RNF169

General Information

Gene Name       : RNF169
Gene ID             : ENSG00000166439.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF169)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF169ENSG00000166439.56.205.135.67ENCSR000AEF
HepG2RNF169ENSG00000166439.53.074.633.85ENCSR985KAT
K562RNF169ENSG00000166439.56.396.826.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF169 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF169 RNA is bound by 15 proteins.  







eCLIP assay for RNF169 is not avaliable on ENCORE database.





15 proteins are bound to RNF169 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr117455067574550785+3'-UTR,intron-Distal3.725047.43867K562FAM120A
chr117454934974549473+3'-UTR,intron-Distal6.7341320.97637K562UPF1
chr117454871574548772+3'-UTR,intron-Distal3.9531612.44344K562UPF1
chr117455234174552373+3'-UTR,intron-Distal4.078933.20319K562UPF1
chr117455231874552378+3'-UTR,intron-Distal5.433197.73381K562FAM120A
chr117455223374552273+3'-UTR,intron-Distal3.191133.77257K562FAM120A
chr117454772574547784+3'-UTR,5'-UTR,CDS4.176665.79432HepG2BCLAF1
chr117454956474549609+3'-UTR,intron-Distal5.045377.60978K562UPF1
chr117455068574550798+3'-UTR,intron-Distal5.9688114.04767K562UPF1
chr117445991974460012+5'-UTR,CDS3.168423.28035HepG2NCBP2
chr117452122774521316+CDS,intron-Proximal3.144585.71803K562UCHL5
chr117452125274521378+CDS,intron-Proximal4.242596.22576HepG2BCLAF1
chr117454671074546762+CDS4.142103.15006K562RBM15
chr117446003774460132+CDS4.030316.23335HepG2GRWD1
chr117454766374547759+CDS4.817897.64336HepG2GRWD1
chr117454683474546962+CDS3.781395.97823HepG2BCLAF1
chr117446013274460176+CDS4.105634.21087HepG2GRWD1
chr117450069274500745+CDS,intron-Proximal3.416744.06757K562UCHL5
chr117454766974547757+CDS3.515334.24159K562RBM15
chr117454749374547542+CDS4.452255.40333K562RBM15
chr117454686674546926+CDS3.044883.06971K562YBX3
chr117454669574546771+CDS3.009303.40321HepG2GRWD1
chr117450441674504513+intron-Distal3.917923.35377HepG2QKI
chr117446061374460670+intron-Distal4.549864.97791HepG2RBFOX2
chr117447490274474953+intron-Distal3.892873.27871HepG2SAFB
chr117449131674491560+intron-Distal4.708005.01910HepG2MATR3
chr117449132174491456+intron-Distal3.133075.37771HepG2PTBP1
chr117453306174533144+intron-Distal3.975925.34995K562EIF4G2
chr117446058474460657+intron-Distal3.982413.60235HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF169 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF169 is not available on ENCORE database.

  • 91 RBPs can affect the levels of RNF169.  








The Knockdown/knockout RNA-Seq assay for RNF169 is not available on ENCORE database.





