PITRM1

General Information

Gene Name       : PITRM1
Gene ID             : ENSG00000107959.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PITRM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PITRM1ENSG00000107959.1530.0235.5132.77ENCSR000AEF
HepG2PITRM1ENSG00000107959.1525.5225.9125.71ENCSR985KAT
K562PITRM1ENSG00000107959.1543.6246.8345.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PITRM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PITRM1 RNA is bound by 16 proteins.  







eCLIP assay for PITRM1 is not avaliable on ENCORE database.





16 proteins are bound to PITRM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1031800643180128-3'-UTR,intron-Distal4.8320110.12999K562PABPC4
chr1031800783180130-3'-UTR,intron-Distal4.161294.72754K562YBX3
chr1031801283180190-3'-UTR,intron-Distal5.4517411.30955K562PABPC4
chr1031800263180078-3'-UTR,intron-Distal3.417805.11155K562YBX3
chr1031800843180144-3'-UTR,intron-Distal4.501968.11444HepG2SUB1
chr1031809773181035-3'-UTR,CDS,intron-Distal,intron-Proximal4.391594.70436K562RBM15
chr1031808413180893-3'-UTR,intron-Distal,intron-Proximal4.193853.81597K562RBM15
chr1032149053214971-5'-UTR,CDS,intron-Distal3.721154.46401K562DDX3X
chr1032001403200267-5'-UTR,CDS,intron-Distal,intron-Proximal4.813424.96013K562PRPF8
chr1031903813190451-CDS,intron-Distal4.881086.23448K562FXR2
chr1032122953212401-CDS,intron-Distal,intron-Proximal3.855527.22925K562DDX3X
chr1031934343193536-CDS,intron-Distal,intron-Proximal3.144953.39306HepG2GRWD1
chr1032075693207636-CDS,intron-Distal,intron-Proximal3.211684.07440K562PRPF8
chr1032090443209133-CDS,intron-Distal,intron-Proximal5.118606.22530K562AQR
chr1031904643190511-CDS,intron-Distal,intron-Proximal4.066314.15711K562AQR
chr1031864273186540-CDS,intron-Distal,intron-Proximal4.649519.08333HepG2PRPF8
chr1031934373193515-CDS,intron-Distal,intron-Proximal4.895155.56813HepG2PPIG
chr1031934523193521-CDS,intron-Distal3.168015.44868K562ZNF622
chr1031902023190259-CDS,intron-Distal,intron-Proximal4.148473.56076K562BUD13
chr1031894033189456-CDS,intron-Distal,intron-Proximal4.068367.40409K562BUD13
chr1032059453206055-CDS,intron-Distal3.018324.61826K562IGF2BP2
chr1031877413187790-CDS,intron-Distal,intron-Proximal5.514317.28294K562AQR
chr1031898923189942-CDS,intron-Distal,intron-Proximal3.520053.62357HepG2U2AF2
chr1031829733183058-CDS,intron-Distal,intron-Proximal5.230165.40008K562SF3B4
chr1032091643209233-CDS,intron-Distal4.106334.12025K562YBX3
chr1031988753198925-intron-Distal3.975333.89294K562KHSRP
chr1031863453186417-intron-Distal,intron-Proximal3.126273.89662K562BUD13
chr1031860203186088-intron-Distal,intron-Proximal3.228833.90146K562KHSRP
chr1031901143190177-intron-Distal,intron-Proximal5.356039.61540K562KHSRP
chr1031917203191808-intron-Distal,intron-Proximal4.118605.47926K562AQR
chr1031897193189764-intron-Distal,intron-Proximal4.085045.47926K562AQR
chr1031807193180789-intron-Distal,intron-Proximal4.212113.28989K562RBM15
chr1031863293186421-intron-Distal,intron-Proximal3.573687.78008K562PRPF8
chr1031900223190114-intron-Distal,intron-Proximal3.9227911.99276K562KHSRP
chr1031984463198526-intron-Distal3.787884.93120K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PITRM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PITRM1 is not available on ENCORE database.

  • 68 RBPs can affect the levels of PITRM1.  








The Knockdown/knockout RNA-Seq assay for PITRM1 is not available on ENCORE database.





