PPP3CB

General Information

Gene Name       : PPP3CB
Gene ID             : ENSG00000107758.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PPP3CB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PPP3CBENSG00000107758.1538.2631.5534.91ENCSR000AEF
HepG2PPP3CBENSG00000107758.1510.1217.0613.59ENCSR985KAT
K562PPP3CBENSG00000107758.1516.3318.5917.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PPP3CB is not avaliable on ENCORE database.



Proteins bound to RNA
  • PPP3CB RNA is bound by 11 proteins.  







eCLIP assay for PPP3CB is not avaliable on ENCORE database.





11 proteins are bound to PPP3CB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr107519621175196269-3'-UTR,intron-Distal4.424995.02888K562KHSRP
chr107520376675203878-3'-UTR,intron-Distal,intron-Proximal3.494415.86177HepG2U2AF2
chr107519714875197238-3'-UTR,intron-Distal4.856148.57760K562KHSRP
chr107520398275204071-3'-UTR,intron-Distal3.119493.31157HepG2KHSRP
chr107523915775239228-5'-UTR,CDS,intron-Distal3.144953.40321HepG2GRWD1
chr107523915875239252-5'-UTR,CDS,intron-Distal3.948094.13344K562GRWD1
chr107525551375255572-5'-UTR,CDS,intron-Distal3.424784.54206HepG2PRPF8
chr107523907475239159-5'-UTR,CDS,intron-Distal,intron-Proximal3.400319.04720K562ZNF622
chr107520453475204582-CDS,intron-Distal,intron-Proximal4.788095.56813HepG2PPIG
chr107523122575231324-CDS,intron-Distal,intron-Proximal3.085473.71296HepG2BCLAF1
chr107523067075230722-CDS,intron-Distal3.160256.86395HepG2BCLAF1
chr107523468175234778-CDS,intron-Distal3.676665.15500HepG2BCLAF1
chr107523826475238342-CDS,intron-Distal3.372824.34695HepG2BCLAF1
chr107523089975230958-CDS,intron-Distal3.433525.00751HepG2BCLAF1
chr107520624575206302-CDS,intron-Distal,intron-Proximal4.303726.92541HepG2PPIG
chr107523044575230466-CDS,intron-Distal3.372823.28366HepG2BCLAF1
chr107523788875237957-intron-Distal3.553135.20123K562KHSRP
chr107522995175230048-intron-Distal3.774934.36528HepG2U2AF2
chr107520802275208095-intron-Distal3.930237.69621K562KHSRP
chr107520291075202969-intron-Distal4.352614.39969K562TARDBP
chr107520298175203064-intron-Distal3.696039.67032HepG2PTBP1
chr107520297775203027-intron-Distal6.0443713.57230K562PTBP1
chr107520852175208653-intron-Distal,intron-Proximal4.066483.97888HepG2HNRNPL
chr107523818875238255-intron-Distal,intron-Proximal4.736505.70555K562PRPF8
chr107520289375202979-intron-Distal5.674539.85976HepG2PTBP1
chr107520809575208156-intron-Distal4.120298.75493K562KHSRP
chr107521273475212808-intron-Distal3.053895.34873K562KHSRP
chr107521407975214144-intron-Distal,intron-Proximal5.6206711.11361K562PRPF8
chr107519982275199933-intron-Distal3.898575.14628K562TARDBP
chr107523681975236864-intron-Distal,intron-Proximal3.927073.35850HepG2TIAL1
chr107523897975239031-intron-Distal,intron-Proximal4.313804.76003K562KHSRP
chr107523004075230094-intron-Distal3.710036.41553K562KHSRP
chr107520291775202977-intron-Distal7.0683325.83517K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PPP3CB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PPP3CB is not available on ENCORE database.

  • 67 RBPs can affect the levels of PPP3CB.  








The Knockdown/knockout RNA-Seq assay for PPP3CB is not available on ENCORE database.





