SNAPC2

General Information

Gene Name       : SNAPC2
Gene ID             : ENSG00000104976.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNAPC2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNAPC2ENSG00000104976.110.543.702.12ENCSR000AEF
HepG2SNAPC2ENSG00000104976.1110.873.157.01ENCSR985KAT
K562SNAPC2ENSG00000104976.1128.7912.2620.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNAPC2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNAPC2 RNA is bound by 2 proteins.  







eCLIP assay for SNAPC2 is not avaliable on ENCORE database.





2 proteins are bound to SNAPC2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1979880077988071+3'-UTR3.800253.15159HepG2LARP4
chr1979877927987951+3'-UTR4.789726.71037HepG2UPF1
chr1979878487987945+3'-UTR3.523416.25570K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNAPC2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNAPC2 is not available on ENCORE database.

  • 79 RBPs can affect the levels of SNAPC2.  








The Knockdown/knockout RNA-Seq assay for SNAPC2 is not available on ENCORE database.





79 RBPs can affect the gene expression of SNAPC2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNAPC2ENSG00000104976.794.64100148.20260-0.647002.115001.43410HepG2CALR
SNAPC2ENSG00000104976.7344.36720208.432600.724302.719502.10730HepG2DDX6
SNAPC2ENSG00000104976.7198.4945078.612301.336208.379407.20830HepG2DNAJC21
SNAPC2ENSG00000104976.7172.2911077.912601.144807.676206.66020HepG2DNAJC2
SNAPC2ENSG00000104976.7204.30650320.62090-0.650104.753004.00360HepG2ETF1
SNAPC2ENSG00000104976.7190.02850286.58120-0.592703.193802.35350HepG2FUBP3
SNAPC2ENSG00000104976.7245.00220158.508500.628103.417202.62630HepG2HNRNPF
SNAPC2ENSG00000104976.7188.11840109.765700.777104.089103.28210HepG2HNRNPL
SNAPC2ENSG00000104976.7147.2037087.694000.747203.365802.70280HepG2HNRNPU
SNAPC2ENSG00000104976.7218.68040156.083400.486401.947501.33140HepG2IGF2BP1
SNAPC2ENSG00000104976.7148.1821089.576800.726103.463502.64990HepG2ILF2
SNAPC2ENSG00000104976.7198.56170119.483500.732703.699402.81570HepG2NOL12
SNAPC2ENSG00000104976.7154.0285079.214300.959303.581201.94610HepG2NOLC1
SNAPC2ENSG00000104976.7214.04670108.105900.985402.919902.00700HepG2PABPC1
SNAPC2ENSG00000104976.7209.5404078.216301.4216011.6421010.18860HepG2PPIL4
SNAPC2ENSG00000104976.7177.83330114.054900.640702.504001.93320HepG2PUF60
SNAPC2ENSG00000104976.7196.42450121.071300.698003.681803.01820HepG2PUM1
SNAPC2ENSG00000104976.7247.31110120.984701.031404.928604.04740HepG2PUM2
SNAPC2ENSG00000104976.7171.89760269.19330-0.647103.537102.84280HepG2QKI
SNAPC2ENSG00000104976.7168.0060088.130800.930702.625701.66000HepG2RBM27
SNAPC2ENSG00000104976.7169.8916071.566701.247205.006203.57080HepG2RCC2
SNAPC2ENSG00000104976.7144.3378078.096400.886003.692402.96740HepG2SAFB2
SNAPC2ENSG00000104976.7358.52390244.113100.554402.763202.08940HepG2SF3A3
SNAPC2ENSG00000104976.7190.77760109.354800.802803.413402.64810HepG2SLBP
SNAPC2ENSG00000104976.7139.2114091.075500.612002.320701.72410HepG2SMN1
SNAPC2ENSG00000104976.7128.36870270.11510-1.073308.204207.48950HepG2SRSF1
SNAPC2ENSG00000104976.7172.50260112.609000.615202.573301.96500HepG2SRSF5
SNAPC2ENSG00000104976.7147.02360219.75610-0.579903.094002.51670HepG2SRSF9
SNAPC2ENSG00000104976.7185.53460262.77320-0.502102.763202.25060HepG2SSB
SNAPC2ENSG00000104976.7237.05030128.070500.888206.070005.21380HepG2SUCLG1
SNAPC2ENSG00000104976.7100.90890242.80000-1.266707.948107.07660HepG2TAF15
SNAPC2ENSG00000104976.7136.5253085.218000.679802.433801.95960HepG2TIAL1
SNAPC2ENSG00000104976.7190.0245085.972401.144108.051207.16810HepG2TRIM56
SNAPC2ENSG00000104976.7195.56450111.421900.811503.893502.83540HepG2TUFM
SNAPC2ENSG00000104976.7240.25460117.935201.026504.639503.53600HepG2UBE2L3
