RPF1

General Information

Gene Name       : RPF1
Gene ID             : ENSG00000117133.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPF1ENSG00000117133.1062.0566.3464.19ENCSR000AEF
HepG2RPF1ENSG00000117133.1020.7545.8933.32ENCSR985KAT
K562RPF1ENSG00000117133.1088.78104.8596.81ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPF1 RNA is bound by 3 proteins.  







eCLIP assay for RPF1 is not avaliable on ENCORE database.





3 proteins are bound to RPF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr18496317584963263+3'-UTR4.7243313.44822K562PABPC4
chr18495604884956133+CDS3.065373.19466K562IGF2BP1
chr18496202484962049+CDS4.089063.01428K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPF1 is not available on ENCORE database.

  • 72 RBPs can affect the levels of RPF1.  








The Knockdown/knockout RNA-Seq assay for RPF1 is not available on ENCORE database.





72 RBPs can affect the gene expression of RPF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPF1ENSG00000117133.6197.31630347.44230-0.816303.292701.41750HepG2AARS
RPF1ENSG00000117133.6456.25050365.259800.320802.086701.54430HepG2ACO1
RPF1ENSG00000117133.61141.38420584.195400.9662010.413109.44660HepG2AKAP1
RPF1ENSG00000117133.6498.14450616.15290-0.306702.219501.59250HepG2AUH
RPF1ENSG00000117133.6547.49660708.49610-0.371902.338201.78250HepG2BOP1
RPF1ENSG00000117133.6468.91220650.44100-0.472103.085902.36480HepG2CPSF6
RPF1ENSG00000117133.6524.27240633.12080-0.272202.286501.60400HepG2DAZAP1
RPF1ENSG00000117133.6301.05340480.74250-0.675204.102403.36200HepG2DDX6
RPF1ENSG00000117133.6300.79610414.99430-0.464303.791803.05120HepG2DNAJC2
RPF1ENSG00000117133.6348.81070462.11560-0.405801.962401.45340HepG2EIF2S1
RPF1ENSG00000117133.6367.74540598.26970-0.702105.685004.54020HepG2EIF4G2
RPF1ENSG00000117133.6489.23770356.929100.454802.614901.80220HepG2EWSR1
RPF1ENSG00000117133.6125.82180477.99020-1.9256025.1717023.23280HepG2G3BP1
RPF1ENSG00000117133.6364.42310737.33380-1.0167010.490209.29960HepG2GPKOW
RPF1ENSG00000117133.6557.96650737.53530-0.402503.574602.76790HepG2HNRNPF
RPF1ENSG00000117133.6538.22880703.65040-0.386602.253201.67920HepG2HNRNPLL
RPF1ENSG00000117133.6488.09700726.26830-0.573305.388104.41030HepG2IGF2BP1
RPF1ENSG00000117133.6345.76620488.70680-0.499202.403401.47940HepG2KHSRP
RPF1ENSG00000117133.6454.22920717.61400-0.659803.881502.72090HepG2MTPAP
RPF1ENSG00000117133.6422.29580623.91470-0.563104.012503.11600HepG2NSUN2
RPF1ENSG00000117133.6169.44050258.35110-0.608602.152701.38510HepG2PABPC1
RPF1ENSG00000117133.6355.84990472.46890-0.409002.055401.42510HepG2PABPC4
RPF1ENSG00000117133.6402.70430268.688500.583702.543401.76820HepG2PRPF8
RPF1ENSG00000117133.6900.08280448.877701.003606.915605.82760HepG2RAVER1
RPF1ENSG00000117133.6416.61970509.92700-0.291601.767301.31440HepG2NELFE
RPF1ENSG00000117133.6508.05940355.084600.516703.635802.94070HepG2RPS19
RPF1ENSG00000117133.6433.94400574.52560-0.404903.754602.95720HepG2SLBP
RPF1ENSG00000117133.6987.57470667.819900.564308.313207.57310HepG2SRFBP1
RPF1ENSG00000117133.6679.14850497.936500.447703.831203.29750HepG2SRSF1
RPF1ENSG00000117133.6582.29330724.58110-0.315402.357201.71120HepG2SRSF7
RPF1ENSG00000117133.6460.75400579.83700-0.331702.453201.96470HepG2SSB
RPF1ENSG00000117133.6305.31090435.86390-0.513602.533901.63300HepG2SUPT6H
RPF1ENSG00000117133.6410.10810685.81950-0.741806.956605.87920HepG2TARDBP
RPF1ENSG00000117133.6378.02490232.505900.701102.567901.60380HepG2TFIP11
RPF1ENSG00000117133.6344.50950457.89150-0.410503.201702.60490HepG2TRIM56
RPF1ENSG00000117133.61124.31230552.043001.026109.413908.24290HepG2U2AF1
RPF1ENSG00000117133.6411.86120518.06210-0.331002.320801.67310HepG2UPF1
RPF1ENSG00000117133.6853.47770500.171900.7708012.8179011.67030HepG2UTP3
RPF1ENSG00000117133.61716.506402249.52820-0.390103.656402.22790K562ABCF1
RPF1ENSG00000117133.61460.899601763.03750-0.271201.898501.39530K562AQR
RPF1ENSG00000117133.6773.228601022.41510-0.403004.791903.51000K562BCLAF1
RPF1ENSG00000117133.61017.691901485.73710-0.545902.669701.81360K562BOP1
RPF1ENSG00000117133.61584.063702190.35620-0.467502.392001.41640K562CNOT7
