PRR3

General Information

Gene Name       : PRR3
Gene ID             : ENSG00000204576.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRR3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRR3ENSG00000204576.1128.1525.9727.06ENCSR000AEF
HepG2PRR3ENSG00000204576.1118.6723.7421.20ENCSR985KAT
K562PRR3ENSG00000204576.1137.6840.0738.88ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: PRR3ENCSR191PTZPRR3cell-free sampleReleasedENCSR278BSO  






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PRR3Ribo-STAMP-293TshRNAPRR3-BGRSLV04-39,PRR3-BGRSLV04-40NT-BGRSLV04-1,NT-BGRSLV04-2,SubmittedENCORE2


  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
PRR3PRR3ReleasedENCODE3


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRR3 is not avaliable on ENCORE database.


  • The binding motifs of PRR3

    • Trulli

Proteins bound to RNA
  • PRR3 RNA is bound by 10 proteins.  







eCLIP assay for PRR3 is not avaliable on ENCORE database.





10 proteins are bound to PRR3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63053119930531309+3'-UTR3.982823.61671HepG2PABPN1
chr63053058330530644+3'-UTR4.222854.15208K562RBM15
chr63052522330525281+CDS,intron-Proximal3.695075.73990HepG2PRPF8
chr63052591530525974+CDS,intron-Distal,intron-Proximal3.182613.34034HepG2HLTF
chr63052955830529663+CDS,intron-Proximal3.442145.67580HepG2U2AF2
chr63052990030529954+CDS,intron-Proximal5.077076.44303K562AQR
chr63052522230525354+CDS,intron-Distal,intron-Proximal3.012414.79706HepG2PRPF4
chr63052631330526346+intron-Distal4.086283.53509HepG2HLTF
chr63052934930529446+intron-Distal,intron-Proximal3.444663.66710HepG2GTF2F1
chr63052935230529420+intron-Distal,intron-Proximal3.025243.18011HepG2FAM120A
chr63052933330529450+intron-Distal,intron-Proximal4.957746.75874HepG2PRPF4
chr63052934430529467+intron-Distal,intron-Proximal3.255694.32637HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRR3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRR3 is not available on ENCORE database.

  • 73 RBPs can affect the levels of PRR3.  








The Knockdown/knockout RNA-Seq assay for PRR3 is not available on ENCORE database.





