SCAF8

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SCAF8	ENSG00000213079.9	22.10	18.98	20.54	ENCSR000AEF
HepG2	SCAF8	ENSG00000213079.9	15.62	27.99	21.80	ENCSR985KAT
K562	SCAF8	ENSG00000213079.9	25.99	27.66	26.82	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Controls	Method	Note
knockdown followed by RNA-seq	SCAF8-BGKcLV33-K562		SCAF8	K562	Released		CRISPR	KD% = 69.0,73.3
knockdown followed by RNA-seq	SCAF8-BGKcLV33-K562	ENCSR329UEC	SCAF8	K562	Released	ENCSR271ZAB	CRISPR	KD% = 95.7,98.3
knockdown followed by RNA-seq	SCAF8-BGHcLV31-HepG2	ENCSR330VES	SCAF8	HepG2	Released	ENCSR452TFV	CRISPR	KD% = 86.7,79.1

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SCAF8	ENCAB569CKW	A301-036A	1			Released, ENCODE4	BGHcLV31-29, Released, ENCODE4	BGKcLV33-33, Released, ENCODE4
SCAF8	ENCAB332NQB	A301-037A	1			Released, ENCODE4	BGHcLV31-29, Released, ENCODE4	BGKcLV33-33, Released, ENCODE4

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SCAF8	K562	CRISPR			BGKcLV33-27,BGKcLV33-28	BGKcLV33-1,BGKcLV33-2	69.0,73.3	Released	ENCODE4
SCAF8	K562	CRISPR	ENCSR329UEC	ENCSR271ZAB	SCAF8-BGKcLV33-33,SCAF8-BGKcLV33-34	NT-BGKcLV33-1,NT-BGKcLV33-2	95.7,98.3	Released	ENCODE4
SCAF8	HepG2	CRISPR	ENCSR330VES	ENCSR452TFV	SCAF8-BGHcLV31-29,SCAF8-BGHcLV31-30	NT-BGHcLV31-1,NT-BGHcLV31-2	86.7,79.1	Released	ENCODE4
SCAF8	293T	shRNA			SCAF8-BG293LV04-71,SCAF8-BG293LV04-72	NT-BG293LV04-1,NT-BG293LV04-2	,	Submitting	ENCORE2
SCAF8	293T	shRNA			BG293LV04-73,BG293LV04-74	BG293LV04-1,BG293LV04-2		NotSatisfied	ENCORE2
SCAF8	293T	shRNA			SCAF8-BG293LV06-51,SCAF8-BG293LV06-52	NT-BG293LV06-1,NT-BG293LV06-2	,	Sequenced	ENCORE2

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SCAF8 is not avaliable on ENCORE database.

Proteins bound to RNA

SCAF8 RNA is bound by 45 proteins.

eCLIP assay for SCAF8 is not avaliable on ENCORE database.