91 RBPs can affect the gene expression of RNF169 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF169ENSG00000166439.5467.63940682.59840-0.545606.626405.76730HepG2ACO1
RNF169ENSG00000166439.5549.72580685.83140-0.319102.534301.79660HepG2AKAP8L
RNF169ENSG00000166439.5535.29590792.59240-0.566204.302503.33180HepG2ASCC1
RNF169ENSG00000166439.5335.24350445.64590-0.410702.214701.67380HepG2BOP1
RNF169ENSG00000166439.5540.66020823.45550-0.607004.010802.82440HepG2CCAR1
RNF169ENSG00000166439.5444.36770682.48120-0.619008.500707.45950HepG2CKAP4
RNF169ENSG00000166439.5287.61260690.54270-1.2636010.926409.44140HepG2CNOT7
RNF169ENSG00000166439.5408.47470652.89710-0.676608.119707.12770HepG2CELF1
RNF169ENSG00000166439.5578.00680702.03440-0.280502.434501.73310HepG2DAZAP1
RNF169ENSG00000166439.5332.51890503.51840-0.598604.516503.67350HepG2DDX21
RNF169ENSG00000166439.5518.52950917.62870-0.823508.400007.35990HepG2DDX3X
RNF169ENSG00000166439.5276.24110428.38550-0.633003.202702.37970HepG2DDX55
RNF169ENSG00000166439.5504.54650788.15610-0.643504.776803.98510HepG2DDX6
RNF169ENSG00000166439.5358.35240486.26480-0.440403.261802.50270HepG2DNAJC21
RNF169ENSG00000166439.5300.54010481.94760-0.681307.963606.93000HepG2DNAJC2
RNF169ENSG00000166439.5383.55580537.47360-0.486802.723701.80880HepG2EEF2
RNF169ENSG00000166439.5319.47160448.10350-0.488102.733501.63160HepG2EFTUD2
RNF169ENSG00000166439.5377.42860757.77870-1.0056011.088909.95020HepG2EIF2S1
RNF169ENSG00000166439.5269.13480436.33230-0.697104.036902.95760HepG2EIF3D
RNF169ENSG00000166439.5604.12270815.31250-0.432502.095601.49320HepG2EIF4B
RNF169ENSG00000166439.5253.83250389.92630-0.619304.515002.98570HepG2FAM120A
RNF169ENSG00000166439.5590.02830844.83380-0.517903.837703.03290HepG2FXR1
RNF169ENSG00000166439.5423.55670783.78820-0.887908.862007.70660HepG2G3BP1
RNF169ENSG00000166439.5413.77170639.30920-0.627703.605602.33070HepG2GRSF1
RNF169ENSG00000166439.5362.79740490.92310-0.436302.529501.90880HepG2HNRNPA1
RNF169ENSG00000166439.5608.08110462.551600.394503.311402.53270HepG2HNRNPF
RNF169ENSG00000166439.5501.08960639.50260-0.351903.086302.37730HepG2HNRNPL
RNF169ENSG00000166439.5333.93240506.22830-0.600204.681903.47980HepG2HNRNPM
RNF169ENSG00000166439.5307.32180542.44380-0.8197010.890909.75460HepG2HNRNPU
RNF169ENSG00000166439.5620.33400455.481200.445603.518402.70910HepG2IGF2BP1
RNF169ENSG00000166439.5616.05720796.73230-0.371002.196601.58660HepG2IGF2BP2
RNF169ENSG00000166439.5387.42170554.08980-0.516205.578704.56910HepG2ILF2
RNF169ENSG00000166439.5474.17800658.35200-0.473402.632201.47690HepG2KHDRBS1
RNF169ENSG00000166439.5465.79900623.99990-0.421804.263603.01120HepG2KIF1C
RNF169ENSG00000166439.5653.21740849.88310-0.379702.058101.50800HepG2MATR3
RNF169ENSG00000166439.5250.62670456.67770-0.865604.437503.12250HepG2METAP2
RNF169ENSG00000166439.5393.28810593.83510-0.594504.744203.70530HepG2MSI2
RNF169ENSG00000166439.5579.90720869.92300-0.585104.454103.65940HepG2NCBP2
RNF169ENSG00000166439.5586.46880392.432200.579504.093203.18870HepG2NSUN2
RNF169ENSG00000166439.5560.27560774.81670-0.467703.098702.33650HepG2PABPC4
RNF169ENSG00000166439.5409.39910536.93620-0.391203.023402.14150HepG2PARN
RNF169ENSG00000166439.5568.28830747.92330-0.396303.976603.27600HepG2PCBP1
RNF169ENSG00000166439.5787.11620606.419600.376202.579001.83000HepG2PRPF4
RNF169ENSG00000166439.5436.45950761.00820-0.8021012.6706011.66910HepG2PTBP1
RNF169ENSG00000166439.5525.53250705.41350-0.424704.058903.37030HepG2PUM1
RNF169ENSG00000166439.5398.14760695.27530-0.8043013.0392011.87150HepG2PUS1
RNF169ENSG00000166439.5346.19490529.88800-0.614102.386001.40240HepG2RCC2
RNF169ENSG00000166439.5590.66410846.95550-0.519906.161805.40870HepG2NELFE
RNF169ENSG00000166439.5265.12310424.54930-0.679305.028504.22720HepG2RPS19
RNF169ENSG00000166439.5301.02850426.13500-0.501402.641701.72410HepG2SERBP1
RNF169ENSG00000166439.5776.76080637.163900.285702.506501.83420HepG2SLBP
RNF169ENSG00000166439.5328.40660563.35450-0.7786010.773809.63740HepG2SMN1
RNF169ENSG00000166439.5396.28020632.05990-0.673504.459103.22300HepG2SMNDC1
RNF169ENSG00000166439.51500.23130941.845900.6715015.2595014.33250HepG2SRFBP1
RNF169ENSG00000166439.5630.59730827.03400-0.391203.940703.40120HepG2SRSF1
