NECAP1

General Information

Gene Name       : NECAP1
Gene ID             : ENSG00000089818.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NECAP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NECAP1ENSG00000089818.1714.4113.6914.05ENCSR000AEF
HepG2NECAP1ENSG00000089818.1714.8415.6015.22ENCSR985KAT
K562NECAP1ENSG00000089818.1712.3812.1512.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NECAP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NECAP1 RNA is bound by 9 proteins.  







eCLIP assay for NECAP1 is not avaliable on ENCORE database.





9 proteins are bound to NECAP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1282497038249778+3'-UTR3.739894.50550K562UPF1
chr1282427628242825+3'-UTR,CDS,intron-Proximal5.432626.22530K562AQR
chr1282488458248912+3'-UTR3.546183.01531K562YBX3
chr1282500628250139+3'-UTR3.219103.00914HepG2PTBP1
chr1282482608248359+3'-UTR,CDS,intron-Proximal3.587105.35619K562AQR
chr1282502198250327+3'-UTR4.258803.35973HepG2FUBP3
chr1282502958250357+3'-UTR4.410714.72162K562KHSRP
chr1282500508250130+3'-UTR4.386374.49973K562MATR3
chr1282428818242945+3'-UTR,CDS,intron-Proximal4.013063.01428K562UCHL5
chr1282451208245192+intron-Distal,intron-Proximal4.070303.09122HepG2PTBP1
chr1282451318245201+intron-Distal,intron-Proximal5.024606.19339K562PTBP1
chr1282426328242688+intron-Proximal5.234826.75320K562AQR
chr1282454078245452+intron-Proximal5.249156.40247K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NECAP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NECAP1 is not available on ENCORE database.

  • 77 RBPs can affect the levels of NECAP1.  








The Knockdown/knockout RNA-Seq assay for NECAP1 is not available on ENCORE database.