73 RBPs can affect the gene expression of PRR3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRR3ENSG00000204576.7442.69530321.152700.463002.701601.64270HepG2AATF
PRR3ENSG00000204576.7743.13710437.034000.765805.942905.19750HepG2AKAP1
PRR3ENSG00000204576.7539.90490838.08480-0.634402.317201.76430HepG2BOP1
PRR3ENSG00000204576.7706.77520491.622600.523604.388402.85760HepG2BUD13
PRR3ENSG00000204576.71157.98340806.222100.522303.421702.32680HepG2CCAR1
PRR3ENSG00000204576.7595.85630380.971000.645208.145807.12200HepG2CKAP4
PRR3ENSG00000204576.7240.81030345.72900-0.521702.470501.90860HepG2EIF2S1
PRR3ENSG00000204576.7668.02190497.769500.424303.096101.85400HepG2EIF2S2
PRR3ENSG00000204576.7576.82030371.985100.632803.473802.70640HepG2EIF4B
PRR3ENSG00000204576.7819.99740671.511600.288102.038701.50530HepG2ETF1
PRR3ENSG00000204576.7552.41240872.32050-0.659102.957702.29820HepG2GPKOW
PRR3ENSG00000204576.7588.60530446.988300.397002.352701.75280HepG2HNRNPA1
PRR3ENSG00000204576.7864.24620497.205600.797509.068207.86810HepG2HNRNPC
PRR3ENSG00000204576.7764.18930556.828300.456605.596604.66720HepG2HNRNPL
PRR3ENSG00000204576.7527.29080832.46280-0.658802.990402.33970HepG2HNRNPLL
PRR3ENSG00000204576.7611.86890457.153200.420402.862601.89590HepG2HNRNPM
PRR3ENSG00000204576.7539.11170385.596200.483402.776402.12070HepG2MAGOH
PRR3ENSG00000204576.7541.62620387.762100.482002.546401.93900HepG2MATR3
PRR3ENSG00000204576.7623.55140450.292800.469503.430402.07500HepG2NAA15
PRR3ENSG00000204576.7573.69270396.902500.531403.191402.51360HepG2NCBP2
PRR3ENSG00000204576.7193.44060334.60990-0.790603.573602.55490HepG2PABPC1
PRR3ENSG00000204576.7508.79660353.496600.525303.180802.40850HepG2PABPC4
PRR3ENSG00000204576.7672.63780431.011000.642006.363205.47140HepG2QKI
PRR3ENSG00000204576.7792.99610561.244400.498604.870004.23120HepG2RBM22
PRR3ENSG00000204576.7463.19340723.45860-0.643305.589204.66880HepG2RPLP0
PRR3ENSG00000204576.7167.75040276.60620-0.721503.481402.61350HepG2RRP9
PRR3ENSG00000204576.7837.34380632.345900.405002.011401.43480HepG2SF3A3
PRR3ENSG00000204576.7520.63620414.338300.329402.142201.61190HepG2SF3B4
PRR3ENSG00000204576.7959.61000432.480801.1497025.6850024.56350HepG2SRSF1
PRR3ENSG00000204576.7991.40380566.808200.806508.852707.72330HepG2U2AF1
PRR3ENSG00000204576.7421.07960598.38160-0.507002.826901.98130HepG2UBE2L3
PRR3ENSG00000204576.7831.79230541.424600.619408.724407.75630HepG2UTP3
PRR3ENSG00000204576.7445.46820616.76610-0.469405.072004.38690HepG2ZNF622
PRR3ENSG00000204576.71174.773101931.40860-0.717302.814201.57870K562ABCF1
PRR3ENSG00000204576.7476.52370686.96810-0.527704.497303.80500K562AGGF1
PRR3ENSG00000204576.7380.85450714.80380-0.9083011.189509.75480K562AKAP8L
PRR3ENSG00000204576.7749.103701612.97000-1.1065013.3909011.41460K562BOP1
PRR3ENSG00000204576.7980.21430605.573300.694707.630005.65120K562CCAR1
PRR3ENSG00000204576.7622.65670821.02190-0.399003.645702.26710K562CCDC124
PRR3ENSG00000204576.71021.410601715.06790-0.7477012.9401011.23360K562CPSF6
PRR3ENSG00000204576.71180.180601521.54220-0.366503.652002.52890K562CELF1
PRR3ENSG00000204576.7283.49260377.65820-0.413802.373901.41090K562DDX3X
PRR3ENSG00000204576.72123.389501353.358800.6497013.0169011.71300K562DDX47
PRR3ENSG00000204576.7899.93360677.989800.408502.955401.57700K562DHX30
PRR3ENSG00000204576.7358.09400562.16470-0.650703.936802.37660K562EEF2
PRR3ENSG00000204576.71310.51200615.952001.089109.736607.82940K562EIF3A
PRR3ENSG00000204576.7635.41710445.298000.512804.627303.61050K562EIF3G
PRR3ENSG00000204576.7593.79260394.532700.589704.748903.67370K562EIF4A3
PRR3ENSG00000204576.71314.737901745.00610-0.408502.720001.87380K562FMR1
PRR3ENSG00000204576.7947.769701479.03500-0.642005.143403.85370K562FTO
PRR3ENSG00000204576.7285.34620393.67900-0.464302.926301.54430K562FUS
PRR3ENSG00000204576.7611.95450410.292800.576704.212903.48920K562FXR1
PRR3ENSG00000204576.7826.776801637.48210-0.9859018.4731016.34310K562GPKOW
PRR3ENSG00000204576.7923.089001182.97900-0.357902.799602.04030K562GRSF1
PRR3ENSG00000204576.7461.90700728.22960-0.656802.842101.60270K562HNRNPA2B1
PRR3ENSG00000204576.71076.31830783.343500.458304.322303.59270K562HNRNPC
PRR3ENSG00000204576.71848.227501222.955600.595705.766804.18950K562HNRNPL
PRR3ENSG00000204576.7352.04560486.71200-0.467302.370001.44030K562IGF2BP2
PRR3ENSG00000204576.7526.37320758.64730-0.527304.430203.35220K562KIF1C
PRR3ENSG00000204576.7966.416601398.16790-0.532803.585602.50880K562KRR1
PRR3ENSG00000204576.71006.682901319.05150-0.389902.903701.74040K562MSI2
PRR3ENSG00000204576.7408.52580595.69050-0.544103.011402.08400K562NAA15
PRR3ENSG00000204576.7331.64790636.94150-0.941504.730003.34000K562PABPN1
PRR3ENSG00000204576.7688.711401044.25800-0.600505.238204.09100K562PCBP3
PRR3ENSG00000204576.7511.85360800.97430-0.646007.464306.17040K562POLR2G
PRR3ENSG00000204576.7953.34070702.352000.440703.434002.41210K562PSIP1
PRR3ENSG00000204576.7267.37940709.01550-1.4069020.4603019.01360K562PUS1
PRR3ENSG00000204576.7461.23730690.72410-0.582604.962304.18910K562RBM15
PRR3ENSG00000204576.7327.42460476.50210-0.541303.809402.81110K562RBM22
PRR3ENSG00000204576.7355.42730540.44900-0.604603.314901.85640K562RRP9
PRR3ENSG00000204576.7930.52690713.710000.382602.989401.86380K562SAFB
PRR3ENSG00000204576.7330.17270582.46860-0.819003.276101.93790K562SF1
PRR3ENSG00000204576.71044.819001557.25130-0.575702.782701.80600K562SF3B1
PRR3ENSG00000204576.7425.41720668.97730-0.653102.461901.33160K562SNRNP200
PRR3ENSG00000204576.7801.50400607.476100.399802.814401.77910K562SRFBP1
PRR3ENSG00000204576.7912.908001139.81430-0.320302.322801.45680K562SRPK2
PRR3ENSG00000204576.7722.48750487.178000.568405.318904.34420K562SRSF1
PRR3ENSG00000204576.7431.10590800.16850-0.892304.310702.37440K562SUPT6H
PRR3ENSG00000204576.7367.34770511.78580-0.478402.578801.60090K562SUPV3L1
PRR3ENSG00000204576.71174.51520803.408000.547806.847705.54400K562SYNCRIP
PRR3ENSG00000204576.7506.44990359.005300.496302.798101.69820K562U2AF1
PRR3ENSG00000204576.7397.92800541.65280-0.444902.542801.57170K562UCHL5
PRR3ENSG00000204576.71005.670801364.20970-0.439902.780501.57520K562UTP3
PRR3ENSG00000204576.7621.12190959.91620-0.628004.350203.22930K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRR3 is not available on ENCORE database.





