intron-Distal	4.69975	5.72657	HepG2	MATR3
chr22	28870227	28870282	-	intron-Distal	3.71610	7.27760	HepG2	SUGP2
chr22	28962131	28962264	-	intron-Distal	5.35539	7.51573	HepG2	HNRNPM
chr22	28866905	28866996	-	intron-Distal	3.60924	7.48827	HepG2	MATR3
chr22	28669696	28669805	-	intron-Distal	3.69993	5.06177	HepG2	SUGP2
chr22	28867109	28867135	-	intron-Distal	3.17369	3.35050	HepG2	SUGP2
chr22	29016434	29016484	-	intron-Distal	3.83263	4.94813	HepG2	HNRNPM
chr22	28925585	28925694	-	intron-Distal	4.44945	3.28572	K562	HNRNPM
chr22	29006220	29006303	-	intron-Distal	4.20006	13.27306	HepG2	SUGP2
chr22	28907758	28907811	-	intron-Distal	4.89473	5.72657	HepG2	MATR3
chr22	28621306	28621349	-	intron-Distal	3.24632	3.00914	HepG2	PTBP1
chr22	28901434	28901490	-	intron-Distal	4.72421	5.72657	HepG2	MATR3
chr22	28856626	28856673	-	intron-Distal	4.56239	5.07733	HepG2	PTBP1
chr22	28924450	28924553	-	intron-Distal	3.48328	4.75229	HepG2	ILF3
chr22	29007822	29007924	-	intron-Distal	3.64264	8.49452	HepG2	SUGP2
chr22	29008786	29008835	-	intron-Distal	4.64382	6.58366	HepG2	SUGP2
chr22	29009127	29009171	-	intron-Distal	4.61477	5.44508	K562	EXOSC5
chr22	29025108	29025154	-	intron-Distal	3.39264	3.55754	HepG2	U2AF2
chr22	28866672	28866711	-	intron-Distal	3.39257	4.08528	HepG2	SUGP2
chr22	29005056	29005109	-	intron-Distal	5.07573	7.14375	HepG2	SUGP2
chr22	28902316	28902374	-	intron-Distal	3.78870	6.02668	HepG2	SUGP2
chr22	28888742	28888831	-	intron-Distal	3.79911	8.23930	HepG2	SUGP2
chr22	28868486	28868536	-	intron-Distal	5.45278	9.72485	HepG2	HNRNPL
chr22	28937440	28937506	-	intron-Distal	3.07794	3.63322	HepG2	MATR3
chr22	28916966	28917049	-	intron-Distal	3.74613	5.20418	HepG2	HNRNPC
chr22	28927503	28927561	-	intron-Distal	4.18298	3.78432	HepG2	MATR3
chr22	28939450	28939499	-	intron-Distal	4.61480	20.71264	HepG2	PTBP1
chr22	29010163	29010247	-	intron-Distal	5.44266	10.97370	HepG2	MATR3
chr22	29017496	29017534	-	intron-Distal	3.64374	4.61905	HepG2	MATR3
chr22	28866901	28866962	-	intron-Distal	3.05354	9.06233	HepG2	SUGP2
chr22	29008369	29008410	-	intron-Distal	3.98946	3.24322	HepG2	MATR3
chr22	28890726	28890815	-	intron-Distal	3.05202	5.64612	HepG2	MATR3
chr22	28868748	28868836	-	intron-Distal	4.14523	3.27829	HepG2	MATR3
chr22	28866782	28866870	-	intron-Distal	5.01222	7.51321	HepG2	MATR3
chr22	28847915	28847971	-	intron-Distal	4.48293	4.24565	HepG2	HNRNPL
chr22	29004847	29004944	-	intron-Distal	3.63261	3.39857	HepG2	HNRNPM
chr22	28906740	28906799	-	intron-Distal	3.89049	6.71970	HepG2	MATR3
chr22	29017950	29018049	-	intron-Distal	3.74006	11.72767	HepG2	MATR3
chr22	28992436	28992484	-	intron-Distal	5.31651	9.03229	HepG2	QKI
chr22	28963982	28964035	-	intron-Distal	4.05361	3.12827	HepG2	U2AF2
chr22	28870549	28870639	-	intron-Distal	5.11508	17.80458	HepG2	SUGP2
chr22	28763795	28763855	-	intron-Distal	3.43763	3.39857	HepG2	HNRNPM
chr22	28871253	28871353	-	intron-Distal	3.48367	9.02352	HepG2	MATR3
chr22	28917539	28917608	-	intron-Distal	3.05687	4.86332	HepG2	SUGP2
chr22	28926088	28926157	-	intron-Distal	5.65852	11.49985	HepG2	MATR3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for TTC28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TTC28 is not available on ENCORE database.
75 RBPs can affect the levels of TTC28.