45 proteins are bound to SCAF8 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	155154537	155154608	+	3'-UTR,5'-UTR,intron-Proximal	3.94336	13.79507	K562	PUM2
chr6	155154560	155154601	+	3'-UTR,intron-Proximal	3.93056	4.93978	HepG2	BCLAF1
chr6	155154435	155154538	+	3'-UTR,5'-UTR,CDS	3.15059	9.17110	HepG2	BCLAF1
chr6	155154559	155154661	+	3'-UTR,intron-Distal,intron-Proximal	3.78874	4.97883	K562	CPSF6
chr6	155154757	155154799	+	3'-UTR,intron-Distal	3.82737	3.19904	K562	TIA1
chr6	155155190	155155297	+	3'-UTR,intron-Distal	4.27645	4.75311	K562	CSTF2T
chr6	155054586	155054633	+	5'-UTR,CDS	3.37811	4.62864	K562	ZNF622
chr6	155054550	155054651	+	5'-UTR,CDS,intron-Proximal	3.67827	15.43518	HepG2	NCBP2
chr6	155054579	155054644	+	5'-UTR,CDS,intron-Proximal	3.52031	7.91814	HepG2	DDX3X
chr6	155054985	155055044	+	5'-UTR,CDS	4.59809	3.94554	K562	XRN2
chr6	155054581	155054641	+	5'-UTR,CDS,intron-Proximal	4.67984	4.48994	K562	RBM15
chr6	155109121	155109155	+	CDS	3.41902	9.67260	HepG2	BCLAF1
chr6	155126555	155126590	+	CDS	3.84560	6.97808	HepG2	BCLAF1
chr6	155139608	155139657	+	CDS,intron-Proximal	3.00909	3.30959	HepG2	AQR
chr6	155126485	155126551	+	CDS,intron-Proximal	3.81179	3.58455	K562	U2AF2
chr6	155139602	155139652	+	CDS,intron-Proximal	3.92935	5.83621	K562	AQR
chr6	155095065	155095139	+	CDS,intron-Proximal	3.81539	10.51920	K562	KHSRP
chr6	155055054	155055111	+	CDS,intron-Proximal	4.16280	12.49389	HepG2	PRPF8
chr6	155154238	155154317	+	5'-UTR,CDS	3.34363	3.63681	K562	RBM15
chr6	155136852	155136888	+	CDS	4.90638	12.89578	HepG2	BCLAF1
chr6	155108957	155109043	+	CDS,intron-Proximal	3.95429	3.07225	K562	U2AF1
chr6	155141400	155141468	+	CDS,intron-Proximal	4.96779	23.88543	K562	PUM2
chr6	155129218	155129296	+	CDS	3.53445	9.57546	K562	ZNF622
chr6	155114075	155114138	+	CDS,intron-Proximal	3.32881	13.04672	HepG2	PRPF8
chr6	155148312	155148369	+	CDS	3.47927	3.04890	HepG2	UCHL5
chr6	155129848	155129907	+	CDS	3.65644	4.65332	HepG2	ZNF800
chr6	155116076	155116170	+	CDS,intron-Proximal	3.87949	6.26686	K562	SF3B4
chr6	155154013	155154052	+	5'-UTR,CDS	3.06792	3.34735	K562	UCHL5
chr6	155139606	155139647	+	CDS,intron-Proximal	3.16434	5.58362	HepG2	U2AF2
chr6	155126562	155126621	+	CDS,intron-Proximal	4.45358	4.84422	HepG2	IGF2BP1
chr6	155099082	155099188	+	CDS,intron-Proximal	4.44217	14.26770	K562	SF3B4
chr6	155153235	155153380	+	CDS	5.00405	7.57269	K562	IGF2BP1
chr6	155136869	155136909	+	CDS	4.60795	6.10117	HepG2	GRWD1
chr6	155129294	155129332	+	CDS	3.76350	8.50755	HepG2	BCLAF1
chr6	155154060	155154208	+	5'-UTR,CDS	3.31987	4.38249	K562	RBM15
chr6	155139610	155139674	+	CDS,intron-Proximal	3.02685	6.29405	HepG2	PRPF8
chr6	155141261	155141328	+	CDS,intron-Proximal	5.23016	5.40008	K562	SF3B4
chr6	155108946	155109053	+	CDS,intron-Proximal	5.16262	19.00989	HepG2	U2AF2
chr6	155116105	155116171	+	CDS,intron-Proximal	4.51576	6.99120	K562	AQR
chr6	155108983	155109034	+	CDS,intron-Proximal	3.23194	4.26865	K562	U2AF2
chr6	155116152	155116199	+	CDS	3.69712	5.99043	HepG2	GRWD1
chr6	155141418	155141465	+	CDS	3.40365	5.91739	K562	UCHL5
chr6	155141312	155141384	+	CDS	4.50557	6.59996	K562	PUM2
