TMTC4

General Information

Gene Name       : TMTC4
Gene ID             : ENSG00000125247.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMTC4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMTC4ENSG00000125247.159.379.089.22ENCSR000AEF
HepG2TMTC4ENSG00000125247.1512.7216.7414.73ENCSR985KAT
K562TMTC4ENSG00000125247.157.936.767.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMTC4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMTC4 RNA is bound by 5 proteins.  







eCLIP assay for TMTC4 is not avaliable on ENCORE database.





5 proteins are bound to TMTC4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13101256194101256310-3'-UTR,intron-Distal4.658794.72618HepG2FUBP3
chr13101326948101327024-5'-UTR,intron-Distal4.422737.13970HepG2PRPF8
chr13101326997101327076-5'-UTR,intron-Distal,intron-Proximal3.687027.12467HepG2DDX3X
chr13101294459101294518-CDS,intron-Distal,intron-Proximal3.439933.86355HepG2PPIG
chr13101294420101294497-CDS,intron-Distal,intron-Proximal3.556305.13777HepG2PRPF8
chr13101308659101308727-CDS,intron-Distal,intron-Proximal4.151573.35169HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMTC4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMTC4 is not available on ENCORE database.

  • 81 RBPs can affect the levels of TMTC4.  








The Knockdown/knockout RNA-Seq assay for TMTC4 is not available on ENCORE database.