The Knockdown/knockout RNA-Seq assay for TTC28 is not available on ENCORE database.

75 RBPs can affect the gene expression of TTC28 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TTC28	ENSG00000100154.10	688.84960	1089.62290	-0.66160	5.41960	4.70450	HepG2	AKAP1
TTC28	ENSG00000100154.10	1420.31260	1200.91210	0.24200	2.18950	1.56580	HepG2	AUH
TTC28	ENSG00000100154.10	743.15080	1001.75840	-0.43080	1.95000	1.31280	HepG2	CNOT7
TTC28	ENSG00000100154.10	1546.68730	1042.92170	0.56850	6.11880	5.13010	HepG2	CPSF6
TTC28	ENSG00000100154.10	752.45840	1043.69540	-0.47200	3.43960	2.75150	HepG2	DDX3X
TTC28	ENSG00000100154.10	1816.03540	1184.31770	0.61660	3.34300	2.26980	HepG2	DDX59
TTC28	ENSG00000100154.10	921.63980	1201.64170	-0.38270	2.87420	1.84390	HepG2	DDX5
TTC28	ENSG00000100154.10	1313.93700	1074.23720	0.29050	2.39620	1.30960	HepG2	EIF2S2
TTC28	ENSG00000100154.10	1252.99570	952.38160	0.39570	2.45410	1.85070	HepG2	EIF4A3
TTC28	ENSG00000100154.10	1305.02400	927.45190	0.49260	2.93020	2.22330	HepG2	EIF4B
TTC28	ENSG00000100154.10	1735.17390	1378.91280	0.33140	4.13970	3.42980	HepG2	ETF1
TTC28	ENSG00000100154.10	1071.13000	754.84070	0.50480	4.82680	3.80320	HepG2	FUBP3
TTC28	ENSG00000100154.10	1155.37500	891.49910	0.37400	2.33410	1.72040	HepG2	G3BP1
TTC28	ENSG00000100154.10	1321.65450	946.63100	0.48140	3.99350	2.91570	HepG2	G3BP2
TTC28	ENSG00000100154.10	1018.08030	811.74660	0.32660	2.19250	1.61210	HepG2	HNRNPA1
TTC28	ENSG00000100154.10	1339.62260	1093.44130	0.29290	3.00730	2.26200	HepG2	HNRNPF
TTC28	ENSG00000100154.10	1580.09660	1128.20140	0.48590	4.39330	3.61560	HepG2	HNRNPLL
TTC28	ENSG00000100154.10	770.22830	986.58920	-0.35720	2.79490	1.83970	HepG2	HNRNPM
TTC28	ENSG00000100154.10	1104.08550	896.95560	0.29960	3.09560	2.45690	HepG2	HNRNPU
TTC28	ENSG00000100154.10	1345.40700	906.13750	0.57010	5.15860	4.26270	HepG2	IGF2BP2
TTC28	ENSG00000100154.10	1423.24280	1000.38760	0.50850	4.99510	4.00090	HepG2	NSUN2
TTC28	ENSG00000100154.10	598.53970	915.75540	-0.61350	3.15200	2.20040	HepG2	PABPC1
TTC28	ENSG00000100154.10	1100.72820	925.83960	0.24950	2.30560	1.74130	HepG2	PCBP1
TTC28	ENSG00000100154.10	1304.23880	1047.94370	0.31550	4.43600	3.72420	HepG2	PUM1
TTC28	ENSG00000100154.10	1256.61060	1047.17410	0.26290	2.09130	1.50310	HepG2	PUM2
TTC28	ENSG00000100154.10	1324.94720	1020.25430	0.37690	4.01500	3.28250	HepG2	QKI
TTC28	ENSG00000100154.10	1510.94710	1152.49410	0.39060	4.22470	3.61930	HepG2	RBM22
TTC28	ENSG00000100154.10	1160.28980	925.97530	0.32530	2.64840	1.98620	HepG2	RBM25
TTC28	ENSG00000100154.10	1418.64150	1048.45070	0.43620	6.10450	5.35350	HepG2	NELFE