chr6	155129226	155129328	+	CDS	3.56075	5.62184	K562	GRWD1
chr6	155154157	155154194	+	5'-UTR,CDS	4.86577	5.92514	HepG2	HLTF
chr6	155129296	155129334	+	CDS	3.79564	6.84505	K562	ZNF622
chr6	155123118	155123206	+	CDS	3.02210	8.86662	K562	YBX3
chr6	155154307	155154351	+	5'-UTR,CDS	3.25921	6.91872	HepG2	BCLAF1
chr6	155114084	155114109	+	CDS	3.03476	7.90382	HepG2	BCLAF1
chr6	155129904	155129967	+	CDS,intron-Proximal	4.58738	5.34978	HepG2	PRPF8
chr6	155141416	155141449	+	CDS	4.45736	8.94445	HepG2	BCLAF1
chr6	155129827	155129935	+	CDS,intron-Proximal	3.04826	8.10443	K562	UCHL5
chr6	155095186	155095241	+	CDS,intron-Proximal	4.92273	4.35676	HepG2	PRPF8
chr6	155114025	155114102	+	CDS	4.03044	3.90256	HepG2	PRPF4
chr6	155143409	155143438	+	CDS,intron-Proximal	5.52832	13.91986	K562	PUM2
chr6	155055211	155055275	+	intron-Distal	4.95578	35.20163	K562	AKAP8L
chr6	155084912	155084967	+	intron-Distal	3.37022	5.45871	HepG2	HNRNPM
chr6	155073424	155073538	+	intron-Distal	3.27238	10.01132	HepG2	QKI
chr6	155084169	155084288	+	intron-Distal	3.95607	3.45817	K562	MATR3
chr6	155055165	155055212	+	intron-Distal	3.03578	4.11989	HepG2	FAM120A
chr6	155055235	155055320	+	intron-Distal	4.66449	8.02555	HepG2	PCBP2
chr6	155055488	155055548	+	intron-Distal	4.16488	3.55064	HepG2	SFPQ
chr6	155115250	155115340	+	intron-Distal	3.48112	7.20504	HepG2	ILF3
chr6	155072940	155072991	+	intron-Distal	4.35439	4.80665	HepG2	QKI
chr6	155098614	155098678	+	intron-Distal	5.16994	18.12993	HepG2	U2AF2
chr6	155079057	155079117	+	intron-Distal	3.34540	4.71726	HepG2	HNRNPC
chr6	155055236	155055309	+	intron-Distal	4.24619	3.62829	K562	NCBP2
chr6	155055242	155055315	+	intron-Distal	3.04589	6.86290	K562	CSTF2T
chr6	155063686	155063750	+	intron-Distal	5.03010	8.94695	K562	KHSRP
chr6	155097033	155097145	+	intron-Distal	3.16468	3.54383	HepG2	HNRNPL
chr6	155108574	155108670	+	intron-Distal	4.06440	3.27946	HepG2	HNRNPM
chr6	155064194	155064264	+	intron-Distal	3.52701	5.42728	HepG2	HNRNPM
chr6	155151359	155151544	+	intron-Distal	3.67859	5.38829	K562	KHSRP
chr6	155055456	155055527	+	intron-Distal	4.22593	4.72743	K562	NONO
chr6	155069049	155069146	+	intron-Distal	3.07974	4.98641	K562	TARDBP
chr6	155106094	155106184	+	intron-Distal	3.44304	6.80241	K562	KHSRP
chr6	155098764	155098825	+	intron-Distal	3.62170	5.36861	HepG2	U2AF2
chr6	155108871	155108936	+	intron-Distal,intron-Proximal	3.88447	5.56048	K562	KHSRP
chr6	155099000	155099080	+	intron-Distal,intron-Proximal	3.84018	5.78005	K562	KHSRP
chr6	155055368	155055407	+	intron-Distal	3.55952	4.18553	HepG2	NKRF
chr6	155097183	155097268	+	intron-Distal	3.04663	3.63194	K562	HNRNPL
chr6	155104077	155104161	+	intron-Distal	3.00440	3.20628	K562	HNRNPL
chr6	155129404	155129466	+	intron-Distal,intron-Proximal	3.79947	8.13013	K562	AQR
chr6	155077668	155077745	+	intron-Distal	5.02614	7.51037	HepG2	HNRNPM
chr6	155055244	155055365	+	intron-Distal	4.43409	5.98771	K562	GTF2F1
chr6	155137852	155137909	+	intron-Distal	4.17444	3.62238	HepG2	MATR3
chr6	155082114	155082172	+	intron-Distal	3.59862	6.46423	HepG2	HNRNPC
chr6	155106330	155106446	+	intron-Distal	3.79457	13.16707	K562	KHSRP
chr6	155079683	155079802	+	intron-Distal	3.78705	5.88553	K562	MATR3