68 RBPs can affect the gene expression of PITRM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PITRM1ENSG00000107959.111116.08640813.360100.456406.739005.87460HepG2ACO1
PITRM1ENSG00000107959.111323.21260991.126900.416802.599602.08320HepG2AKAP1
PITRM1ENSG00000107959.11814.860301124.90890-0.465203.860603.06040HepG2CPSF6
PITRM1ENSG00000107959.111424.515301096.633500.377304.867504.05870HepG2CELF1
PITRM1ENSG00000107959.11993.70000752.196200.401605.404804.29290HepG2DDX19B
PITRM1ENSG00000107959.11899.84140724.784800.312002.056301.46150HepG2DDX21
PITRM1ENSG00000107959.111703.19800949.363100.8431010.728909.57390HepG2DDX3X
PITRM1ENSG00000107959.11585.99840815.66730-0.477102.843902.21840HepG2DDX6
PITRM1ENSG00000107959.11600.44830755.99920-0.332302.679901.98430HepG2DNAJC21
PITRM1ENSG00000107959.111017.81420783.965800.376502.474801.60030HepG2EEF2
PITRM1ENSG00000107959.111304.64040866.317300.590604.890104.04390HepG2EIF4A3
PITRM1ENSG00000107959.111373.042001163.295400.239102.344701.56330HepG2EIF4G1
PITRM1ENSG00000107959.11461.58990690.85320-0.581805.203603.70730HepG2FASTKD2
PITRM1ENSG00000107959.111483.766601164.134400.349902.175601.48910HepG2FIP1L1
PITRM1ENSG00000107959.11642.853201126.83740-0.809703.463602.32310HepG2FTO
PITRM1ENSG00000107959.11896.42420572.686800.646306.716205.52260HepG2FUBP3
PITRM1ENSG00000107959.11842.63900513.653400.714004.831903.36990HepG2GRSF1
PITRM1ENSG00000107959.11993.779001292.57290-0.379205.125404.18670HepG2HNRNPF
PITRM1ENSG00000107959.111191.99310821.388200.537105.011004.09180HepG2HNRNPK
PITRM1ENSG00000107959.11798.876601074.03130-0.427005.963205.00620HepG2HNRNPL
PITRM1ENSG00000107959.111056.352901272.80790-0.268902.336501.66890HepG2IGF2BP1
PITRM1ENSG00000107959.111111.32850824.242900.431003.055402.35020HepG2IGF2BP2
PITRM1ENSG00000107959.11814.961401241.10090-0.606803.644102.52140HepG2MTPAP
PITRM1ENSG00000107959.111672.37010900.143400.8936011.5702010.31740HepG2NCBP2
PITRM1ENSG00000107959.11662.713801079.03230-0.703307.840406.62470HepG2NSUN2
PITRM1ENSG00000107959.11749.04270507.158100.562502.626201.76540HepG2PABPC1
PITRM1ENSG00000107959.111225.31180801.508600.612305.677404.65520HepG2PABPC4
PITRM1ENSG00000107959.11964.16630797.428500.273802.476001.89470HepG2PCBP1
PITRM1ENSG00000107959.11867.876701024.99400-0.240102.053601.37890HepG2PRPF4
PITRM1ENSG00000107959.11981.06720811.438900.273802.535302.00770HepG2PTBP1
PITRM1ENSG00000107959.11974.002401183.93440-0.281602.147601.55390HepG2PUM2
PITRM1ENSG00000107959.111198.84950878.754000.448005.082104.27490HepG2QKI
PITRM1ENSG00000107959.111034.900501241.11310-0.262102.167001.69350HepG2RBM22
PITRM1ENSG00000107959.11837.29770619.253100.435103.553702.86590HepG2RPS19
PITRM1ENSG00000107959.11968.51470621.503100.639906.299204.89550HepG2SERBP1
PITRM1ENSG00000107959.11999.310401340.22850-0.423502.088001.41260HepG2SNRNP70
PITRM1ENSG00000107959.111514.82160881.772400.7806018.5596017.56290HepG2SRSF1
PITRM1ENSG00000107959.11973.04430717.384900.439705.849105.09990HepG2SRSF9