TTC28	ENSG00000100154.10	1434.25170	976.54340	0.55440	9.82350	8.77020	HepG2	RECQL
TTC28	ENSG00000100154.10	1214.51840	980.79610	0.30830	3.29680	2.65780	HepG2	SF3B4
TTC28	ENSG00000100154.10	1196.51880	946.56700	0.33800	4.43860	3.58160	HepG2	SLBP
TTC28	ENSG00000100154.10	1569.36880	1301.66090	0.26970	2.98230	2.46840	HepG2	SRFBP1
TTC28	ENSG00000100154.10	1164.58600	974.70610	0.25670	2.49600	1.89700	HepG2	SRSF5
TTC28	ENSG00000100154.10	1529.42330	1130.08230	0.43650	6.88810	6.14870	HepG2	SSB
TTC28	ENSG00000100154.10	1450.28610	1108.50260	0.38760	6.08640	5.22940	HepG2	SUCLG1
TTC28	ENSG00000100154.10	1317.83380	920.27280	0.51790	7.63720	6.78210	HepG2	TAF15
TTC28	ENSG00000100154.10	1390.33610	1099.72490	0.33820	2.51050	1.81510	HepG2	TARDBP
TTC28	ENSG00000100154.10	1020.61020	845.52800	0.27140	2.03570	1.31610	HepG2	TIA1
TTC28	ENSG00000100154.10	736.47930	879.35290	-0.25580	1.89370	1.40960	HepG2	TRIM56
TTC28	ENSG00000100154.10	1667.60540	895.23030	0.89730	2.67920	1.70750	HepG2	U2AF2
TTC28	ENSG00000100154.10	1140.17740	1478.19750	-0.37460	5.47920	4.54820	HepG2	UPF1
TTC28	ENSG00000100154.10	1171.26450	1427.14420	-0.28510	3.28290	2.64050	HepG2	UTP3
TTC28	ENSG00000100154.10	616.60170	901.43440	-0.54790	3.41630	2.18850	HepG2	XPO5
TTC28	ENSG00000100154.10	1338.43980	1126.51780	0.24860	2.85750	2.17720	HepG2	ZC3H8
TTC28	ENSG00000100154.10	1323.48110	1625.73670	-0.29680	4.48750	3.83480	HepG2	ZNF622
TTC28	ENSG00000100154.10	348.64700	574.57200	-0.72070	8.21710	7.31050	K562	AGGF1
TTC28	ENSG00000100154.10	444.98050	631.32530	-0.50460	4.00380	2.77560	K562	AKAP8
TTC28	ENSG00000100154.10	356.32920	597.85780	-0.74660	7.25820	6.15590	K562	AKAP8L
TTC28	ENSG00000100154.10	308.16030	460.39230	-0.57920	3.74480	3.08270	K562	AQR
TTC28	ENSG00000100154.10	400.25680	627.27700	-0.64820	7.21540	5.64690	K562	ATP5C1
TTC28	ENSG00000100154.10	615.84500	842.98080	-0.45290	4.21410	3.00270	K562	CELF1
TTC28	ENSG00000100154.10	438.89580	643.40330	-0.55180	5.78920	4.46350	K562	DKC1
TTC28	ENSG00000100154.10	471.32690	354.44340	0.41110	2.85610	2.12720	K562	EIF2S2
TTC28	ENSG00000100154.10	427.23550	250.70930	0.76890	3.56440	2.40780	K562	EIF3A
TTC28	ENSG00000100154.10	507.59240	287.56240	0.81970	5.53710	4.00390	K562	EIF3D
TTC28	ENSG00000100154.10	124.59910	196.38910	-0.65640	2.19610	1.57710	K562	G3BP2
TTC28	ENSG00000100154.10	386.73590	253.83120	0.60740	3.87490	3.18360	K562	HNRNPC
TTC28	ENSG00000100154.10	335.45640	226.67080	0.56540	3.22310	1.98230	K562	HNRNPF
TTC28	ENSG00000100154.10	441.74140	577.59550	-0.38690	2.54380	1.53480	K562	HNRNPL
TTC28	ENSG00000100154.10	420.59480	551.88170	-0.39190	2.22520	1.50850	K562	HSPD1
