TRPC1

General Information

Gene Name       : TRPC1
Gene ID             : ENSG00000144935.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRPC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRPC1ENSG00000144935.140.170.080.12ENCSR000AEF
HepG2TRPC1ENSG00000144935.143.606.495.04ENCSR985KAT
K562TRPC1ENSG00000144935.142.532.022.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRPC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRPC1 RNA is bound by 13 proteins.  







eCLIP assay for TRPC1 is not avaliable on ENCORE database.





13 proteins are bound to TRPC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3142525309142525368+3'-UTR4.538283.32080HepG2FUBP3
chr3142525368142525467+3'-UTR3.852304.67754HepG2FUBP3
chr3142443346142443402+5'-UTR3.250745.25984HepG2NKRF
chr3142443036142443099+5'-UTR3.271055.15026HepG2NKRF
chr3142467276142467332+5'-UTR,CDS,intron-Proximal4.630254.35676HepG2PRPF8
chr3142443192142443283+5'-UTR3.304645.06962HepG2NKRF
chr3142462319142462386+CDS,intron-Distal,intron-Proximal3.913283.88088K562U2AF2
chr3142503523142503634+CDS,intron-Proximal4.938305.95026HepG2U2AF2
chr3142524855142524922+CDS4.730924.78529HepG2BCLAF1
chr3142499716142499859+CDS3.555178.16183HepG2BCLAF1
chr3142443477142443536+CDS4.408843.02324K562XRN2
chr3142443499142443544+CDS4.973805.36376HepG2NKRF
chr3142443402142443499+CDS3.841278.49474HepG2NKRF
chr3142443544142443579+CDS,intron-Proximal3.803888.18836HepG2NKRF
chr3142503818142503906+CDS,intron-Proximal5.157474.35676HepG2PRPF8
chr3142452850142452911+intron-Distal3.260013.07152HepG2HLTF
chr3142452394142452477+intron-Distal3.570524.72639K562KHSRP
chr3142452751142452813+intron-Distal3.297023.08145HepG2HLTF
chr3142453454142453526+intron-Distal3.258614.07970HepG2HLTF
chr3142455463142455544+intron-Distal,intron-Proximal6.3170817.70285K562PTBP1
chr3142457284142457403+intron-Distal4.143944.07352K562KHSRP
chr3142490423142490534+intron-Distal4.569027.75161HepG2QKI
chr3142469846142469926+intron-Distal3.824773.88679HepG2CSTF2
chr3142460269142460420+intron-Distal4.119494.02395HepG2KHSRP
chr3142451620142451747+intron-Distal4.390655.46313K562KHSRP
chr3142502284142502372+intron-Distal3.566484.64467HepG2HNRNPL
chr3142460310142460423+intron-Distal4.886406.94732K562KHSRP
chr3142455484142455539+intron-Distal6.2564335.82657HepG2PTBP1
chr3142460247142460310+intron-Distal3.323633.68839K562KHSRP
chr3142455458142455484+intron-Distal,intron-Proximal5.029848.13723HepG2PTBP1
chr3142453052142453162+intron-Distal3.729173.18722K562KHDRBS1
chr3142443579142443652+intron-Proximal3.9262510.35257HepG2NKRF
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRPC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRPC1 is not available on ENCORE database.

  • 66 RBPs can affect the levels of TRPC1.  








The Knockdown/knockout RNA-Seq assay for TRPC1 is not available on ENCORE database.