chr6	155101640	155101692	+	intron-Distal	4.24383	3.06084	HepG2	HNRNPK
chr6	155055316	155055377	+	intron-Distal	3.07489	6.89356	HepG2	CSTF2T
chr6	155055191	155055266	+	intron-Distal	3.38199	5.54182	K562	DHX30
chr6	155080014	155080097	+	intron-Distal	4.27800	4.75572	K562	MATR3
chr6	155117474	155117584	+	intron-Distal	3.28478	3.45713	HepG2	PTBP1
chr6	155055152	155055211	+	intron-Distal,intron-Proximal	4.35092	17.14726	K562	AKAP8L
chr6	155148463	155148520	+	intron-Distal,intron-Proximal	3.23095	3.48890	K562	KHSRP
chr6	155091927	155091945	+	intron-Distal	3.43384	3.76025	HepG2	ILF3
chr6	155063625	155063655	+	intron-Distal	4.19629	8.75493	K562	KHSRP
chr6	155055211	155055304	+	intron-Distal	3.81792	13.54877	HepG2	EFTUD2
chr6	155117485	155117566	+	intron-Distal	3.46909	4.12870	K562	PTBP1
chr6	155058139	155058203	+	intron-Distal	3.63132	4.16303	HepG2	SFPQ
chr6	155055160	155055215	+	intron-Distal,intron-Proximal	3.00872	6.54781	HepG2	NKRF
chr6	155066050	155066090	+	intron-Distal	3.81773	3.27714	HepG2	HNRNPL
chr6	155080813	155080878	+	intron-Distal	3.04549	4.64254	HepG2	HNRNPC
chr6	155088526	155088590	+	intron-Distal	3.18505	3.69184	HepG2	SUGP2
chr6	155132303	155132399	+	intron-Distal	3.15468	3.29213	HepG2	KHSRP
chr6	155101272	155101353	+	intron-Distal	3.56174	9.35789	HepG2	PCBP2
chr6	155137963	155138016	+	intron-Distal	3.21450	3.69184	HepG2	SUGP2
chr6	155080010	155080091	+	intron-Distal	3.28400	4.83120	HepG2	MATR3
chr6	155079436	155079525	+	intron-Distal	3.82552	8.65817	HepG2	HNRNPM
chr6	155055143	155055206	+	intron-Distal,intron-Proximal	4.28788	9.29215	HepG2	EFTUD2
chr6	155055174	155055225	+	intron-Distal	3.54285	4.06931	K562	XRN2
chr6	155115028	155115115	+	intron-Distal	4.17519	3.91772	K562	TARDBP
chr6	155106276	155106330	+	intron-Distal	3.08950	6.77588	K562	KHSRP
chr6	155096112	155096210	+	intron-Distal	4.99084	5.19765	K562	QKI
chr6	155055163	155055200	+	intron-Distal,intron-Proximal	4.18319	4.57620	HepG2	PRPF4
chr6	155120708	155120768	+	intron-Distal	4.51957	4.30178	K562	PTBP1
chr6	155065420	155065506	+	intron-Distal	3.70992	3.01994	HepG2	GTF2F1
chr6	155099918	155100023	+	intron-Distal	4.48593	5.29390	K562	TARDBP
chr6	155061769	155061839	+	intron-Distal	3.24266	8.40745	HepG2	HNRNPC
chr6	155084151	155084222	+	intron-Distal	3.97758	3.02234	K562	KHSRP
chr6	155141507	155141568	+	intron-Distal,intron-Proximal	4.30843	3.85435	K562	PRPF8
chr6	155055580	155055652	+	intron-Distal	3.18490	3.11000	HepG2	HNRNPM
chr6	155101267	155101348	+	intron-Distal	3.12791	4.88448	HepG2	HNRNPL
chr6	155055218	155055368	+	intron-Distal	3.39265	17.64438	HepG2	NKRF
chr6	155102280	155102356	+	intron-Distal	4.63932	3.98095	HepG2	HNRNPL
chr6	155089965	155090004	+	intron-Distal	4.23054	7.46637	HepG2	XPO5
chr6	155137647	155137745	+	intron-Distal	3.94422	6.26907	HepG2	SUGP2
chr6	155114338	155114441	+	intron-Distal	3.25283	4.30679	K562	KHSRP
chr6	155101133	155101266	+	intron-Distal	3.87629	11.79265	HepG2	HNRNPL
chr6	155055228	155055331	+	intron-Distal	3.36086	8.08030	HepG2	GTF2F1
chr6	155087083	155087146	+	intron-Distal	3.81846	5.81617	HepG2	QKI
chr6	155055150	155055210	+	intron-Distal,intron-Proximal	3.86660	3.30705	HepG2	GTF2F1
