Experiment Information (Status: Released)

RBP	PRR3
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	31

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PRR3-1300	RBNS	20-20	1300	PRR3_1300.fastq.gz
PRR3-20	RBNS	20-20	20	PRR3_20.fastq.gz
PRR3-320	RBNS	20-20	320	PRR3_320.fastq.gz
PRR3-5	RBNS	20-20	5	PRR3_5.fastq.gz
PRR3-80	RBNS	20-20	80	PRR3_80.fastq.gz
PRR3-input	CN	20-20	0	PRR3_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PRR3	ENCSR191PTZ	experiment	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-12	ENCODE3			8070
chris-burge:lib-PRR3-1	ENCLB897XGD	library	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-12	ENCODE3			8388
chris-burge:lib-PRR3-2	ENCLB461QZU	library	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-12	ENCODE3			8389
chris-burge:lib-PRR3-3	ENCLB279FIK	library	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-12	ENCODE3			8390
chris-burge:lib-PRR3-4	ENCLB509VFW	library	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-12	ENCODE3			8391
chris-burge:lib-PRR3-5	ENCLB096DZS	library	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-12	ENCODE3			8392
chris-burge:PRR3_1300.fastq.gz	ENCFF016DMQ	file_fastq	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			8807
chris-burge:PRR3_20.fastq.gz	ENCFF859IFZ	file_fastq	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			8808
chris-burge:PRR3_320.fastq.gz	ENCFF305FZN	file_fastq	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			8809
chris-burge:PRR3_5.fastq.gz	ENCFF002RAY	file_fastq	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			8810
chris-burge:PRR3_80.fastq.gz	ENCFF584IYE	file_fastq	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			8811
chris-burge:PRR3_enrichment_R.4mers.txt	ENCFF492NKP	file_enrichment	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9278
chris-burge:PRR3_enrichment_R.5mers.txt	ENCFF466EQG	file_enrichment	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9279
chris-burge:PRR3_enrichment_R.6mers.txt	ENCFF373IHG	file_enrichment	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9280
chris-burge:PRR3_enrichment_R.7mers.txt	ENCFF744ZDN	file_enrichment	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9281
chris-burge:PRR3_est_binding_frac.4mers.txt	ENCFF897OZY	file_library-fraction	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9282
chris-burge:PRR3_est_binding_frac.5mers.txt	ENCFF188LWK	file_library-fraction	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9283
chris-burge:PRR3_est_binding_frac.6mers.txt	ENCFF281FSW	file_library-fraction	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9284
chris-burge:PRR3_est_binding_frac.7mers.txt	ENCFF245OMP	file_library-fraction	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9285
chris-burge:PRR3.logo_1.PWM.txt	ENCFF688ATJ	file_enrichment	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9286
chris-burge:PRR3.logo_2.PWM.txt	ENCFF672EUE	file_enrichment	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9287
chris-burge:PRR3.logo_3.PWM.txt	ENCFF984XGE	file_enrichment	RNA Bind-n-Seq	PRR3		Yes	Released	2022-07-14	ENCODE3			9288

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PRR3.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
PRR3_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
PRR3_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
PRR3_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
PRR3_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
PRR3_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
PRR3_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
PRR3_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PRR3_1300.fastq.gz,PRR3_20.fastq.gz,PRR3_320.fastq.gz,PRR3_5.fastq.gz,PRR3_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
PRR3_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PRR3_1300.fastq.gz,PRR3_20.fastq.gz,PRR3_320.fastq.gz,PRR3_5.fastq.gz,PRR3_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
PRR3_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PRR3_1300.fastq.gz,PRR3_20.fastq.gz,PRR3_320.fastq.gz,PRR3_5.fastq.gz,PRR3_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
PRR3_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PRR3_1300.fastq.gz,PRR3_20.fastq.gz,PRR3_320.fastq.gz,PRR3_5.fastq.gz,PRR3_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
PRR3_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PRR3_1300.fastq.gz,PRR3_20.fastq.gz,PRR3_320.fastq.gz,PRR3_5.fastq.gz,PRR3_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
PRR3_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PRR3_1300.fastq.gz,PRR3_20.fastq.gz,PRR3_320.fastq.gz,PRR3_5.fastq.gz,PRR3_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
PRR3_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PRR3_1300.fastq.gz,PRR3_20.fastq.gz,PRR3_320.fastq.gz,PRR3_5.fastq.gz,PRR3_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
PRR3_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PRR3_1300.fastq.gz,PRR3_20.fastq.gz,PRR3_320.fastq.gz,PRR3_5.fastq.gz,PRR3_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3