81 RBPs can affect the gene expression of TMTC4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMTC4ENSG00000125247.11545.86660662.86060-0.280202.048601.37560HepG2AKAP8L
TMTC4ENSG00000125247.11552.69040863.87170-0.644305.558504.46600HepG2ASCC1
TMTC4ENSG00000125247.11664.22780994.70580-0.582608.360107.27460HepG2AUH
TMTC4ENSG00000125247.11432.75060614.80870-0.506602.474501.58950HepG2BCCIP
TMTC4ENSG00000125247.11269.35500501.78170-0.897605.770204.94490HepG2BOP1
TMTC4ENSG00000125247.11551.98280880.65920-0.674004.886303.57890HepG2CCAR1
TMTC4ENSG00000125247.11539.05750659.62350-0.291202.377701.75320HepG2CKAP4
TMTC4ENSG00000125247.11222.60460462.32910-1.054406.764505.57010HepG2CNOT7
TMTC4ENSG00000125247.11656.57320460.677200.511103.758302.96950HepG2CPSF6
TMTC4ENSG00000125247.11467.86590610.17370-0.383103.649502.70950HepG2DDX19B
TMTC4ENSG00000125247.11395.58820523.48380-0.404102.764901.60640HepG2DDX1
TMTC4ENSG00000125247.11413.81030601.89160-0.540504.169403.35280HepG2DDX21
TMTC4ENSG00000125247.11311.54010455.56300-0.548203.905802.31710HepG2DDX52
TMTC4ENSG00000125247.11441.63430585.41050-0.406602.445201.49300HepG2DDX5
TMTC4ENSG00000125247.11641.62190859.14140-0.421202.371801.79630HepG2DDX6
TMTC4ENSG00000125247.11487.25520631.19390-0.373402.986702.28640HepG2DKC1
TMTC4ENSG00000125247.11253.76160825.90280-1.7025027.7325025.98490HepG2EIF2S1
TMTC4ENSG00000125247.11324.62040441.22010-0.442702.327301.49200HepG2EIF3D
TMTC4ENSG00000125247.111713.060101142.036900.5849011.5604010.46920HepG2ETF1
TMTC4ENSG00000125247.11338.84370573.61830-0.759507.473005.76370HepG2FASTKD2
TMTC4ENSG00000125247.11477.21300706.35840-0.565803.303202.46910HepG2FIP1L1
TMTC4ENSG00000125247.11528.74230730.57790-0.466502.362201.32640HepG2FUS
TMTC4ENSG00000125247.11589.47030854.26740-0.535303.889403.10690HepG2G3BP1
TMTC4ENSG00000125247.11530.67730906.92520-0.773107.994706.46030HepG2G3BP2
TMTC4ENSG00000125247.11688.84810522.252500.399302.219201.64260HepG2GPKOW
TMTC4ENSG00000125247.11748.20630576.423600.376202.386101.73780HepG2HNRNPC
TMTC4ENSG00000125247.11566.49360840.23040-0.568708.376307.26110HepG2HNRNPL
TMTC4ENSG00000125247.11430.22310572.61360-0.412503.730403.03690HepG2HNRNPU
TMTC4ENSG00000125247.11311.29360571.83790-0.877308.728907.36810HepG2MSI2
TMTC4ENSG00000125247.11739.39720948.20080-0.358802.077101.52420HepG2NCBP2
TMTC4ENSG00000125247.11690.83820914.65550-0.404903.791002.89740HepG2NOL12
TMTC4ENSG00000125247.11278.36260554.93970-0.995405.650204.05510HepG2NONO
TMTC4ENSG00000125247.11248.25390422.52570-0.767203.769702.71960HepG2PABPC1
TMTC4ENSG00000125247.11644.22840844.42510-0.390402.383601.70920HepG2PABPC4
TMTC4ENSG00000125247.11351.06820566.80490-0.691107.962706.64370HepG2PARN
TMTC4ENSG00000125247.11673.44170832.95650-0.306702.801102.19160HepG2PCBP1
TMTC4ENSG00000125247.11376.96550691.54170-0.875406.449104.91840HepG2PCBP2
TMTC4ENSG00000125247.11416.10520539.16550-0.373802.864102.08010HepG2PRPF4
TMTC4ENSG00000125247.11469.84650726.92830-0.629603.586102.21050HepG2PRPF6
TMTC4ENSG00000125247.11321.02340466.41650-0.538902.747401.94170HepG2PRPF8
TMTC4ENSG00000125247.11726.78460926.87230-0.350803.963603.28120HepG2PUM1
TMTC4ENSG00000125247.111210.82610833.088900.539305.960305.00460HepG2RBM25
TMTC4ENSG00000125247.11292.87930592.73930-1.0171011.3973010.17510HepG2RPLP0
TMTC4ENSG00000125247.11322.54890429.33450-0.412602.284101.72010HepG2RPS19
TMTC4ENSG00000125247.11295.78930430.89150-0.542803.053402.06410HepG2SERBP1
TMTC4ENSG00000125247.11235.70320674.94140-1.5178017.7030015.92220HepG2SF3A3
TMTC4ENSG00000125247.11745.15730882.45260-0.244001.921901.41410HepG2SF3B4
TMTC4ENSG00000125247.11851.41450548.910000.633203.696102.78840HepG2SNRNP70
TMTC4ENSG00000125247.11814.244501078.11940-0.405005.082904.46190HepG2SRFBP1
TMTC4ENSG00000125247.111368.73130921.061500.571409.685408.92240HepG2SRSF1
TMTC4ENSG00000125247.11305.37120530.76260-0.797505.432703.98830HepG2SRSF3
TMTC4ENSG00000125247.11502.15830749.30850-0.577407.839006.99510HepG2SRSF9
TMTC4ENSG00000125247.11675.43140936.07480-0.470806.037805.33530HepG2SSB
TMTC4ENSG00000125247.11716.43960980.43210-0.452605.997505.14530HepG2SUCLG1
TMTC4ENSG00000125247.11339.13640582.46990-0.780305.416703.56270HepG2SUGP2
TMTC4ENSG00000125247.11287.06920477.10220-0.732906.346104.95950HepG2SUPT6H