TTC28	ENSG00000100154.10	425.86090	306.91130	0.47250	2.97660	1.72700	K562	IGF2BP3
TTC28	ENSG00000100154.10	389.48350	634.51310	-0.70410	6.94720	5.49820	K562	KIF1C
TTC28	ENSG00000100154.10	379.84450	257.44090	0.56110	3.21600	1.60820	K562	LIN28B
TTC28	ENSG00000100154.10	332.35410	226.33560	0.55420	3.08710	1.44970	K562	LSM11
TTC28	ENSG00000100154.10	356.17910	607.35550	-0.76990	6.91010	4.90220	K562	MAK16
TTC28	ENSG00000100154.10	626.79590	488.85970	0.35850	2.89000	2.06290	K562	MTPAP
TTC28	ENSG00000100154.10	236.44730	498.22300	-1.07530	8.29450	6.44200	K562	NAA15
TTC28	ENSG00000100154.10	173.93250	264.66510	-0.60560	2.81200	1.50470	K562	NONO
TTC28	ENSG00000100154.10	330.28960	462.08300	-0.48440	2.97810	2.12250	K562	PPIG
TTC28	ENSG00000100154.10	183.40610	261.36300	-0.51100	2.06500	1.41260	K562	PRPF8
TTC28	ENSG00000100154.10	381.19440	592.98560	-0.63750	4.42540	3.76160	K562	PUS1
TTC28	ENSG00000100154.10	339.70060	577.71320	-0.76610	8.46680	7.45460	K562	RBM15
TTC28	ENSG00000100154.10	210.77270	295.30930	-0.48650	2.47080	1.67970	K562	RBM22
TTC28	ENSG00000100154.10	321.79100	207.64170	0.63190	3.90450	2.72530	K562	RCC2
TTC28	ENSG00000100154.10	300.47890	196.83890	0.61010	2.99950	1.91990	K562	SRFBP1
TTC28	ENSG00000100154.10	721.55830	549.10470	0.39390	3.82830	2.74670	K562	SRPK2
TTC28	ENSG00000100154.10	351.83140	488.49090	-0.47340	2.72270	1.48400	K562	STAU1
TTC28	ENSG00000100154.10	307.99750	218.89980	0.49250	2.22260	1.39230	K562	TIAL1
TTC28	ENSG00000100154.10	737.97500	575.93970	0.35760	3.21890	2.44640	K562	UPF1
TTC28	ENSG00000100154.10	637.41760	512.46250	0.31470	2.58620	1.76560	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TTC28 is not available on ENCORE database.

1 RBPs can affect the splicing of TTC28 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	TTC28	ENSG00000100154.10	chr22	-	28491072	28491170			28490067	28490233	28492177	28492396	0.55600	0.00173	0.02243	included	HepG2	U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TTC28

General Information

Functions

Localization

Domains (AlphaFold: TTC28)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TTC28 is not avaliable on ENCORE database.

31 proteins are bound to TTC28 RNA:

eCLIP assay for TTC28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TTC28 is not available on ENCORE database.

75 RBPs can affect the gene expression of TTC28 :

The Knockdown/knockout RNA-Seq assay for TTC28 is not available on ENCORE database.

1 RBPs can affect the splicing of TTC28 :

The Knockdown/knockout RNA-Seq assay for TTC28 is not avaliable on ENCORE database.