67 RBPs can affect the gene expression of PPP3CB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PPP3CBENSG00000107758.11755.994401110.73960-0.555104.888803.87620HepG2CIRBP
PPP3CBENSG00000107758.11541.64840801.66570-0.565608.206507.17910HepG2CKAP4
PPP3CBENSG00000107758.11508.07830672.99860-0.405602.796402.11550HepG2DDX21
PPP3CBENSG00000107758.11457.06380712.26120-0.640003.817402.92400HepG2DDX55
PPP3CBENSG00000107758.11589.61020703.36160-0.254502.096701.51410HepG2DNAJC2
PPP3CBENSG00000107758.11473.12660700.46060-0.566105.272003.68620HepG2EIF2S2
PPP3CBENSG00000107758.11856.229201246.37180-0.541704.737003.84840HepG2FXR1
PPP3CBENSG00000107758.11791.933101156.10250-0.545804.415203.58300HepG2G3BP1
PPP3CBENSG00000107758.11313.03720546.41960-0.803707.279305.84630HepG2GEMIN5
PPP3CBENSG00000107758.11582.67880825.62490-0.502802.692701.59550HepG2GRSF1
PPP3CBENSG00000107758.11535.28580716.44230-0.420502.501301.88400HepG2HNRNPA1
PPP3CBENSG00000107758.11843.787701062.38320-0.332403.608902.56450HepG2HNRNPA2B1
PPP3CBENSG00000107758.11806.911001053.15780-0.384205.501504.57910HepG2HNRNPL
PPP3CBENSG00000107758.11586.21120791.63610-0.433404.736303.96070HepG2HNRNPU
PPP3CBENSG00000107758.11910.697701175.12080-0.367802.400101.76620HepG2IGF2BP2
PPP3CBENSG00000107758.11677.569201246.80770-0.8798010.754709.48610HepG2MAGOH
PPP3CBENSG00000107758.11819.782301253.75800-0.612905.186904.34760HepG2MATR3
PPP3CBENSG00000107758.11403.98100653.83690-0.694602.939101.80950HepG2NONO
PPP3CBENSG00000107758.11528.13440815.11640-0.626103.210602.24980HepG2PABPC1
PPP3CBENSG00000107758.11473.84900682.85760-0.527205.737704.66610HepG2PRPF4
PPP3CBENSG00000107758.11287.76930549.67190-0.933707.538406.28190HepG2PRPF8
PPP3CBENSG00000107758.11820.278501065.75180-0.377704.123403.48550HepG2PTBP1
PPP3CBENSG00000107758.11832.223001094.24820-0.394903.587902.92060HepG2PUF60
PPP3CBENSG00000107758.11838.313001161.53280-0.470504.768004.03370HepG2PUM1
PPP3CBENSG00000107758.11785.761501160.72160-0.562905.380104.45900HepG2PUM2
PPP3CBENSG00000107758.111496.606101154.263400.374604.026503.29270HepG2QKI
PPP3CBENSG00000107758.11657.898301047.55770-0.671108.472007.34130HepG2RBM25
PPP3CBENSG00000107758.11485.04900738.39770-0.606303.703002.47450HepG2RCC2
PPP3CBENSG00000107758.11975.782801186.09030-0.281602.724402.18650HepG2NELFE
PPP3CBENSG00000107758.111149.70960693.411200.729405.148003.88250HepG2RPS10
PPP3CBENSG00000107758.11387.25900597.11450-0.624705.409204.58240HepG2RPS19
PPP3CBENSG00000107758.111043.56810649.356400.684307.436606.32940HepG2SF3B1
PPP3CBENSG00000107758.11606.80160822.14270-0.438205.596104.73320HepG2SMN1
PPP3CBENSG00000107758.11730.059801158.18160-0.6658012.2216011.37900HepG2SRSF1
PPP3CBENSG00000107758.11856.547801080.33890-0.334903.888303.16790HepG2SRSF5
PPP3CBENSG00000107758.111147.99670942.234200.284903.007302.43680HepG2SRSF9
PPP3CBENSG00000107758.111395.532301163.054800.262803.007202.47730HepG2SSB
PPP3CBENSG00000107758.11545.54850778.55960-0.513103.151401.97220HepG2STIP1