chr6	155089958	155089965	+	intron-Distal	4.64879	7.14115	HepG2	XPO5
chr6	155091892	155091927	+	intron-Distal	3.52908	4.32282	HepG2	ILF3
chr6	155066128	155066269	+	intron-Distal	3.38796	12.34606	HepG2	QKI
chr6	155063655	155063686	+	intron-Distal	4.36002	10.50718	K562	KHSRP
chr6	155108759	155108907	+	intron-Distal,intron-Proximal	4.04225	8.25088	HepG2	KHSRP
chr6	155096142	155096201	+	intron-Distal	3.88597	5.09669	HepG2	QKI
chr6	155125547	155125688	+	intron-Distal	3.66481	8.86655	K562	KHSRP
chr6	155058145	155058256	+	intron-Distal	3.41627	7.42482	K562	KHSRP
chr6	155055246	155055311	+	intron-Distal	3.28973	8.13862	K562	GEMIN5
chr6	155132409	155132506	+	intron-Distal	3.08878	3.46531	K562	KHSRP
chr6	155136620	155136694	+	intron-Distal	3.95079	3.24603	K562	KHSRP
chr6	155055213	155055272	+	intron-Distal	3.59429	15.27455	HepG2	FAM120A
chr6	155070039	155070084	+	intron-Distal	4.96391	4.96472	K562	LSM11
chr6	155055165	155055213	+	intron-Distal	3.19896	3.16890	HepG2	XRN2
chr6	155098616	155098685	+	intron-Distal	4.87305	8.13497	K562	U2AF2
chr6	155108738	155108871	+	intron-Distal	3.54736	12.32299	K562	KHSRP
chr6	155099331	155099436	+	intron-Distal	3.11984	7.25305	K562	KHSRP
chr6	155055232	155055307	+	intron-Distal	3.59574	8.32714	HepG2	XRN2
chr6	155055251	155055326	+	intron-Distal	3.83712	6.75450	K562	NONO
chr6	155077786	155077861	+	intron-Distal	4.78539	5.00384	HepG2	SFPQ
chr6	155055200	155055275	+	intron-Distal	3.63950	13.06950	HepG2	PRPF4
chr6	155080320	155080369	+	intron-Distal	3.27042	3.39857	HepG2	HNRNPM
chr6	155055159	155055215	+	intron-Distal,intron-Proximal	5.31706	4.83371	K562	EFTUD2
chr6	155055275	155055403	+	intron-Distal	5.37573	57.09095	K562	AKAP8L
chr6	155126204	155126300	+	intron-Distal	3.38640	4.35650	K562	KHSRP
chr6	155106184	155106243	+	intron-Distal	3.66168	8.47371	K562	KHSRP
chr6	155121366	155121458	+	intron-Distal	3.68238	5.28337	HepG2	HNRNPM
chr6	155055239	155055302	+	intron-Distal	3.53589	5.04221	K562	XRN2
chr6	155083517	155083576	+	intron-Distal	3.76593	5.62053	HepG2	HNRNPM
chr6	155055223	155055344	+	intron-Distal	3.16631	9.54592	K562	PRPF8
chr6	155113723	155113785	+	intron-Distal	5.54637	14.28850	K562	AQR
chr6	155063594	155063625	+	intron-Distal	3.91482	7.26586	K562	KHSRP
chr6	155137854	155137915	+	intron-Distal	3.22405	5.36060	HepG2	SUGP2
chr6	155095033	155095065	+	intron-Proximal	4.07348	6.62503	K562	KHSRP
chr6	155099189	155099270	+	intron-Proximal	4.08090	7.43408	HepG2	KHSRP
chr6	155136966	155137046	+	intron-Proximal	4.05476	7.79506	K562	AQR
chr6	155124783	155124836	+	intron-Proximal	4.70859	4.13847	K562	AQR
chr6	155055065	155055113	+	intron-Proximal	4.98720	5.32906	HepG2	AQR
chr6	155129110	155129196	+	intron-Proximal	3.51901	9.89511	K562	KHSRP
chr6	155148392	155148463	+	intron-Proximal	3.39614	4.10408	K562	KHSRP
chr6	155129335	155129389	+	intron-Proximal	4.74336	9.04436	K562	AQR
chr6	155113863	155113900	+	intron-Proximal	3.56982	3.62357	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SCAF8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SCAF8 is not available on ENCORE database.
53 RBPs can affect the levels of SCAF8.