66 RBPs can affect the gene expression of TRPC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRPC1ENSG00000144935.10286.72280814.09700-1.5055019.7250018.43980HepG2AKAP1
TRPC1ENSG00000144935.10299.44870414.80000-0.470102.279301.32830HepG2AKAP8
TRPC1ENSG00000144935.10472.36070673.58690-0.512003.423802.55180HepG2ASCC1
TRPC1ENSG00000144935.10354.24190269.004400.397001.966901.30800HepG2CALR
TRPC1ENSG00000144935.10552.29590389.944000.502102.550801.62000HepG2CCAR1
TRPC1ENSG00000144935.10319.12010639.95720-1.0039010.542609.12170HepG2CIRBP
TRPC1ENSG00000144935.10284.08960410.36140-0.530504.460403.65480HepG2CKAP4
TRPC1ENSG00000144935.10417.41050197.288001.081109.725008.51190HepG2CPSF6
TRPC1ENSG00000144935.10395.63340557.99410-0.496105.371004.38340HepG2DAZAP1
TRPC1ENSG00000144935.10229.31210332.50930-0.536102.885202.19400HepG2DDX21
TRPC1ENSG00000144935.10538.07130779.82190-0.535303.834003.10900HepG2DDX3X
TRPC1ENSG00000144935.10451.51610322.520200.485302.835401.81180HepG2DDX5
TRPC1ENSG00000144935.10450.77630669.93350-0.571603.669402.96590HepG2DDX6
TRPC1ENSG00000144935.10159.23860273.09360-0.778202.867502.20590HepG2DNAJC2
TRPC1ENSG00000144935.10461.24580711.64210-0.625604.350403.55270HepG2EIF4A3
TRPC1ENSG00000144935.10494.29830692.92960-0.487302.453001.80420HepG2EIF4B
TRPC1ENSG00000144935.10686.58970550.393900.318902.108501.36170HepG2EIF4G1
TRPC1ENSG00000144935.10212.81120361.08740-0.762804.317403.37250HepG2FIP1L1
TRPC1ENSG00000144935.10347.66970718.09020-1.0464011.9323010.59770HepG2FXR1
TRPC1ENSG00000144935.10499.10330707.19600-0.502803.449502.44850HepG2G3BP2
TRPC1ENSG00000144935.10310.51350223.635800.473401.931601.39050HepG2GPKOW
TRPC1ENSG00000144935.10308.76540674.57180-1.1275013.6211012.18920HepG2HNRNPK
TRPC1ENSG00000144935.10320.08950508.32560-0.667307.356106.30390HepG2HNRNPL
TRPC1ENSG00000144935.10301.10480213.420200.496502.172601.60850HepG2HNRNPLL
TRPC1ENSG00000144935.10491.14090677.05780-0.463103.046502.34300HepG2IGF2BP2
TRPC1ENSG00000144935.10177.18900314.03310-0.825603.098802.32700HepG2ILF2
TRPC1ENSG00000144935.10400.67210681.03010-0.765305.350103.91030HepG2KHSRP
TRPC1ENSG00000144935.10397.50060718.34120-0.853708.212507.09430HepG2MAGOH
TRPC1ENSG00000144935.10223.95290722.34980-1.6895023.4858021.79500HepG2MATR3
TRPC1ENSG00000144935.10332.15270217.673000.609602.223001.36010HepG2MTPAP
TRPC1ENSG00000144935.10458.61670739.35550-0.689005.549504.66700HepG2NCBP2
TRPC1ENSG00000144935.10318.50210189.241900.751004.335903.40470HepG2NSUN2
TRPC1ENSG00000144935.10476.89740658.39990-0.465302.869102.13500HepG2PABPC4
TRPC1ENSG00000144935.10399.27870556.13030-0.478004.286503.56010HepG2PCBP1
TRPC1ENSG00000144935.10307.61190194.200000.663503.360502.51550HepG2PRPF4
TRPC1ENSG00000144935.10423.69370565.88330-0.417503.231302.64930HepG2PTBP1
TRPC1ENSG00000144935.10405.81030560.60570-0.466205.075904.32180HepG2PUM1
TRPC1ENSG00000144935.10275.97370418.03970-0.599105.404204.59530HepG2PUS1
TRPC1ENSG00000144935.10300.78180480.01360-0.674406.020505.32950HepG2RBM22
TRPC1ENSG00000144935.10449.06270629.77380-0.487904.316803.66820HepG2NELFE
TRPC1ENSG00000144935.10152.47420240.46440-0.657303.162202.51170HepG2RPS19
TRPC1ENSG00000144935.10299.33830457.69390-0.612602.974902.27470HepG2SF3A3
TRPC1ENSG00000144935.10456.84650589.15760-0.366902.683702.10010HepG2SF3B4
TRPC1ENSG00000144935.10230.22040397.90890-0.789404.329203.11290HepG2SMNDC1
TRPC1ENSG00000144935.10347.24390614.95300-0.8245010.645609.85030HepG2SRSF1
TRPC1ENSG00000144935.10349.00410521.41550-0.579205.850804.99020HepG2SRSF5
TRPC1ENSG00000144935.10410.40510593.03240-0.531105.966805.11620HepG2SUCLG1
TRPC1ENSG00000144935.10280.93560441.98750-0.653802.293101.32270HepG2TBRG4
TRPC1ENSG00000144935.10171.08110298.82640-0.804602.920302.40940HepG2TIAL1
TRPC1ENSG00000144935.10174.97370411.27080-1.233002.406701.49510HepG2U2AF2
TRPC1ENSG00000144935.10387.51830546.03930-0.494702.738601.90580HepG2UBE2L3
TRPC1ENSG00000144935.10162.46430391.88450-1.2703014.9725013.74620HepG2UTP3
TRPC1ENSG00000144935.10255.49380191.668500.414601.932301.35550HepG2ZC3H8
TRPC1ENSG00000144935.10127.74640200.42500-0.649802.779902.21080K562AGGF1
TRPC1ENSG00000144935.1072.23380123.91580-0.778602.352001.40750K562EIF3D
TRPC1ENSG00000144935.1089.40820143.01350-0.677702.355901.61840K562EIF3G
TRPC1ENSG00000144935.1054.37880111.62520-1.037503.602502.10210K562EWSR1
TRPC1ENSG00000144935.1081.53940132.98630-0.705702.513801.93080K562FXR1
TRPC1ENSG00000144935.1083.54660160.21570-0.939403.967702.45210K562HNRNPK
TRPC1ENSG00000144935.10112.55340178.40890-0.664602.851601.77530K562HNRNPL
TRPC1ENSG00000144935.1054.33620102.82350-0.920202.650001.74140K562HNRNPM
TRPC1ENSG00000144935.10192.51020134.563900.516502.161901.37290K562HNRNPU
TRPC1ENSG00000144935.1096.22550149.99410-0.640402.230101.35650K562PCBP2
TRPC1ENSG00000144935.1062.11080112.60520-0.858402.447201.74050K562PRPF8
TRPC1ENSG00000144935.10104.18210206.79230-0.989102.600902.07070K562PUS1
TRPC1ENSG00000144935.10113.56740201.52010-0.827401.886901.38020K562RBM15
TRPC1ENSG00000144935.1099.27690157.08480-0.662002.148201.41200K562RBM22
TRPC1ENSG00000144935.1061.63670130.45470-1.081702.384901.30270K562SF1
TRPC1ENSG00000144935.1078.28680149.83310-0.936502.543801.38620K562SNRNP200
TRPC1ENSG00000144935.1082.29210160.51890-0.963903.899903.06570K562SRSF1
TRPC1ENSG00000144935.1054.66490110.12330-1.010403.732102.77910K562SYNCRIP
TRPC1ENSG00000144935.10407.03420282.389200.527403.405201.96330K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRPC1 is not available on ENCORE database.