PPP3CBENSG00000107758.11928.97470659.876900.493302.523401.37620HepG2SUB1
PPP3CBENSG00000107758.11795.005301228.70440-0.6281013.0889011.90210HepG2SUCLG1
PPP3CBENSG00000107758.11418.30370769.24210-0.8789012.9350011.99070HepG2TIAL1
PPP3CBENSG00000107758.11431.24250776.09740-0.8477014.8734013.71330HepG2TRIM56
PPP3CBENSG00000107758.11548.63650797.58320-0.539803.943303.19860HepG2U2AF1
PPP3CBENSG00000107758.11297.03550732.53850-1.302304.455503.19090HepG2U2AF2
PPP3CBENSG00000107758.11669.39580814.76020-0.283502.425201.76430HepG2UPF1
PPP3CBENSG00000107758.11448.98470786.61990-0.8090012.7740011.62860HepG2UTP3
PPP3CBENSG00000107758.11853.54340673.886000.340903.569302.82180HepG2ZC3H8
PPP3CBENSG00000107758.111685.320501332.845300.338402.628301.44590K562ABCF1
PPP3CBENSG00000107758.111046.468901232.34850-0.235902.251301.73100K562AGGF1
PPP3CBENSG00000107758.111047.680601282.28890-0.291502.173201.59180K562AKAP8L
PPP3CBENSG00000107758.11826.636501506.81200-0.8662012.7212011.59510K562AQR
PPP3CBENSG00000107758.11504.83320696.42990-0.464203.800502.53600K562CSTF2
PPP3CBENSG00000107758.112864.412602092.892000.452606.932405.40800K562CELF1
PPP3CBENSG00000107758.11804.742901325.50830-0.7199014.9875013.58700K562DDX47
PPP3CBENSG00000107758.11249.07430379.59020-0.607902.448101.50680K562EIF3A
PPP3CBENSG00000107758.11577.29790773.51360-0.422103.727802.81380K562EIF3G
PPP3CBENSG00000107758.11500.59260651.21010-0.379502.736501.45710K562EWSR1
PPP3CBENSG00000107758.111059.61720807.174900.392502.165501.55100K562G3BP2
PPP3CBENSG00000107758.11605.85710760.98830-0.328902.072301.54510K562HNRNPC
PPP3CBENSG00000107758.111061.05330788.110900.428902.914801.95620K562HNRNPM
PPP3CBENSG00000107758.111595.284101299.000900.296302.116501.41730K562HSPD1
PPP3CBENSG00000107758.11758.328801108.40210-0.547606.197704.91770K562MAGOH
PPP3CBENSG00000107758.11762.93230986.27060-0.370402.751001.77330K562PCBP2
PPP3CBENSG00000107758.11869.67710691.071900.331502.508801.74830K562POLR2G
PPP3CBENSG00000107758.111043.077801239.08600-0.248402.116701.58490K562RBM15
PPP3CBENSG00000107758.11802.642801032.77590-0.363702.736901.90140K562RBM22
PPP3CBENSG00000107758.11473.47390622.39950-0.394602.576001.62280K562RCC2
PPP3CBENSG00000107758.11584.81240771.48940-0.399702.062401.36210K562RPS19
PPP3CBENSG00000107758.11545.76150839.79700-0.621807.347405.91160K562SF3B4
PPP3CBENSG00000107758.11782.39480996.86580-0.349502.485101.49680K562SRSF5
PPP3CBENSG00000107758.11474.76920656.25640-0.467002.866901.91480K562TIAL1
PPP3CBENSG00000107758.11459.33140697.07860-0.601805.117003.73360K562TRIM56
PPP3CBENSG00000107758.11490.38430782.95130-0.675005.496403.84920K562U2AF1
PPP3CBENSG00000107758.11592.04780808.44280-0.449404.073503.09990K562U2AF2
PPP3CBENSG00000107758.111279.46390976.934900.389102.468701.33960K562UTP3
PPP3CBENSG00000107758.11676.84940934.29780-0.465006.312505.08480K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PPP3CB is not available on ENCORE database.