The Knockdown/knockout RNA-Seq assay for SCAF8 is not available on ENCORE database.

53 RBPs can affect the gene expression of SCAF8 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SCAF8	ENSG00000213079.5	1128.80810	1675.17310	-0.56950	3.36230	2.51330	HepG2	CNOT7
SCAF8	ENSG00000213079.5	1573.24490	2264.26900	-0.52530	13.58660	12.15290	HepG2	DAZAP1
SCAF8	ENSG00000213079.5	1853.81650	1507.68310	0.29810	2.59310	1.71100	HepG2	DDX24
SCAF8	ENSG00000213079.5	1531.58270	2029.14940	-0.40590	2.91960	2.27930	HepG2	DDX3X
SCAF8	ENSG00000213079.5	1318.74230	1742.76450	-0.40220	2.66070	2.05480	HepG2	DDX6
SCAF8	ENSG00000213079.5	2073.71280	1638.62520	0.33960	2.55750	1.66880	HepG2	EEF2
SCAF8	ENSG00000213079.5	1358.46400	1675.67630	-0.30280	1.89110	1.39020	HepG2	EIF2S1
SCAF8	ENSG00000213079.5	1778.63920	1330.15660	0.41910	3.71970	2.68030	HepG2	EIF3D
SCAF8	ENSG00000213079.5	2399.86600	1802.86370	0.41260	2.47510	1.82290	HepG2	EIF4B
SCAF8	ENSG00000213079.5	3571.18750	3055.36360	0.22500	3.04730	2.42100	HepG2	ETF1
SCAF8	ENSG00000213079.5	1632.18060	1246.16070	0.38920	3.49730	2.61700	HepG2	FUBP3
SCAF8	ENSG00000213079.5	2509.49860	1839.67620	0.44780	4.23110	3.12040	HepG2	G3BP2
SCAF8	ENSG00000213079.5	2081.53410	2380.78550	-0.19380	2.24460	1.59390	HepG2	HNRNPF
SCAF8	ENSG00000213079.5	1548.35260	2062.53110	-0.41370	8.54040	7.41710	HepG2	HNRNPL
SCAF8	ENSG00000213079.5	1967.34510	1392.09930	0.49890	2.64070	1.61150	HepG2	METAP2
SCAF8	ENSG00000213079.5	2235.61170	1864.31590	0.26190	2.65450	2.04050	HepG2	QKI
SCAF8	ENSG00000213079.5	2534.61870	1776.28830	0.51280	2.66160	1.96970	HepG2	RAVER1
SCAF8	ENSG00000213079.5	2060.12130	1692.01340	0.28390	2.51140	1.86570	HepG2	RBM25
SCAF8	ENSG00000213079.5	2101.07180	1784.35340	0.23560	2.76690	2.15030	HepG2	RECQL
SCAF8	ENSG00000213079.5	3720.45360	2595.32670	0.51950	3.49910	2.73710	HepG2	SF3A3
SCAF8	ENSG00000213079.5	3280.65540	1870.69890	0.81030	30.75640	29.55450	HepG2	SRSF1
SCAF8	ENSG00000213079.5	2567.82920	2116.28390	0.27890	4.10210	3.36810	HepG2	SRSF5
SCAF8	ENSG00000213079.5	2071.18530	2339.08860	-0.17550	1.98690	1.38630	HepG2	SRSF7
SCAF8	ENSG00000213079.5	1727.39840	1521.93420	0.18260	1.80190	1.33920	HepG2	SRSF9
SCAF8	ENSG00000213079.5	1968.58590	1681.52490	0.22730	2.12000	1.61720	HepG2	TAF15
SCAF8	ENSG00000213079.5	1924.97170	1545.02040	0.31710	3.19860	2.30440	HepG2	TIA1
SCAF8	ENSG00000213079.5	1404.18170	1678.50870	-0.25750	2.96330	2.38400	HepG2	TRIM56
SCAF8	ENSG00000213079.5	2560.58630	2069.15660	0.30730	2.63400	2.01990	HepG2	U2AF1