77 RBPs can affect the gene expression of NECAP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NECAP1ENSG00000089818.121255.18420682.646400.878609.156208.25100HepG2AKAP1
NECAP1ENSG00000089818.12780.15080523.566500.575305.061303.22100HepG2ATP5C1
NECAP1ENSG00000089818.12899.64570653.404800.461305.427304.52110HepG2AUH
NECAP1ENSG00000089818.121016.24270675.720500.588606.003605.16210HepG2BOP1
NECAP1ENSG00000089818.12751.41900553.122100.441902.085601.40860HepG2CALR
NECAP1ENSG00000089818.12782.46790536.632000.544004.146803.21170HepG2CIRBP
NECAP1ENSG00000089818.12723.22430395.442900.870905.774704.67100HepG2CNOT7
NECAP1ENSG00000089818.12428.07790620.36010-0.535203.728302.94280HepG2CPSF6
NECAP1ENSG00000089818.12172.21890273.09000-0.665102.859101.76700HepG2CSTF2
NECAP1ENSG00000089818.12740.34940552.685400.421603.873103.13560HepG2CELF1
NECAP1ENSG00000089818.12887.73620594.334400.578808.781507.57470HepG2DAZAP1
NECAP1ENSG00000089818.12551.09960379.158100.539403.900303.10870HepG2DDX21
NECAP1ENSG00000089818.121548.01560653.931001.2431020.7954019.24550HepG2DDX3X
NECAP1ENSG00000089818.12724.54780554.928000.384702.426501.47650HepG2DDX5
NECAP1ENSG00000089818.12329.62910455.69930-0.467203.440202.69580HepG2DKC1
NECAP1ENSG00000089818.12511.68440347.794800.556904.926704.01340HepG2DNAJC21
NECAP1ENSG00000089818.12513.65120349.117700.557003.057301.88540HepG2AGO1
NECAP1ENSG00000089818.12990.29540596.788500.730506.613605.62360HepG2EIF4A3
NECAP1ENSG00000089818.12269.60550581.04140-1.107808.834407.64140HepG2EIF4B
NECAP1ENSG00000089818.12370.45430586.29400-0.662307.402406.15120HepG2EIF4G1
NECAP1ENSG00000089818.12976.86300750.233200.380703.824903.13840HepG2ETF1
NECAP1ENSG00000089818.12917.16940585.929300.646404.854703.85940HepG2FIP1L1
NECAP1ENSG00000089818.12549.44590355.466600.628205.120604.06190HepG2FUBP3
NECAP1ENSG00000089818.12751.73560558.558000.428402.604101.95850HepG2G3BP1
NECAP1ENSG00000089818.12451.32120592.96350-0.393802.125601.35120HepG2G3BP2
NECAP1ENSG00000089818.12412.38180546.18050-0.405403.186002.19200HepG2HNRNPA2B1
NECAP1ENSG00000089818.12535.06610390.539300.454102.717802.03010HepG2HNRNPC
NECAP1ENSG00000089818.12505.49170387.959100.381702.823302.21030HepG2HNRNPU
NECAP1ENSG00000089818.12640.08170474.162400.432802.969902.13260HepG2MSI2
NECAP1ENSG00000089818.121068.60280619.965500.785408.019306.96720HepG2NCBP2
NECAP1ENSG00000089818.12920.42640590.954800.639204.409102.60150HepG2NKRF
NECAP1ENSG00000089818.12391.11690595.06160-0.605404.405303.46600HepG2NSUN2
NECAP1ENSG00000089818.12435.58890346.032600.332001.955301.32750HepG2PPIL4
NECAP1ENSG00000089818.12243.15000562.55700-1.2102015.8658014.59720HepG2PUF60
NECAP1ENSG00000089818.12453.41120596.73530-0.396302.894202.20930HepG2PUM2
NECAP1ENSG00000089818.12706.64420485.151400.542406.669805.78470HepG2PUS1
NECAP1ENSG00000089818.12748.81590579.021200.370902.766402.14170HepG2QKI
NECAP1ENSG00000089818.12882.49550682.235900.371203.192102.27830HepG2RBM15
NECAP1ENSG00000089818.12915.78000627.048400.546306.546305.83060HepG2RBM22
NECAP1ENSG00000089818.12669.05780525.485200.348402.193101.58710HepG2RBM25
NECAP1ENSG00000089818.12433.05710594.97250-0.458303.880003.26000HepG2NELFE
NECAP1ENSG00000089818.12558.50890383.901700.540702.618501.69690HepG2RPS10
NECAP1ENSG00000089818.12412.70050298.950100.465102.566901.65960HepG2SERBP1
NECAP1ENSG00000089818.12406.93630664.30530-0.707006.357605.32530HepG2SF3B1
NECAP1ENSG00000089818.12586.35840305.301700.941402.838801.50740HepG2SNRNP200
NECAP1ENSG00000089818.12855.20520708.214400.272002.240401.77390HepG2SRFBP1
NECAP1ENSG00000089818.121130.54270714.741100.661405.250403.83260HepG2SRSF3
NECAP1ENSG00000089818.12587.83140472.644300.314502.321101.80630HepG2SRSF9
NECAP1ENSG00000089818.12579.23500391.315700.565703.242501.90840HepG2STAU1
NECAP1ENSG00000089818.12523.46290631.68500-0.271102.043001.49280HepG2SUCLG1
NECAP1ENSG00000089818.12328.94410522.16940-0.666706.844006.03090HepG2TAF15
NECAP1ENSG00000089818.12816.84410654.057500.320501.958201.33490HepG2TARDBP
NECAP1ENSG00000089818.12859.54410355.683101.272904.451203.18860HepG2U2AF2
NECAP1ENSG00000089818.12427.45570593.42470-0.473304.241002.97690HepG2UTP18
NECAP1ENSG00000089818.12807.57210557.392600.534806.505705.65170HepG2UTP3
NECAP1ENSG00000089818.121223.10770634.955700.9457027.8095026.53570HepG2ZNF622
NECAP1ENSG00000089818.121380.37050904.125700.6104011.5025010.44030K562AGGF1
NECAP1ENSG00000089818.121438.59960940.788800.612607.677706.54100K562AKAP8L
NECAP1ENSG00000089818.122154.05860871.195501.3059030.7094028.94970K562AQR
NECAP1ENSG00000089818.12931.11520706.725000.397702.709801.84540K562BOP1
NECAP1ENSG00000089818.121007.46250764.561000.397902.877002.00480K562FMR1
NECAP1ENSG00000089818.12760.94220555.956100.452702.451801.79230K562G3BP2
NECAP1ENSG00000089818.121458.96510793.215500.879104.449202.79160K562HNRNPA2B1
NECAP1ENSG00000089818.121398.35400998.394300.485905.053503.87470K562KIF1C
NECAP1ENSG00000089818.12514.16840641.55550-0.319302.063701.33300K562MAGOH
NECAP1ENSG00000089818.121375.495301118.456300.298302.299801.48420K562MBNL1
NECAP1ENSG00000089818.121409.98380783.958400.846708.327406.47110K562NAA15
NECAP1ENSG00000089818.12697.69190529.893100.396803.100901.79970K562NCBP2
NECAP1ENSG00000089818.12835.43790587.581800.507603.593201.51800K562PABPC4
NECAP1ENSG00000089818.121200.95370693.528900.792103.582802.41550K562PABPN1
NECAP1ENSG00000089818.12453.72430582.40750-0.360202.329301.59460K562POLR2G
NECAP1ENSG00000089818.12606.51540412.230800.557003.806602.92840K562PRPF8
NECAP1ENSG00000089818.122984.35320932.968101.6774050.6781048.26890K562PUS1
NECAP1ENSG00000089818.12832.77880530.435100.650703.492101.86330K562RAVER1
NECAP1ENSG00000089818.121476.76550909.066900.6999012.7885011.51430K562RBM15
NECAP1ENSG00000089818.12584.72380419.884400.477702.726801.91770K562RPS19
NECAP1ENSG00000089818.12642.25020864.59050-0.428902.663401.68210K562RPS3
NECAP1ENSG00000089818.121523.88410634.071201.264907.190304.95370K562SF1
NECAP1ENSG00000089818.12738.58740578.032000.353502.729901.88030K562SF3B4
NECAP1ENSG00000089818.121606.20500728.469901.140606.604504.42090K562SNRNP200
NECAP1ENSG00000089818.12384.24010618.42330-0.686606.054504.97880K562TARDBP
NECAP1ENSG00000089818.12561.28520426.586300.395802.274201.42940K562TRIM56
NECAP1ENSG00000089818.12848.93520538.829500.655705.436903.80070K562U2AF1
NECAP1ENSG00000089818.12889.11990556.517400.675908.716907.27800K562U2AF2
NECAP1ENSG00000089818.12450.05850766.14230-0.7675011.8411010.48260K562UPF1
NECAP1ENSG00000089818.12832.64900681.697600.288502.621901.79720K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NECAP1 is not available on ENCORE database.





