TRAF3IP2

General Information

Gene Name       : TRAF3IP2
Gene ID             : ENSG00000056972.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRAF3IP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRAF3IP2ENSG00000056972.1815.0522.1318.59ENCSR000AEF
HepG2TRAF3IP2ENSG00000056972.185.205.165.18ENCSR985KAT
K562TRAF3IP2ENSG00000056972.1813.6213.6313.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRAF3IP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRAF3IP2 RNA is bound by 2 proteins.  







eCLIP assay for TRAF3IP2 is not avaliable on ENCORE database.





2 proteins are bound to TRAF3IP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6111880628111880715-CDS,intron-Distal4.299283.65750K562YBX3
chr6111923594111923707-intron-Distal4.004283.76275K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRAF3IP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRAF3IP2 is not available on ENCORE database.

  • 69 RBPs can affect the levels of TRAF3IP2.  








The Knockdown/knockout RNA-Seq assay for TRAF3IP2 is not available on ENCORE database.





69 RBPs can affect the gene expression of TRAF3IP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRAF3IP2ENSG00000056972.14264.89900500.85000-0.918906.730305.94220HepG2AKAP1
TRAF3IP2ENSG00000056972.1489.21100178.70990-1.002304.840204.07680HepG2BOP1
TRAF3IP2ENSG00000056972.14249.15460179.740600.471002.677901.85610HepG2DDX19B
TRAF3IP2ENSG00000056972.14318.25940215.488300.562503.000202.29620HepG2DDX21
TRAF3IP2ENSG00000056972.14266.86000412.15970-0.627103.468902.78440HepG2DDX6
TRAF3IP2ENSG00000056972.14231.56990396.18500-0.774705.039804.25200HepG2EIF2S1
TRAF3IP2ENSG00000056972.14152.16660437.81460-1.5247015.6349014.13260HepG2EIF4A3
TRAF3IP2ENSG00000056972.14152.07090426.30540-1.4871012.2904010.89310HepG2EIF4B
TRAF3IP2ENSG00000056972.14192.23860368.26840-0.937908.967407.98940HepG2ETF1
TRAF3IP2ENSG00000056972.14212.78840361.06840-0.762905.475604.38020HepG2FUBP3
TRAF3IP2ENSG00000056972.14264.36760441.78640-0.740805.172804.24680HepG2FXR1
TRAF3IP2ENSG00000056972.14189.07270409.79540-1.116009.586508.38590HepG2G3BP1
TRAF3IP2ENSG00000056972.14262.18650435.08460-0.730705.109603.88650HepG2G3BP2
TRAF3IP2ENSG00000056972.14209.77500291.72030-0.475702.054901.44660HepG2HNRNPC
TRAF3IP2ENSG00000056972.14213.56680415.01620-0.958507.720506.59850HepG2HNRNPK
TRAF3IP2ENSG00000056972.14126.04900205.75460-0.706903.293002.26310HepG2HNRNPM
TRAF3IP2ENSG00000056972.14139.66950416.53880-1.5764016.9062015.40540HepG2IGF2BP2
TRAF3IP2ENSG00000056972.14134.88340390.94120-1.535206.279804.82890HepG2IGF2BP3
TRAF3IP2ENSG00000056972.14254.11270418.98430-0.721404.007902.78160HepG2KHSRP
TRAF3IP2ENSG00000056972.14303.04300428.92350-0.501202.298201.54730HepG2LARP4
TRAF3IP2ENSG00000056972.14164.07300441.94080-1.4295014.8415013.37840HepG2MAGOH
TRAF3IP2ENSG00000056972.14277.53670444.40620-0.679204.015103.26690HepG2MATR3
TRAF3IP2ENSG00000056972.14319.18010454.86790-0.511102.759802.12800HepG2NCBP2
TRAF3IP2ENSG00000056972.14241.69990405.05920-0.744904.961304.00470HepG2PABPC4
TRAF3IP2ENSG00000056972.14327.93280432.79600-0.400302.708602.10710HepG2PCBP1
TRAF3IP2ENSG00000056972.14231.11090116.133300.992704.992303.94140HepG2PRPF8
TRAF3IP2ENSG00000056972.14299.60050440.38170-0.555704.199603.55640HepG2PTBP1
TRAF3IP2ENSG00000056972.14261.00820476.95370-0.869808.861607.84150HepG2QKI
TRAF3IP2ENSG00000056972.14522.89600289.325500.853709.370007.91950HepG2RBM15
TRAF3IP2ENSG00000056972.14186.69100432.86260-1.2133013.5925012.16550HepG2RBM25
TRAF3IP2ENSG00000056972.14305.18740490.10630-0.683406.398405.63280HepG2NELFE
TRAF3IP2ENSG00000056972.14253.31830456.46070-0.849508.998607.98320HepG2RECQL
