NT5C3B

General Information

Gene Name       : NT5C3B
Gene ID             : ENSG00000141698.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NT5C3B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NT5C3BENSG00000141698.1634.3232.6433.48ENCSR000AEF
HepG2NT5C3BENSG00000141698.1689.8387.4388.63ENCSR985KAT
K562NT5C3BENSG00000141698.1691.5679.7185.63ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NT5C3B is not avaliable on ENCORE database.



Proteins bound to RNA
  • NT5C3B RNA is bound by 13 proteins.  







eCLIP assay for NT5C3B is not avaliable on ENCORE database.





13 proteins are bound to NT5C3B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173998370339983771-3'-UTR,CDS,intron-Distal3.254043.80299HepG2GRWD1
chr173998865539988730-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.285118.37630K562YBX3
chr173998172339981816-3'-UTR,CDS,intron-Distal,intron-Proximal3.322293.20279HepG2LSM11
chr173998174839981883-3'-UTR,CDS,intron-Distal,intron-Proximal3.680937.68275HepG2PABPN1
chr173998379739983877-3'-UTR,CDS,intron-Distal3.551074.47973K562YBX3
chr173998372139983770-3'-UTR,CDS,intron-Distal3.413103.87559K562YBX3
chr173998364139983679-3'-UTR,CDS,intron-Distal,intron-Proximal3.825336.04280HepG2PRPF8
chr173998378639983876-3'-UTR,CDS,intron-Distal3.317147.39995HepG2BCLAF1
chr173998710539987142-3'-UTR,CDS,intron-Distal,intron-Proximal3.203123.99124HepG2PPIG
chr173998499239985046-3'-UTR,CDS,intron-Distal,intron-Proximal4.603314.65563K562AQR
chr173999212539992220-5'-UTR,CDS,intron-Distal,intron-Proximal3.7291910.93644HepG2PPIG
chr173999142039991466-5'-UTR,CDS,intron-Distal,intron-Proximal4.378394.58968K562PRPF8
chr173999132039991328-5'-UTR,CDS,intron-Distal,intron-Proximal4.719597.75772K562YBX3
chr173999234739992481-5'-UTR,CDS,intron-Distal,intron-Proximal3.638824.50631HepG2DDX3X
chr173999239539992455-5'-UTR,CDS,intron-Distal,intron-Proximal4.018933.46336HepG2SRSF1
chr173999132139991378-5'-UTR,CDS,intron-Distal,intron-Proximal5.497356.71458K562EFTUD2
chr173999143939991491-5'-UTR,CDS,intron-Distal,intron-Proximal5.469287.36776HepG2PRPF8
chr173999231939992492-5'-UTR,CDS,intron-Distal,intron-Proximal3.355217.34517HepG2NCBP2
chr173999237239992455-5'-UTR,CDS,intron-Distal,intron-Proximal3.088854.71502HepG2GRWD1
chr173999217639992235-5'-UTR,CDS,intron-Distal,intron-Proximal3.8190312.21647HepG2PRPF8
chr173999132839991365-5'-UTR,CDS,intron-Distal,intron-Proximal4.167679.22606K562YBX3
chr173999226239992338-CDS,intron-Distal,intron-Proximal3.995408.86977HepG2EFTUD2
chr173998188739981928-CDS,intron-Distal,intron-Proximal3.647717.26133HepG2PRPF8
chr173999205539992125-CDS,intron-Distal,intron-Proximal3.448419.28389HepG2PRPF8
chr173998179439981861-CDS,intron-Distal,intron-Proximal3.136514.87174HepG2PPIG
chr173999199539992110-intron-Distal,intron-Proximal6.3629826.93924HepG2EFTUD2
chr173999196439992046-intron-Distal,intron-Proximal4.837874.96013K562PRPF8
chr173999229139992331-intron-Distal,intron-Proximal3.826248.59245HepG2AQR
chr173998288439982929-intron-Distal3.968933.77753HepG2ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NT5C3B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NT5C3B is not available on ENCORE database.

  • 68 RBPs can affect the levels of NT5C3B.  








The Knockdown/knockout RNA-Seq assay for NT5C3B is not available on ENCORE database.