TMTC4ENSG00000125247.11440.20390601.76830-0.451002.104801.50430HepG2SUPV3L1
TMTC4ENSG00000125247.11377.51260556.44750-0.559704.905404.27850HepG2TIAL1
TMTC4ENSG00000125247.11374.57890561.37190-0.583706.372205.57970HepG2TRIM56
TMTC4ENSG00000125247.11342.85510604.33340-0.817707.162706.15980HepG2U2AF1
TMTC4ENSG00000125247.11637.30520902.92240-0.502603.199902.30010HepG2UBE2L3
TMTC4ENSG00000125247.11239.34460355.50740-0.570802.967302.18430HepG2UCHL5
TMTC4ENSG00000125247.11772.53770615.242000.328402.758401.71150HepG2UTP18
TMTC4ENSG00000125247.11382.34510577.89530-0.595906.192005.35490HepG2UTP3
TMTC4ENSG00000125247.11360.59550532.09610-0.561305.149804.28220HepG2ZC3H8
TMTC4ENSG00000125247.11317.02270658.31210-1.0542020.7017019.54720HepG2ZNF622
TMTC4ENSG00000125247.11381.84220510.84220-0.419902.556501.92750K562AKAP8L
TMTC4ENSG00000125247.11170.89480533.27380-1.6418020.6157019.18750K562AQR
TMTC4ENSG00000125247.11129.15550229.51540-0.829504.212903.12980K562BOP1
TMTC4ENSG00000125247.11136.49260203.22250-0.574202.535601.53520K562CCAR1
TMTC4ENSG00000125247.11288.05740440.82420-0.613802.562701.54770K562CNOT7
TMTC4ENSG00000125247.11140.83940244.03720-0.793104.648203.63360K562CPSF6
TMTC4ENSG00000125247.11310.74710450.97650-0.537303.166302.47600K562DDX47
TMTC4ENSG00000125247.11188.52390274.11230-0.540002.635701.74740K562EFTUD2
TMTC4ENSG00000125247.11236.94710359.43250-0.601204.656603.06390K562EIF2S1
TMTC4ENSG00000125247.1199.37590206.71760-1.056704.360903.07350K562EIF3A
TMTC4ENSG00000125247.11165.92730293.46310-0.822604.681103.29140K562EIF3D
TMTC4ENSG00000125247.11167.90560297.18750-0.823705.679204.55290K562EIF3G
TMTC4ENSG00000125247.11210.86770341.88400-0.697204.734503.66120K562EIF4A3
TMTC4ENSG00000125247.11495.57040687.44920-0.472204.727503.51340K562EIF4G2
TMTC4ENSG00000125247.11177.01740248.30900-0.488202.055901.31490K562FMR1
TMTC4ENSG00000125247.11268.74160355.54380-0.403802.266701.70980K562FXR1
TMTC4ENSG00000125247.11117.71310232.99260-0.985005.952304.78950K562GPKOW
TMTC4ENSG00000125247.11101.03630301.51410-1.5774014.7667013.47160K562HNRNPC
TMTC4ENSG00000125247.11300.42630471.98600-0.651706.020404.69190K562HNRNPU
TMTC4ENSG00000125247.11518.40080732.72280-0.499204.014002.65430K562MSI2
TMTC4ENSG00000125247.11277.72280402.49630-0.535303.267802.20310K562PCBP2
TMTC4ENSG00000125247.11134.56360266.74350-0.987205.942504.84200K562PRPF8
TMTC4ENSG00000125247.11505.83280750.03510-0.568305.111504.00470K562PUF60
TMTC4ENSG00000125247.11300.71950421.41730-0.486803.009102.12840K562RBM22
TMTC4ENSG00000125247.11161.53190271.68790-0.750103.708602.76020K562RPS19
TMTC4ENSG00000125247.11216.59930384.50020-0.828007.749706.44000K562SF3A3
TMTC4ENSG00000125247.11195.36940330.30230-0.757605.867204.58910K562SF3B4
TMTC4ENSG00000125247.11176.38480258.22890-0.549902.312701.38790K562SUPV3L1
TMTC4ENSG00000125247.11300.20020436.06730-0.538603.424002.63330K562TARDBP
TMTC4ENSG00000125247.11180.39050260.02370-0.527502.231901.39890K562TIAL1
TMTC4ENSG00000125247.11198.14230317.97520-0.682404.674903.63720K562U2AF2
TMTC4ENSG00000125247.11284.75590413.18530-0.537104.262803.38980K562UPF1
TMTC4ENSG00000125247.11211.36070367.64320-0.798607.873006.51560K562WDR43
TMTC4ENSG00000125247.11439.67900600.73870-0.450303.201602.26600K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMTC4 is not available on ENCORE database.





6 RBPs can affect the splicing of TMTC4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMTC4ENSG00000125247.11chr13-101322613101322823101320832101321048101326997101327049-0.351000.001020.02744excludedHepG2HNRNPK
SETMTC4ENSG00000125247.11chr13-1012909341012911081012901831012902761012944641012945650.376000.005040.05343includedHepG2U2AF2
SETMTC4ENSG00000125247.11chr13-1012909341012911081012901831012902761012944641012945650.257000.000410.04340includedHepG2SUPV3L1
SETMTC4ENSG00000125247.11chr13-101308634101308722101294464101294565101315217101315434-0.443000.000350.01685excludedK562HNRNPU
RITMTC4ENSG00000125247.11chr13-1012870581012874491012870581012871901012872771012874490.227000.000640.09308includedK562ZRANB2
RITMTC4ENSG00000125247.11chr13-1012870581012874491012870581012871901012872771012874490.136000.005970.06102includedHepG2PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMTC4 is not avaliable on ENCORE database.