TRAF3IP2ENSG00000056972.14141.01520236.41600-0.745503.104802.10620HepG2RPS10
TRAF3IP2ENSG00000056972.1463.13530175.68620-1.476508.465807.29480HepG2SF3B1
TRAF3IP2ENSG00000056972.14191.17300458.50220-1.2620017.1825015.90060HepG2SF3B4
TRAF3IP2ENSG00000056972.14174.29100300.96080-0.788106.531305.60900HepG2SMN1
TRAF3IP2ENSG00000056972.14218.42160478.57380-1.1316014.5023013.60050HepG2SRSF1
TRAF3IP2ENSG00000056972.14144.89040279.64250-0.948607.583306.61540HepG2SRSF5
TRAF3IP2ENSG00000056972.14192.03930389.34240-1.0196011.8818010.87970HepG2SRSF9
TRAF3IP2ENSG00000056972.14293.52570430.15180-0.551404.186803.51880HepG2TAF15
TRAF3IP2ENSG00000056972.14194.85870276.69700-0.505902.384101.57750HepG2TUFM
TRAF3IP2ENSG00000056972.1433.9914088.53950-1.381204.894403.87810HepG2UCHL5
TRAF3IP2ENSG00000056972.14157.55510276.21330-0.809903.010302.31530HepG2ZC3H8
TRAF3IP2ENSG00000056972.14824.09530690.748300.254601.943101.45180K562AGGF1
TRAF3IP2ENSG00000056972.14445.22730610.23220-0.454803.074901.76520K562APOBEC3C
TRAF3IP2ENSG00000056972.141052.03910754.148300.480205.797804.41510K562ATP5C1
TRAF3IP2ENSG00000056972.14436.23080296.817100.555403.902902.97220K562CPSF6
TRAF3IP2ENSG00000056972.14670.11010850.46880-0.343902.776501.80090K562CELF1
TRAF3IP2ENSG00000056972.14518.42130345.804000.584105.363502.87130K562DDX24
TRAF3IP2ENSG00000056972.14472.84030326.356400.534804.073702.77670K562DDX3X
TRAF3IP2ENSG00000056972.14332.26280536.96910-0.692507.756506.74140K562DDX47
TRAF3IP2ENSG00000056972.14929.14190773.429300.264502.177201.41100K562DKC1
TRAF3IP2ENSG00000056972.14466.60650340.968000.452502.828401.99820K562EIF4A3
TRAF3IP2ENSG00000056972.14507.98370691.59190-0.445104.121802.98130K562EIF4G2
TRAF3IP2ENSG00000056972.14553.89550389.014000.509703.949902.39590K562EXOSC5
TRAF3IP2ENSG00000056972.14214.24870354.59350-0.726905.686204.86370K562FXR1
TRAF3IP2ENSG00000056972.14677.67740426.349000.668502.460101.33100K562HNRNPA2B1
TRAF3IP2ENSG00000056972.14300.93190456.80420-0.602102.102901.57330K562HNRNPC
TRAF3IP2ENSG00000056972.14677.95820460.542000.557807.218206.09460K562NSUN2
TRAF3IP2ENSG00000056972.14721.54680372.769900.952704.589303.22540K562PABPN1
TRAF3IP2ENSG00000056972.14366.67390494.82490-0.432402.199801.45840K562PCBP3
TRAF3IP2ENSG00000056972.14244.09220379.55420-0.636904.506503.48050K562POLR2G
TRAF3IP2ENSG00000056972.14758.22570443.019900.775202.939701.43000K562PPP1R8
TRAF3IP2ENSG00000056972.14562.76020754.56520-0.423103.119602.25550K562PUF60
TRAF3IP2ENSG00000056972.141112.60790712.804800.642304.057903.41900K562PUS1
TRAF3IP2ENSG00000056972.141027.52660694.523600.565007.247806.31910K562RBM15
TRAF3IP2ENSG00000056972.14240.12320334.10050-0.476502.455701.43670K562NELFE
TRAF3IP2ENSG00000056972.14267.05200557.22590-1.0611010.159708.11330K562RPS3
TRAF3IP2ENSG00000056972.14675.66240391.550100.787002.639301.45050K562SNRNP200
TRAF3IP2ENSG00000056972.14333.37160465.68270-0.482202.694601.76870K562SRPK2
TRAF3IP2ENSG00000056972.14413.34060306.672500.430502.388401.42340K562SRSF5
TRAF3IP2ENSG00000056972.14310.66460209.548300.568003.395901.95680K562SSB
TRAF3IP2ENSG00000056972.14629.44350488.327300.366101.910801.30620K562UPF1
TRAF3IP2ENSG00000056972.14591.93660417.838400.502404.104603.03100K562WDR3
TRAF3IP2ENSG00000056972.14302.77210434.55780-0.521303.540502.59090K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRAF3IP2 is not available on ENCORE database.





1 RBPs can affect the splicing of TRAF3IP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRAF3IP2ENSG00000056972.14chr6-1119223981119225091119124601119132971119269781119274810.102000.006560.08567includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRAF3IP2 is not avaliable on ENCORE database.