SCAF8	ENSG00000213079.5	550.56080	896.90780	-0.70410	6.78560	5.58370	HepG2	UCHL5
SCAF8	ENSG00000213079.5	1183.15350	1494.57500	-0.33710	2.12470	1.48220	HepG2	XRN2
SCAF8	ENSG00000213079.5	3548.52610	2638.49870	0.42740	9.57280	8.59750	K562	AGGF1
SCAF8	ENSG00000213079.5	3643.57210	2745.48000	0.40820	4.70780	3.84820	K562	AKAP8L
SCAF8	ENSG00000213079.5	4215.00910	2938.25350	0.52050	6.83740	5.98170	K562	AQR
SCAF8	ENSG00000213079.5	3433.10020	2880.67410	0.25300	3.01370	2.06160	K562	ATP5C1
SCAF8	ENSG00000213079.5	4975.41530	3567.29480	0.47990	12.21610	10.95280	K562	DDX47
SCAF8	ENSG00000213079.5	3559.33540	2954.31750	0.26870	3.61650	2.59740	K562	DKC1
SCAF8	ENSG00000213079.5	1950.04070	2311.40210	-0.24530	2.64410	1.93790	K562	EIF2S2
SCAF8	ENSG00000213079.5	1876.94890	1179.50930	0.67010	4.29370	3.01430	K562	EIF3A
SCAF8	ENSG00000213079.5	2408.01880	1795.98530	0.42300	2.94080	1.87120	K562	EIF3D
SCAF8	ENSG00000213079.5	4443.48680	3886.06390	0.19330	2.39440	1.51630	K562	EIF4G2
SCAF8	ENSG00000213079.5	2154.69180	2896.70770	-0.42690	4.67100	3.54890	K562	FIP1L1
SCAF8	ENSG00000213079.5	2670.80000	2057.94930	0.37600	2.27180	1.63900	K562	G3BP2
SCAF8	ENSG00000213079.5	2185.40880	3080.30670	-0.49520	6.84820	5.64990	K562	GRSF1
SCAF8	ENSG00000213079.5	2510.14970	3223.68960	-0.36090	4.02370	2.72250	K562	HNRNPL
SCAF8	ENSG00000213079.5	2900.29750	3927.37020	-0.43740	4.94530	3.89060	K562	HSPD1
SCAF8	ENSG00000213079.5	3910.37910	2913.63170	0.42440	4.86950	3.71780	K562	KIF1C
SCAF8	ENSG00000213079.5	4050.39540	3264.00470	0.31130	3.32530	2.31040	K562	MBNL1
SCAF8	ENSG00000213079.5	3669.87400	2287.83170	0.68160	6.71380	5.11940	K562	NAA15
SCAF8	ENSG00000213079.5	2296.04410	3288.28520	-0.51820	6.20910	4.89720	K562	PPIG
SCAF8	ENSG00000213079.5	2389.84630	1632.22000	0.55000	6.43770	5.29510	K562	PRPF8
SCAF8	ENSG00000213079.5	4266.88760	2722.74520	0.64800	9.71570	8.74650	K562	PUS1
SCAF8	ENSG00000213079.5	4253.95720	2652.91960	0.68110	17.69340	16.17110	K562	RBM15
SCAF8	ENSG00000213079.5	3979.92560	2487.02900	0.67820	2.98170	1.68980	K562	SNRNP200
SCAF8	ENSG00000213079.5	3169.36510	2755.42150	0.20180	2.94250	1.98200	K562	SRPK2
SCAF8	ENSG00000213079.5	2730.42530	2199.69240	0.31170	2.83740	2.12250	K562	SRSF1
SCAF8	ENSG00000213079.5	2477.44430	2060.01670	0.26610	2.57250	1.79740	K562	U2AF2
SCAF8	ENSG00000213079.5	3358.62500	2571.54570	0.38510	8.83310	7.40780	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SCAF8 is not available on ENCORE database.