RPF1ENSG00000117133.61074.474301579.84250-0.556104.045703.09740K562CPSF6
RPF1ENSG00000117133.6592.05310775.65430-0.389703.122201.99270K562CSTF2
RPF1ENSG00000117133.62951.792701949.372500.5985015.6637014.22770K562DDX47
RPF1ENSG00000117133.61961.297901393.270700.493208.271906.60910K562DKC1
RPF1ENSG00000117133.61239.700301499.29770-0.274302.290501.62700K562EIF2S2
RPF1ENSG00000117133.6879.32330630.006800.480902.289001.38330K562EIF3A
RPF1ENSG00000117133.61090.19540749.543300.540406.943605.69270K562EIF3G
RPF1ENSG00000117133.61856.374702258.83860-0.283102.619901.70290K562EIF4G2
RPF1ENSG00000117133.61063.066401607.30200-0.596404.471703.38180K562FMR1
RPF1ENSG00000117133.61260.82130690.093600.8694018.4113016.96030K562FXR1
RPF1ENSG00000117133.6482.39150839.25740-0.7989010.172807.43080K562G3BP1
RPF1ENSG00000117133.61032.89660791.932300.383102.050901.45560K562G3BP2
RPF1ENSG00000117133.61026.834301508.42280-0.554803.986003.03800K562GPKOW
RPF1ENSG00000117133.6974.196801240.28090-0.348402.336901.78190K562HNRNPC
RPF1ENSG00000117133.61165.85370876.764100.411003.023301.73060K562HNRNPK
RPF1ENSG00000117133.61822.238701329.893100.454303.602802.52820K562HNRNPM
RPF1ENSG00000117133.62953.932902192.298100.430104.360603.36890K562HSPD1
RPF1ENSG00000117133.6958.986401287.84220-0.425402.475301.59600K562KRR1
RPF1ENSG00000117133.61134.607001472.36280-0.375902.235001.44910K562METAP2
RPF1ENSG00000117133.61044.446201414.92010-0.438003.437602.54090K562MTPAP
RPF1ENSG00000117133.61499.532301078.927600.474803.087802.14770K562NAA15
RPF1ENSG00000117133.61134.894401572.27920-0.470303.187802.39090K562NSUN2
RPF1ENSG00000117133.61355.699602104.29440-0.634304.190402.64190K562PABPC1
RPF1ENSG00000117133.61077.23670820.871300.392002.565601.62460K562PCBP2
RPF1ENSG00000117133.61134.597401418.81800-0.322502.066801.34820K562PCBP3
RPF1ENSG00000117133.61487.06470756.114100.9757015.6632013.85980K562PRPF8
RPF1ENSG00000117133.6832.813201111.98350-0.417103.098202.13450K562PSIP1
RPF1ENSG00000117133.61113.40030896.327300.312802.528001.88940K562PTBP1
RPF1ENSG00000117133.63325.294702464.628900.432002.336401.58680K562PUF60
RPF1ENSG00000117133.61863.206601284.072500.537005.512804.77810K562PUS1
RPF1ENSG00000117133.61158.46350770.364500.588503.370102.46720K562RPS19
RPF1ENSG00000117133.61100.75510823.620100.418304.278903.21010K562SF3B4
RPF1ENSG00000117133.6697.76560961.52050-0.462603.796402.53900K562SRFBP1
RPF1ENSG00000117133.61115.57520878.691100.344302.890802.17140K562SRSF1
RPF1ENSG00000117133.61632.639301091.592600.580708.561007.11380K562SYNCRIP
RPF1ENSG00000117133.6684.04350857.83610-0.326602.304501.56470K562TIA1
RPF1ENSG00000117133.6740.510801069.57620-0.530403.222902.20650K562TIAL1
RPF1ENSG00000117133.6738.559901135.97310-0.621105.091903.71400K562TRIM56
RPF1ENSG00000117133.61483.895101891.79690-0.350402.815401.41660K562TRIP6
RPF1ENSG00000117133.61183.63920767.808200.624305.600203.93200K562U2AF1
RPF1ENSG00000117133.61241.01270792.923700.646209.533208.03880K562U2AF2
RPF1ENSG00000117133.61085.827101667.10700-0.618605.428504.45900K562UPF1
RPF1ENSG00000117133.6994.724601426.51350-0.520103.162102.23000K562WDR3
RPF1ENSG00000117133.61496.964501986.31010-0.408104.035102.95950K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPF1 is not available on ENCORE database.





1 RBPs can affect the splicing of RPF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSRPF1ENSG00000117133.6chr1+8496156484961755849615648496174684961926849620530.071000.000000.00000longerK562AQR
MXERPF1ENSG00000117133.6chr1+84961524849616468496169684961746849610088496113884961926849620530.088000.000050.000611includedK562AQR
MXERPF1ENSG00000117133.6chr1+84961524849616928496169684961746849610088496113884961926849620530.083000.000100.001181includedK562AQR
MXERPF1ENSG00000117133.6chr1+8496156484961692849616928496175584961008849611388496192684962053-0.058000.000010.000192includedK562AQR
MXERPF1ENSG00000117133.6chr1+8496156484961646849616928496175584961008849611388496192684962053-0.060000.000010.000172includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPF1 is not avaliable on ENCORE database.