68 RBPs can affect the gene expression of NT5C3B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NT5C3BENSG00000141698.121421.805301115.309200.350202.405701.66900HepG2ASCC1
NT5C3BENSG00000141698.12923.08600682.012700.436602.301001.45030HepG2BCCIP
NT5C3BENSG00000141698.12737.903401059.60800-0.522004.267803.32120HepG2CIRBP
NT5C3BENSG00000141698.121220.56730812.072200.5878011.9687010.48280HepG2DDX19B
NT5C3BENSG00000141698.121041.50830840.058200.310002.958102.26000HepG2DKC1
NT5C3BENSG00000141698.12796.859601066.32970-0.420302.811602.21320HepG2EIF2S1
NT5C3BENSG00000141698.12243.25250584.75830-1.2654014.4726012.59220HepG2EIF3D
NT5C3BENSG00000141698.12468.328401178.51390-1.3314015.2700013.78500HepG2EIF4A3
NT5C3BENSG00000141698.12763.196501147.26880-0.588103.781902.98380HepG2EIF4B
NT5C3BENSG00000141698.121832.836801547.612700.243902.584702.00010HepG2ETF1
NT5C3BENSG00000141698.12799.677301053.11630-0.397203.307802.45320HepG2FUBP3
NT5C3BENSG00000141698.12893.639501116.45970-0.321202.072601.46240HepG2HNRNPK
NT5C3BENSG00000141698.121202.87810950.544900.339604.422503.58570HepG2HNRNPL
NT5C3BENSG00000141698.12758.064601121.15080-0.564604.859703.98800HepG2IGF2BP2
NT5C3BENSG00000141698.12941.25550744.068900.339104.319403.42380HepG2ILF2
NT5C3BENSG00000141698.121865.523801270.340200.554304.341903.29500HepG2LARP4
NT5C3BENSG00000141698.12899.889301224.10980-0.443903.129302.45810HepG2NCBP2
NT5C3BENSG00000141698.12713.818101090.32280-0.611105.409904.41120HepG2PABPC4
NT5C3BENSG00000141698.121010.780101215.71350-0.266302.336901.76910HepG2PCBP1
NT5C3BENSG00000141698.12795.46170649.703000.291902.259601.58690HepG2PPIL4
NT5C3BENSG00000141698.121244.47880925.722300.426805.724404.65460HepG2PRPF4
NT5C3BENSG00000141698.12854.645601236.97170-0.533408.411807.56570HepG2PTBP1
NT5C3BENSG00000141698.121437.74350987.693900.541606.174905.33080HepG2PUF60
NT5C3BENSG00000141698.12878.096801339.80360-0.609609.348708.29850HepG2QKI
NT5C3BENSG00000141698.121597.623801293.496500.304603.115302.57400HepG2RBM22
NT5C3BENSG00000141698.12762.273201215.90770-0.673709.278608.09790HepG2RBM25
NT5C3BENSG00000141698.121021.83250777.398200.394302.659701.68630HepG2RBM27
NT5C3BENSG00000141698.12231.06960631.28240-1.4500016.0863013.64770HepG2RCC2
NT5C3BENSG00000141698.121442.242801061.707700.441803.733702.95880HepG2RPLP0
NT5C3BENSG00000141698.12943.14790716.953900.395502.608501.83010HepG2RPS2
NT5C3BENSG00000141698.12403.94020571.05020-0.499503.271902.24660HepG2SERBP1
NT5C3BENSG00000141698.121018.541101287.95890-0.338604.092003.39610HepG2SF3B4
NT5C3BENSG00000141698.121931.834901460.919000.403006.790006.10190HepG2SRFBP1
NT5C3BENSG00000141698.121092.729601344.30460-0.298903.542403.02380HepG2SRSF1
NT5C3BENSG00000141698.12941.784101093.62410-0.215602.007401.52240HepG2SRSF9
NT5C3BENSG00000141698.121619.772601268.357800.352704.855104.21290HepG2SSB
NT5C3BENSG00000141698.12909.01160677.896000.423103.118202.35420HepG2TARDBP
NT5C3BENSG00000141698.12859.189801110.29340-0.369903.521102.58270HepG2TIA1
NT5C3BENSG00000141698.12921.22160707.827800.380003.271102.73430HepG2TIAL1
NT5C3BENSG00000141698.12536.64500714.13250-0.412204.310403.63700HepG2TRIM56
NT5C3BENSG00000141698.12635.01400394.300000.687405.553404.47080HepG2UCHL5
NT5C3BENSG00000141698.12930.31270611.149700.606103.279002.18180HepG2UPF2
NT5C3BENSG00000141698.121199.43360979.440900.292202.295501.73890HepG2UTP3
NT5C3BENSG00000141698.121008.71730657.100900.618204.934503.97460HepG2XRN2
NT5C3BENSG00000141698.12788.151701476.12250-0.905307.150906.27780K562AQR
NT5C3BENSG00000141698.12321.76300677.78290-1.0748012.6072010.69620K562BOP1
NT5C3BENSG00000141698.12498.28030665.15030-0.416702.844801.54270K562CIRBP
NT5C3BENSG00000141698.12382.88070697.14080-0.864607.207805.17050K562EEF2
NT5C3BENSG00000141698.12490.67660673.59920-0.457103.023502.06840K562EFTUD2
NT5C3BENSG00000141698.12841.333801107.30020-0.396304.488703.59950K562EIF2S2
NT5C3BENSG00000141698.12275.13920721.26170-1.3904017.3412014.57570K562EIF3D
NT5C3BENSG00000141698.121342.363601726.13090-0.362804.608503.40840K562EIF4G2
NT5C3BENSG00000141698.121374.096901087.322600.337602.646301.81630K562FIP1L1
NT5C3BENSG00000141698.12557.78710733.29430-0.394702.538601.71910K562FMR1
NT5C3BENSG00000141698.12418.93140621.55300-0.569204.025002.90750K562FTO
NT5C3BENSG00000141698.12865.55890594.043300.543006.472705.60390K562FXR1
NT5C3BENSG00000141698.12422.59550688.02800-0.703206.866405.61460K562GPKOW
NT5C3BENSG00000141698.121893.447601475.551000.359703.500302.65320K562GRSF1
NT5C3BENSG00000141698.12537.89190825.03140-0.617106.344205.47580K562HNRNPC
NT5C3BENSG00000141698.121351.21650894.409600.595202.925301.96500K562HNRNPM
NT5C3BENSG00000141698.121936.523901474.078800.393603.652602.74210K562HSPD1
NT5C3BENSG00000141698.12417.84760587.54000-0.491702.529601.63950K562KRR1
NT5C3BENSG00000141698.12811.79560652.247100.315602.229601.47090K562MAGOH
NT5C3BENSG00000141698.12958.511801155.86430-0.270102.580101.85620K562NSUN2
NT5C3BENSG00000141698.12707.360301061.20840-0.585204.996803.87930K562PCBP3
NT5C3BENSG00000141698.12559.66510813.96320-0.540405.501304.37320K562POLR2G
NT5C3BENSG00000141698.121660.945901234.428900.428104.014603.00250K562PPIG
NT5C3BENSG00000141698.12830.16770633.715900.389503.243102.53000K562PTBP1
NT5C3BENSG00000141698.12258.59780675.17470-1.3846022.7801020.00550K562RCC2
NT5C3BENSG00000141698.12445.96210654.40840-0.553303.575702.46350K562SF3B1
NT5C3BENSG00000141698.12782.92890966.87140-0.304402.730401.57320K562SRSF7
NT5C3BENSG00000141698.12809.302701048.70230-0.373903.266902.31950K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NT5C3B is not available on ENCORE database.