PITRM1ENSG00000107959.11573.57480900.85400-0.651305.032804.16400HepG2SUPV3L1
PITRM1ENSG00000107959.11898.954201186.12110-0.399903.122902.35820HepG2TARDBP
PITRM1ENSG00000107959.11744.73190995.83270-0.419203.082202.42130HepG2U2AF1
PITRM1ENSG00000107959.11880.501201106.68400-0.329803.760602.96620HepG2UPF1
PITRM1ENSG00000107959.11560.29850824.92740-0.558103.017401.96840HepG2UPF2
PITRM1ENSG00000107959.11663.06670886.79180-0.419402.599001.89590HepG2XRN2
PITRM1ENSG00000107959.11857.957001011.55620-0.237602.245901.63240HepG2ZC3H8
PITRM1ENSG00000107959.112055.277101217.144200.7557016.7252015.66320HepG2ZNF622
PITRM1ENSG00000107959.111740.072502840.30690-0.7069010.915509.86270K562AQR
PITRM1ENSG00000107959.111511.753901762.49210-0.221402.319701.44220K562BCLAF1
PITRM1ENSG00000107959.111464.107601807.44420-0.303902.173201.40640K562BOP1
PITRM1ENSG00000107959.111060.561101680.96260-0.664508.252706.59810K562EFTUD2
PITRM1ENSG00000107959.111874.658202323.97700-0.310004.031903.18750K562EIF2S2
PITRM1ENSG00000107959.111277.415101799.63510-0.494503.926602.66720K562EIF3D
PITRM1ENSG00000107959.111884.537602280.98200-0.275402.525801.32020K562EXOSC5
PITRM1ENSG00000107959.111100.294401657.40350-0.591005.936204.54410K562FTO
PITRM1ENSG00000107959.111408.124101834.86550-0.381903.619802.71640K562GPKOW
PITRM1ENSG00000107959.112603.868803096.87470-0.250202.310801.61620K562GRSF1
PITRM1ENSG00000107959.111914.164202302.50900-0.266502.366201.37730K562HNRNPA1
PITRM1ENSG00000107959.111439.704002087.11660-0.535707.239806.31810K562HNRNPC
PITRM1ENSG00000107959.111788.819402549.80450-0.511409.128807.51790K562HNRNPU
PITRM1ENSG00000107959.111565.502701930.60370-0.302402.563501.75350K562MAGOH
PITRM1ENSG00000107959.112430.163602839.45750-0.224604.077103.19090K562NSUN2
PITRM1ENSG00000107959.111342.788901717.68680-0.355203.108702.07280K562PCBP2
PITRM1ENSG00000107959.111184.155601635.77440-0.466104.352203.41280K562PRPF8
PITRM1ENSG00000107959.111473.361901871.33060-0.345002.837401.91900K562PSIP1
PITRM1ENSG00000107959.112429.636901875.732100.373204.287003.47720K562PTBP1
PITRM1ENSG00000107959.113022.521804251.13420-0.492106.589605.32970K562PUF60
PITRM1ENSG00000107959.113668.977504521.73550-0.301503.705802.45560K562PUM1
PITRM1ENSG00000107959.113580.408604430.41850-0.307304.544203.30450K562PUM2
PITRM1ENSG00000107959.113668.227602855.773800.361102.526802.00260K562PUS1
PITRM1ENSG00000107959.112427.511902801.79780-0.206902.141401.41650K562SF3A3
PITRM1ENSG00000107959.111210.092001455.29530-0.266202.313101.53330K562SF3B4
PITRM1ENSG00000107959.111212.533701860.97800-0.618007.407306.18770K562TARDBP
PITRM1ENSG00000107959.111390.961301799.90010-0.371802.758601.82330K562TIAL1
PITRM1ENSG00000107959.11880.448701356.59610-0.623705.761504.06450K562U2AF1
PITRM1ENSG00000107959.11753.499801401.12870-0.8949017.6189015.53930K562U2AF2
PITRM1ENSG00000107959.112521.565203010.73580-0.255803.982403.13410K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PITRM1 is not available on ENCORE database.