13 RBPs can affect the splicing of PRR3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRR3ENSG00000204576.7chr6+305291043052928530525926305259893052961030529901-0.437000.000000.00006excludedK562SRSF1
SEPRR3ENSG00000204576.7chr6+305259263052598930525092305252273052961030529901-0.240000.001120.02255excludedHepG2U2AF1
SEPRR3ENSG00000204576.7chr6+3052910430529285305250903052522730529610305299010.425000.000320.07523includedK562WDR43
SEPRR3ENSG00000204576.7chr6+305291043052928530525926305259893052961030529901-0.383000.000040.00668excludedHepG2QKI
SEPRR3ENSG00000204576.7chr6+3052592630525989305250923052522730529104305292850.199000.004150.04582includedHepG2U2AF2
SEPRR3ENSG00000204576.7chr6+305259263052598930525092305252273052961030529901-0.302000.000930.04838excludedHepG2PTBP1
SEPRR3ENSG00000204576.7chr6+305259263052598930525092305252273052961030529901-0.232000.003860.07303excludedHepG2SRSF1
SEPRR3ENSG00000204576.7chr6+3052910430529285305259263052598930529610305299010.301000.000010.01370includedK562PUM2
SEPRR3ENSG00000204576.7chr6+3052592630525989305250923052522730529104305292850.217000.000720.02953includedK562HNRNPU
SEPRR3ENSG00000204576.7chr6+3052592630525989305250923052522730529610305299010.296000.000220.09841includedHepG2SMNDC1
SEPRR3ENSG00000204576.7chr6+3052910430529285305250903052522730529610305299010.427000.000110.07903includedHepG2YBX3
SEPRR3ENSG00000204576.7chr6+3052910430529285305250903052522730529610305299010.319000.001710.02988includedK562HNRNPC
SEPRR3ENSG00000204576.7chr6+305259263052598930525092305252273052910430529285-0.239000.000020.00073excludedK562HNRNPC
A5SSPRR3ENSG00000204576.7chr6+3052505630525297305250563052522730529610305299010.218000.000020.00056longerK562AQR
MXEPRR3ENSG00000204576.7chr6+3052592630525989305290863052928530525092305252273052961030529901-0.111000.000730.014692includedK562DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRR3 is not avaliable on ENCORE database.