16 RBPs can affect the splicing of NT5C3B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENT5C3BENSG00000141698.12chr17-399850413998520439983677399838783998705239987142-0.051000.001020.06097excludedHepG2RBM22
SENT5C3BENSG00000141698.12chr17-399918393999193439991454399915243999211039992209-0.082000.000180.04882excludedK562PCBP1
SENT5C3BENSG00000141698.12chr17-3999183939991934399914543999152439992110399922090.090000.000160.00589includedHepG2HNRNPK
SENT5C3BENSG00000141698.12chr17-3999183939991934399914543999152439992110399922090.067000.000720.06398includedHepG2SRSF7
SENT5C3BENSG00000141698.12chr17-399850413998520439983677399838783998705239987142-0.067000.000220.01476excludedHepG2SFPQ
SENT5C3BENSG00000141698.12chr17-399918393999193439991454399915243999211039992209-0.098000.000070.02142excludedK562LARP4
SENT5C3BENSG00000141698.12chr17-3998504139985115399836773998387839987052399871420.081000.001110.07179includedHepG2HNRNPL
SENT5C3BENSG00000141698.12chr17-3998998439990156399886433998872939991321399913680.065000.000000.00000includedK562HNRNPL
SENT5C3BENSG00000141698.12chr17-3999183939991934399914543999152439992110399922090.098000.000250.08299includedHepG2XPO5
SENT5C3BENSG00000141698.12chr17-399850413998522539983677399838783998705239987142-0.059000.004200.09251excludedHepG2SF3A3
SENT5C3BENSG00000141698.12chr17-399918393999193439991454399915243999211039992209-0.082000.001360.04759excludedK562TARDBP
SENT5C3BENSG00000141698.12chr17-3999183939991934399914543999152439992110399922090.092000.000880.03435includedK562HNRNPU
A3SSNT5C3BENSG00000141698.12chr17-3998367739983911399836773998387839985041399852040.059000.000000.00000longerK562AQR
A3SSNT5C3BENSG00000141698.12chr17-399850413998520439985041399851153998705239987142-0.085000.000000.00000shorterHepG2U2AF1
A3SSNT5C3BENSG00000141698.12chr17-399850413998520439985041399851153998705239987142-0.065000.000020.00197shorterK562U2AF1
A5SSNT5C3BENSG00000141698.12chr17-399918393999220939992110399922093999145439991524-0.066000.001030.09630shorterK562PTBP1
MXENT5C3BENSG00000141698.12chr17-39985041399852043998705239987142399836773998387839988643399887290.169000.000010.000221includedHepG2SFPQ
MXENT5C3BENSG00000141698.12chr17-39985041399852043998705239987142399836773998387839988643399887290.114000.001050.008481includedHepG2U2AF2
MXENT5C3BENSG00000141698.12chr17-39985041399852043998705239987142399836773998387839988643399887290.118000.000940.018091includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NT5C3B is not avaliable on ENCORE database.