17 RBPs can affect the splicing of PITRM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPITRM1ENSG00000107959.11chr10-320203932021283201105320123432023953202522-0.055000.000300.00782excludedK562SF3B4
SEPITRM1ENSG00000107959.11chr10-3185797318596731855803185693318648331865580.059000.000100.00278includedHepG2U2AF1
SEPITRM1ENSG00000107959.11chr10-318579731859673185580318569331864833186558-0.064000.000790.02208excludedHepG2HNRNPK
SEPITRM1ENSG00000107959.11chr10-3185797318596731855803185693318648331865580.137000.000110.00214includedHepG2U2AF2
SEPITRM1ENSG00000107959.11chr10-3190362319048331897633189929319181231919450.180000.000890.03580includedK562FXR1
SEPITRM1ENSG00000107959.11chr10-318579731859673185580318569331864833186558-0.055000.000630.04963excludedHepG2DDX3X
SEPITRM1ENSG00000107959.11chr10-319036231904833189763318992931918123191945-0.388000.000000.00000excludedK562PUS1
SEPITRM1ENSG00000107959.11chr10-3185797318592331855803185693318648331865580.074000.000960.06381includedHepG2HNRNPL
SEPITRM1ENSG00000107959.11chr10-320203932021283201105320123432023953202522-0.161000.000000.00000excludedK562U2AF2
SEPITRM1ENSG00000107959.11chr10-319036231904833189763318992931918123191945-0.701000.000000.00002excludedK562U2AF2
A3SSPITRM1ENSG00000107959.11chr10-3185580318592331855803185693318648331865580.293000.000190.07949longerHepG2DROSHA
A3SSPITRM1ENSG00000107959.11chr10-3199121319934631991213199256319962631997230.079000.001810.05994longerK562U2AF2
A3SSPITRM1ENSG00000107959.11chr10-3199121319934631991213199256319962631997230.087000.000540.03179longerK562SF3B4
A3SSPITRM1ENSG00000107959.11chr10-3185580318592331855803185693318648331865580.209000.000000.00000longerHepG2U2AF2
A3SSPITRM1ENSG00000107959.11chr10-320760432077193207604320767532084203208572-0.517000.000000.00000shorterHepG2U2AF2
A3SSPITRM1ENSG00000107959.11chr10-3199121319934631991213199256319962631997230.116000.000000.00000longerK562AQR
A3SSPITRM1ENSG00000107959.11chr10-3185580318592331855803185693318648331865580.073000.000000.00003longerK562AQR
A3SSPITRM1ENSG00000107959.11chr10-320760432077193207604320767532084203208572-0.070000.002880.01778shorterK562AQR
A3SSPITRM1ENSG00000107959.11chr10-3185580318592331855803185693318648331865580.237000.000050.02502longerHepG2FTO
A3SSPITRM1ENSG00000107959.11chr10-320760432077193207604320767532084203208572-0.274000.000000.00008shorterHepG2U2AF1
A3SSPITRM1ENSG00000107959.11chr10-320760432077193207604320767532084203208572-0.169000.000070.00522shorterK562U2AF1
A3SSPITRM1ENSG00000107959.11chr10-3185580318592331855803185693318648331865580.125000.000080.04243longerHepG2HNRNPL
A3SSPITRM1ENSG00000107959.11chr10-320760432077193207604320767532084203208572-0.076000.000120.01926shorterK562HNRNPC
A3SSPITRM1ENSG00000107959.11chr10-3185580318592331855803185693318648331865580.065000.000050.05554longerK562FTO
A5SSPITRM1ENSG00000107959.11chr10-319035931904833190362319048331901783190255-0.271000.000480.06433shorterHepG2AKAP1
A5SSPITRM1ENSG00000107959.11chr10-319035931904833190362319048331901783190255-0.317000.000090.04240shorterHepG2KHSRP
A5SSPITRM1ENSG00000107959.11chr10-319035931904833190362319048331901783190255-0.322000.000170.03188shorterHepG2MATR3
A5SSPITRM1ENSG00000107959.11chr10-319035931904833190362319048331901783190255-0.327000.000310.08693shorterHepG2G3BP1
RIPITRM1ENSG00000107959.11chr10-3199121319972331991213199256319962631997230.095000.001370.02311includedK562SF3B4
RIPITRM1ENSG00000107959.11chr10-3185580318592331855803185693318579731859230.215000.010870.06463includedHepG2U2AF2
RIPITRM1ENSG00000107959.11chr10-3199121319972331991213199256319962631997230.061000.000530.01551includedK562RBM22
RIPITRM1ENSG00000107959.11chr10-3199121319972331991213199256319962631997230.097000.001210.02583includedK562U2AF1
RIPITRM1ENSG00000107959.11chr10-3207429320767532074293207526320760432076750.093000.000050.00120includedK562U2AF2
RIPITRM1ENSG00000107959.11chr10-3199121319972331991213199256319962631997230.084000.004450.05388includedK562U2AF2
RIPITRM1ENSG00000107959.11chr10-3199121319972331991213199256319962631997230.079000.001630.01046includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PITRM1 is not avaliable on ENCORE database.