14 RBPs can affect the splicing of PPP3CB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPPP3CBENSG00000107758.11chr10-751996297519965975197955751981787520448275204580-0.344000.000350.09110excludedK562IGF2BP2
SEPPP3CBENSG00000107758.11chr10-7519962975199659751979557519817875204482752045800.238000.000030.00403includedHepG2RBM22
SEPPP3CBENSG00000107758.11chr10-752044827520458075196563751981787520624975206334-0.164000.000830.01756excludedHepG2U2AF1
SEPPP3CBENSG00000107758.11chr10-7519962975199659751969967519817875204482752045800.292000.000350.04914includedHepG2HNRNPM
SEPPP3CBENSG00000107758.11chr10-751996297519965975197955751981787520448275204580-0.500000.000000.00040excludedHepG2DDX59
SEPPP3CBENSG00000107758.11chr10-7519962975199659751979557519817875204482752045800.354000.000370.03696includedHepG2QKI
SEPPP3CBENSG00000107758.11chr10-751996297519965975196996751981787520448275204580-0.485000.001700.02204excludedHepG2U2AF2
SEPPP3CBENSG00000107758.11chr10-752304447523053975227310752274367523064475230722-0.108000.000020.00042excludedK562AQR
SEPPP3CBENSG00000107758.11chr10-752346767523478875231225752313717523825675238381-0.056000.000420.00588excludedK562AQR
SEPPP3CBENSG00000107758.11chr10-7519962975199659751979557519817875204482752045800.524000.000000.00001includedHepG2PTBP1
SEPPP3CBENSG00000107758.11chr10-751996297519965975197955751981787520448275204580-0.349000.000140.01426excludedHepG2FTO
SEPPP3CBENSG00000107758.11chr10-7519962975199659751979557519817875204482752045800.322000.000600.02910includedHepG2MATR3
SEPPP3CBENSG00000107758.11chr10-7523691575236969752346767523478875238256752383810.051000.000590.01464includedK562U2AF1
SEPPP3CBENSG00000107758.11chr10-752304447523053975227310752274367523064475230722-0.101000.002060.04047excludedK562U2AF1
SEPPP3CBENSG00000107758.11chr10-752346767523478875231225752313717523825675238381-0.053000.006000.09294excludedK562U2AF1
SEPPP3CBENSG00000107758.11chr10-7519962975199659751969967519817875204482752045800.403000.000000.00020includedHepG2IGF2BP3
SEPPP3CBENSG00000107758.11chr10-751996297519965975197955751981787520448275204580-0.525000.001340.02563excludedK562U2AF2
SEPPP3CBENSG00000107758.11chr10-752304447523053975227310752274367523064475230722-0.118000.000620.01345excludedK562U2AF2
SEPPP3CBENSG00000107758.11chr10-751996297519965975197955751981787520448275204580-0.263000.003120.06553excludedK562AGGF1
SEPPP3CBENSG00000107758.11chr10-751996297519965975196996751981787520448275204580-0.276000.002610.08072excludedHepG2HNRNPC
A3SSPPP3CBENSG00000107758.11chr10-7520624975206334752062497520633175214169752142470.270000.000180.04489longerHepG2MATR3
A3SSPPP3CBENSG00000107758.11chr10-7523122575231406752312257523137175234676752347880.098000.000010.00013longerK562AQR
MXEPPP3CBENSG00000107758.11chr10-75199629751996597520448275204580751965637519817875206249752063340.132000.006670.087851includedHepG2U2AF1
MXEPPP3CBENSG00000107758.11chr10-7519962975199659752044827520458075196563751981787520624975206334-0.185000.003490.083062includedK562PTBP1
MXEPPP3CBENSG00000107758.11chr10-7519962975199659752044827520458075196563751981787520624975206334-0.194000.001150.041782includedHepG2PTBP1
MXEPPP3CBENSG00000107758.11chr10-75234676752347887523825675238419752312257523137175239074752392750.076000.000050.000621includedK562AQR
MXEPPP3CBENSG00000107758.11chr10-7519962975199659752044827520458075196563751981787520624975206334-0.192000.001430.012412includedK562AQR
MXEPPP3CBENSG00000107758.11chr10-7523122575231371752382567523838175227310752274367523907475239275-0.067000.000150.001732includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PPP3CB is not avaliable on ENCORE database.