RNF169ENSG00000166439.5567.08880454.442100.319402.234801.60230HepG2SRSF7
RNF169ENSG00000166439.51010.71560817.778100.305503.232002.68760HepG2SSB
RNF169ENSG00000166439.5566.89310746.18370-0.396504.048603.32120HepG2SUCLG1
RNF169ENSG00000166439.51145.49120743.306000.623809.184008.25820HepG2TAF15
RNF169ENSG00000166439.5301.97280527.11460-0.803708.429907.64240HepG2TIAL1
RNF169ENSG00000166439.5264.72730531.79540-1.0064015.0750013.90800HepG2TRIM56
RNF169ENSG00000166439.5173.90050251.93680-0.534802.273101.58460HepG2UCHL5
RNF169ENSG00000166439.5526.41550748.29850-0.507406.090805.12160HepG2UPF1
RNF169ENSG00000166439.5513.06270722.45720-0.493805.017504.25160HepG2UTP3
RNF169ENSG00000166439.5400.30420621.41940-0.634503.827202.53100HepG2XPO5
RNF169ENSG00000166439.5445.90590682.20140-0.613503.707502.47910HepG2XRCC6
RNF169ENSG00000166439.5509.52430822.98920-0.6917012.2014011.25650HepG2ZNF622
RNF169ENSG00000166439.51363.427901628.89300-0.256702.602202.04870K562AGGF1
RNF169ENSG00000166439.51334.201801694.95110-0.345302.793002.13670K562AKAP8L
RNF169ENSG00000166439.51274.045201772.16220-0.476105.658103.79170K562APOBEC3C
RNF169ENSG00000166439.5655.19740848.05380-0.372202.370501.56890K562BOP1
RNF169ENSG00000166439.51268.076701946.57080-0.618309.850307.62220K562CCDC124
RNF169ENSG00000166439.51318.582401665.27470-0.336803.907602.58510K562CPEB4
RNF169ENSG00000166439.5609.23760901.68920-0.565605.909604.76770K562CPSF6
RNF169ENSG00000166439.5549.46740692.42960-0.333602.547001.53960K562CSTF2
RNF169ENSG00000166439.5714.221101145.30560-0.681309.418307.38560K562DDX3X
RNF169ENSG00000166439.51020.014801257.98620-0.302503.281201.95080K562EIF2S1
RNF169ENSG00000166439.5746.40340987.30020-0.403504.417803.53590K562EIF2S2
RNF169ENSG00000166439.5741.770301084.02290-0.547405.410804.20040K562FIP1L1
RNF169ENSG00000166439.5574.95620777.70710-0.435802.808301.88730K562FTO
RNF169ENSG00000166439.51015.74540755.625300.426704.095902.42810K562FUS
RNF169ENSG00000166439.5770.603801244.35880-0.6913012.3214011.13830K562FXR1
RNF169ENSG00000166439.5753.961501315.58600-0.8031012.4898010.86190K562GRSF1
RNF169ENSG00000166439.51140.454201557.15200-0.449304.898303.44630K562HNRNPL
RNF169ENSG00000166439.5565.21990891.63530-0.657605.552204.17340K562HNRNPM
RNF169ENSG00000166439.5813.187901218.66460-0.583608.662607.09270K562HNRNPU
RNF169ENSG00000166439.51000.386701469.68950-0.555005.948004.79410K562HSPD1
RNF169ENSG00000166439.5956.386701353.34440-0.500905.859304.44560K562MATR3
RNF169ENSG00000166439.5651.37260840.31030-0.367402.568901.72920K562METAP2
RNF169ENSG00000166439.51463.896802140.74150-0.548306.553104.83450K562MSI2
RNF169ENSG00000166439.5781.616501185.68020-0.6012010.507309.03730K562MTPAP
RNF169ENSG00000166439.52512.66310901.954701.4780012.481909.86010K562PABPN1
RNF169ENSG00000166439.5654.34760855.59640-0.386903.237502.36670K562POLR2G
RNF169ENSG00000166439.5869.854801230.59620-0.500504.756003.63750K562PPIG
RNF169ENSG00000166439.5864.058901317.46640-0.608605.751804.82260K562PTBP1
RNF169ENSG00000166439.51816.082902191.30720-0.271002.024701.32590K562PUF60
RNF169ENSG00000166439.51687.884302283.71660-0.436207.026505.47550K562PUM2
RNF169ENSG00000166439.5809.066901680.82600-1.0548017.8967016.55130K562PUS1
RNF169ENSG00000166439.5943.167801231.50310-0.384802.812401.42390K562RBM34
RNF169ENSG00000166439.5381.28400624.66640-0.712206.931405.36020K562RCC2
RNF169ENSG00000166439.5805.604301163.25730-0.530003.336802.22840K562RPS3
RNF169ENSG00000166439.51483.77410824.706800.847203.256201.92230K562SF1
RNF169ENSG00000166439.5820.051401291.52340-0.655308.962307.69980K562SRSF1
RNF169ENSG00000166439.5874.021401307.17680-0.580705.999304.92870K562TARDBP
RNF169ENSG00000166439.5942.519701260.90100-0.419904.272103.22190K562TIA1
RNF169ENSG00000166439.5488.80990658.70240-0.430402.516601.62830K562TIAL1
RNF169ENSG00000166439.51667.322101225.659100.443905.508304.37840K562U2AF2
RNF169ENSG00000166439.51033.277001396.83490-0.434904.145803.28410K562UPF1
RNF169ENSG00000166439.5923.001601242.92040-0.429306.513205.26690K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF169 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RNF169 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RNF169 is not avaliable on ENCORE database.