PFDN1

General Information

Gene Name : PFDN1
Gene ID : ENSG00000113068.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PFDN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PFDN1	ENSG00000113068.9	120.04	102.16	111.10	ENCSR000AEF
HepG2	PFDN1	ENSG00000113068.9	90.38	102.37	96.38	ENCSR985KAT
K562	PFDN1	ENSG00000113068.9	71.75	80.00	75.88	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PFDN1 is not avaliable on ENCORE database.

Proteins bound to RNA

PFDN1 RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for PFDN1 is not avaliable on ENCORE database.

18 proteins are bound to PFDN1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	139646622	139646689	-	intron-Distal	7.59713	148.37924	HepG2	DROSHA
chr5	139646616	139646670	-	intron-Distal	7.21723	140.92134	HepG2	RBFOX2
chr5	139646686	139646710	-	intron-Distal	8.03822	121.07736	HepG2	RBFOX2
chr5	139646521	139646546	-	intron-Distal	7.79827	115.15175	HepG2	DROSHA
chr5	139646394	139646491	-	intron-Distal	7.53057	113.30239	HepG2	DROSHA
chr5	139646670	139646686	-	intron-Distal	7.87267	106.52971	HepG2	RBFOX2
chr5	139646710	139646739	-	intron-Distal	8.74708	101.91068	HepG2	RBFOX2
chr5	139646491	139646521	-	intron-Distal	8.46912	100.48203	HepG2	DROSHA
chr5	139646514	139646551	-	intron-Distal	7.78278	100.02992	HepG2	RBFOX2
chr5	139646689	139646744	-	intron-Distal	8.41753	86.26927	HepG2	DROSHA
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 72 entries

eCLIP assay for PFDN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PFDN1 is not available on ENCORE database.
63 RBPs can affect the levels of PFDN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PFDN1 is not available on ENCORE database.

63 RBPs can affect the gene expression of PFDN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PFDN1	ENSG00000113068.5	777.15870	1592.97740	-1.03540	27.26090	25.96780	HepG2	RBM22
PFDN1	ENSG00000113068.5	1783.39650	1041.32870	0.77610	22.58100	21.22110	HepG2	ACO1
PFDN1	ENSG00000113068.5	1004.98220	1659.95540	-0.72400	17.10110	15.65960	HepG2	AUH
PFDN1	ENSG00000113068.5	621.17820	1325.59990	-1.09360	16.57560	15.08920	HepG2	IGF2BP2
PFDN1	ENSG00000113068.5	1353.81110	966.01870	0.48680	7.84650	6.92040	HepG2	UTP3
PFDN1	ENSG00000113068.5	1666.06360	864.75940	0.94600	8.09940	6.80380	HepG2	CNOT7
PFDN1	ENSG00000113068.5	1026.75270	1446.46650	-0.49440	7.74060	6.78640	HepG2	RECQL
PFDN1	ENSG00000113068.5	1502.51430	900.08760	0.73910	7.56290	6.53470	HepG2	SUPV3L1
PFDN1	ENSG00000113068.5	1550.74320	1131.96910	0.45400	7.21140	6.35830	K562	AGGF1
PFDN1	ENSG00000113068.5	2234.74200	1503.21750	0.57200	6.98690	6.12390	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PFDN1 is not available on ENCORE database.

12 RBPs can affect the splicing of PFDN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139661033	139661118	139682625	139682706	-0.15800	0.00000	0.00000	excluded	K562	PRPF8
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139661033	139661118	139682625	139682706	-0.13900	0.00000	0.00020	excluded	HepG2	PRPF8
SE	PFDN1	ENSG00000113068.5	chr5	-	139661033	139661118	139624623	139625642	139680000	139680167	-0.05500	0.00000	0.00000	excluded	HepG2	U2AF2
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139660544	139661118	139682625	139682671	-0.22400	0.00000	0.00000	excluded	K562	AQR
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139661033	139661118	139682625	139682706	-0.18900	0.00000	0.00000	excluded	HepG2	SRSF7
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139661033	139661118	139682625	139682706	-0.08400	0.00000	0.00000	excluded	K562	PUS1
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139661033	139661118	139682625	139682706	-0.11700	0.00000	0.00025	excluded	K562	EFTUD2
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139661033	139661118	139682625	139682706	0.05600	0.00000	0.00091	included	HepG2	HNRNPL
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139661033	139661118	139682625	139682706	-0.09700	0.00001	0.00108	excluded	HepG2	RBM22
SE	PFDN1	ENSG00000113068.5	chr5	-	139680000	139680167	139661033	139661118	139682625	139682706	-0.06400	0.00001	0.00073	excluded	K562	HNRNPK

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PFDN1

General Information

Functions

Localization

Domains (AlphaFold: PFDN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PFDN1 is not avaliable on ENCORE database.

18 proteins are bound to PFDN1 RNA:

eCLIP assay for PFDN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PFDN1 is not available on ENCORE database.

63 RBPs can affect the gene expression of PFDN1 :

The Knockdown/knockout RNA-Seq assay for PFDN1 is not available on ENCORE database.

12 RBPs can affect the splicing of PFDN1 :

The Knockdown/knockout RNA-Seq assay for PFDN1 is not avaliable on ENCORE database.