10 RBPs can affect the splicing of NECAP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENECAP1ENSG00000089818.12chr12+8244364824444682425318242895824527182453670.164000.001460.09793includedHepG2G3BP1
SENECAP1ENSG00000089818.12chr12+8244364824444682425318242895824527182453670.154000.000510.03614includedHepG2AKAP1
SENECAP1ENSG00000089818.12chr12+824527182453808242790824289582454678245651-0.130000.005730.05197excludedK562AQR
SENECAP1ENSG00000089818.12chr12+8244364824444682425318242895824527182453670.137000.001730.09932includedHepG2DDX3X
SENECAP1ENSG00000089818.12chr12+824436482444468242531824289582452718245367-0.300000.000010.00026excludedK562PUS1
SENECAP1ENSG00000089818.12chr12+824436482444468242790824289582452718245380-0.240000.002610.06425excludedHepG2SF3A3
SENECAP1ENSG00000089818.12chr12+824436482444468242531824289582452718245367-0.198000.001830.04330excludedK562RBM15
A5SSNECAP1ENSG00000089818.12chr12+8242771824293982427718242895824436482444460.153000.005540.07876longerK562AQR
RINECAP1ENSG00000089818.12chr12+8242531824289582425318242632824279082428950.155000.000010.00013includedK562PUS1
RINECAP1ENSG00000089818.12chr12+8242531824289582425318242632824279082428950.134000.000730.01060includedK562AGGF1
RINECAP1ENSG00000089818.12chr12+8242531824289582425318242632824279082428950.213000.000170.00278includedK562RBM15
RINECAP1ENSG00000089818.12chr12+824253182428958242531824263282427908242895-0.114000.001900.07889excludedK562SBDS
RINECAP1ENSG00000089818.12chr12+8242531824289582425318242632824279082428950.142000.001060.01528includedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NECAP1 is not avaliable on ENCORE database.