4 RBPs can affect the splicing of TRPC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRPC1ENSG00000144935.10chr3+1425149641425150191425116651425118091425210101425211860.456000.000690.05089includedHepG2IGF2BP3
SETRPC1ENSG00000144935.10chr3+1424623261424624281424552201424553751424670991424673020.871000.000000.00000includedHepG2HNRNPC
SETRPC1ENSG00000144935.10chr3+1424623261424624281424552201424553751424670991424673020.334000.001060.09871includedHepG2KHSRP
SETRPC1ENSG00000144935.10chr3+1425149641425150191425116651425118091425210101425211860.219000.000310.04834includedHepG2KHSRP
SETRPC1ENSG00000144935.10chr3+142455220142455375142443010142443573142467099142467302-0.466000.000490.06278excludedHepG2KHSRP
MXETRPC1ENSG00000144935.10chr3+142455220142455375142462326142462428142442915142443573142467099142467302-0.381000.000680.068732includedHepG2KHSRP
MXETRPC1ENSG00000144935.10chr3+1425098601425100001425116651425118091425035451425038821425210101425211860.300000.001890.054791includedHepG2PCBP1
MXETRPC1ENSG00000144935.10chr3+142455220142455375142462326142462428142442915142443573142467099142467302-0.637000.000000.000102includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRPC1 is not avaliable on ENCORE database.