SNAPC2ENSG00000104976.7747.60120433.406900.7864011.8877010.80230K562AGGF1
SNAPC2ENSG00000104976.7649.47670476.269000.447403.404302.28990K562AKAP8
SNAPC2ENSG00000104976.7807.83430450.984500.840903.793903.02670K562AKAP8L
SNAPC2ENSG00000104976.7310.91290217.308900.516702.843601.87070K562BCLAF1
SNAPC2ENSG00000104976.7277.63700164.861300.751804.496903.10540K562CSTF2
SNAPC2ENSG00000104976.7594.48880771.37680-0.375802.954401.94770K562CELF1
SNAPC2ENSG00000104976.7679.79040508.505300.418702.974701.45050K562DDX19B
SNAPC2ENSG00000104976.7314.93470177.727700.825304.795702.60200K562DDX51
SNAPC2ENSG00000104976.7674.04180485.260200.474003.350202.37520K562DKC1
SNAPC2ENSG00000104976.7270.69220164.434000.719003.597602.54580K562EFTUD2
SNAPC2ENSG00000104976.7134.3564080.874800.732202.830502.02610K562EIF3G
SNAPC2ENSG00000104976.7387.24910287.822600.428002.594301.34840K562EWSR1
SNAPC2ENSG00000104976.7357.01890254.162000.490202.720001.87890K562FIP1L1
SNAPC2ENSG00000104976.79.4002048.45370-2.365805.601904.51560K562G3BP2
SNAPC2ENSG00000104976.7434.34050131.659501.721905.994404.23950K562IGF2BP2
SNAPC2ENSG00000104976.7241.50590421.54620-0.803603.500701.87340K562ILF2
SNAPC2ENSG00000104976.7256.27310138.190700.890905.812304.57890K562MAGOH
SNAPC2ENSG00000104976.7636.23210458.142400.473703.433102.19470K562MAK16
SNAPC2ENSG00000104976.7240.31270137.883200.801404.762003.51690K562MATR3
SNAPC2ENSG00000104976.7750.17680536.143800.484504.431103.22810K562MBNL1
SNAPC2ENSG00000104976.7377.84080507.44860-0.425503.304802.42410K562MTPAP
SNAPC2ENSG00000104976.7324.21200162.217400.998906.639804.47770K562NONO
SNAPC2ENSG00000104976.7607.96930350.038300.796403.415202.28200K562PABPN1
SNAPC2ENSG00000104976.7215.35570135.165100.671902.979101.57660K562PCBP1
SNAPC2ENSG00000104976.7238.28250481.51630-1.014905.241304.09370K562PCBP3
SNAPC2ENSG00000104976.7218.16800369.31060-0.759403.418302.52170K562POLR2G
SNAPC2ENSG00000104976.7518.09660288.559400.844308.104706.52920K562PPIG
SNAPC2ENSG00000104976.7709.06140416.171400.768603.025001.48230K562PPP1R8
SNAPC2ENSG00000104976.7236.34540160.015200.562602.069301.41620K562PRPF8
SNAPC2ENSG00000104976.7317.55920134.274201.241706.925205.91070K562PTBP1
SNAPC2ENSG00000104976.7488.83620728.05130-0.574705.727604.14600K562PUM1
SNAPC2ENSG00000104976.7828.78570447.217000.889903.743103.12520K562PUS1
SNAPC2ENSG00000104976.7796.03380435.775300.8691013.3055011.99960K562RBM15
SNAPC2ENSG00000104976.7278.99020128.655501.116605.157603.96980K562RBM22
SNAPC2ENSG00000104976.7259.83720162.935300.673202.714101.90590K562RPS19
SNAPC2ENSG00000104976.784.9508050.331200.755102.044001.31070K562SF3B4
SNAPC2ENSG00000104976.7464.45090304.700400.608004.103102.78020K562SRFBP1
SNAPC2ENSG00000104976.7264.57060159.863000.726703.693001.76860K562SRP68
SNAPC2ENSG00000104976.7221.11150131.653500.747902.862802.14590K562SRSF1
SNAPC2ENSG00000104976.7260.17820124.386401.064605.363603.81410K562SRSF5
SNAPC2ENSG00000104976.7211.70240333.44070-0.655403.713502.11930K562SSRP1
SNAPC2ENSG00000104976.7261.15900370.46800-0.504402.620801.82420K562SYNCRIP
SNAPC2ENSG00000104976.7311.58720133.198801.226003.907203.05930K562TARDBP
SNAPC2ENSG00000104976.7280.31650128.496601.125209.060207.46380K562TIA1
SNAPC2ENSG00000104976.7273.01800126.195501.113208.187306.03120K562TRA2A
SNAPC2ENSG00000104976.7747.49750453.467700.721002.874501.55060K562UTP18
SNAPC2ENSG00000104976.7383.69600531.94990-0.471304.478603.42090K562WDR43
SNAPC2ENSG00000104976.7277.28710166.994000.731503.776202.28530K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNAPC2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SNAPC2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SNAPC2 is not avaliable on ENCORE database.