13 RBPs can affect the splicing of SCAF8 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SCAF8	ENSG00000213079.5	chr6	+	155063089	155063177			155054980	155055064	155095122	155095206	0.15400	0.00042	0.01023	included	K562	SRSF1
SE	SCAF8	ENSG00000213079.5	chr6	+	155063089	155063152			155054986	155055064	155095122	155095206	0.16000	0.00037	0.00930	included	K562	SF3B4
SE	SCAF8	ENSG00000213079.5	chr6	+	155063089	155063152			155054980	155055064	155095122	155095206	-0.06300	0.00380	0.06089	excluded	HepG2	U2AF1
SE	SCAF8	ENSG00000213079.5	chr6	+	155143409	155143543			155141310	155141467	155145367	155145512	-0.12200	0.00000	0.00001	excluded	HepG2	U2AF1
SE	SCAF8	ENSG00000213079.5	chr6	+	155108994	155109156			155054928	155055064	155113956	155114110	-0.11300	0.00647	0.06508	excluded	HepG2	U2AF2
SE	SCAF8	ENSG00000213079.5	chr6	+	155099134	155099179			155095122	155095206	155108994	155109156	-0.08500	0.00648	0.05753	excluded	K562	AQR
SE	SCAF8	ENSG00000213079.5	chr6	+	155108994	155109156			155054928	155055064	155113956	155114110	-0.11500	0.00241	0.03507	excluded	K562	PUS1
SE	SCAF8	ENSG00000213079.5	chr6	+	155063089	155063152			155054980	155055064	155095122	155095206	-0.18700	0.00003	0.01165	excluded	K562	MTPAP
SE	SCAF8	ENSG00000213079.5	chr6	+	155063089	155063152			155054980	155055064	155095122	155095206	0.27000	0.00001	0.00256	included	K562	HNRNPM
SE	SCAF8	ENSG00000213079.5	chr6	+	155063089	155063152			155054980	155055064	155095122	155095206	0.19900	0.00269	0.05505	included	HepG2	SRSF1
SE	SCAF8	ENSG00000213079.5	chr6	+	155063089	155063152			155054986	155055064	155095122	155095206	-0.16400	0.00055	0.08243	excluded	K562	UPF1
A3SS	SCAF8	ENSG00000213079.5	chr6	+	155131124	155131342			155131148	155131342	155129783	155129932	0.05600	0.00000	0.00002	longer	K562	AQR
A3SS	SCAF8	ENSG00000213079.5	chr6	+	155136823	155136950			155136849	155136950	155131124	155131342	0.07100	0.00001	0.00007	longer	K562	AQR
A3SS	SCAF8	ENSG00000213079.5	chr6	+	155129783	155129932			155129819	155129932	155129203	155129335	0.17100	0.00000	0.00000	longer	K562	AQR
MXE	SCAF8	ENSG00000213079.5	chr6	+	155143409	155143543	155145367	155145512	155141310	155141467	155148305	155148374	-0.26800	0.00156	0.02471	2included	K562	DROSHA
MXE	SCAF8	ENSG00000213079.5	chr6	+	155143409	155143543	155145367	155145512	155141310	155141467	155148305	155148374	-0.41400	0.00000	0.00001	2included	HepG2	U2AF2
MXE	SCAF8	ENSG00000213079.5	chr6	+	155143409	155143543	155145367	155145512	155141310	155141467	155148305	155148374	-0.24700	0.00603	0.07214	2included	HepG2	HNRNPUL1
MXE	SCAF8	ENSG00000213079.5	chr6	+	155143409	155143543	155145367	155145512	155141310	155141467	155148305	155148374	-0.19400	0.00343	0.06795	2included	K562	PPIL4
MXE	SCAF8	ENSG00000213079.5	chr6	+	155143409	155143543	155145367	155145512	155141310	155141467	155148305	155148374	-0.14000	0.00011	0.01249	2included	HepG2	LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SCAF8	Product_ID: A301-036A Lot_ID: 1 Source: Bethyl Labs Target Name: SCAF8-human
SCAF8	Product_ID: A301-037A Lot_ID: 1 Source: Bethyl Labs Target Name: SCAF8-human

SCAF8

General Information

Functions

Localization

Domains (AlphaFold: SCAF8)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SCAF8 is not avaliable on ENCORE database.

45 proteins are bound to SCAF8 RNA:

eCLIP assay for SCAF8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SCAF8 is not available on ENCORE database.

53 RBPs can affect the gene expression of SCAF8 :

The Knockdown/knockout RNA-Seq assay for SCAF8 is not available on ENCORE database.

13 RBPs can affect the splicing of SCAF8 :

The Knockdown/knockout RNA-Seq assay for SCAF8 is not avaliable on ENCORE database.