LYRM4

General Information

Gene Name       : LYRM4
Gene ID             : ENSG00000214113.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LYRM4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LYRM4ENSG00000214113.1023.0730.0726.57ENCSR000AEF
HepG2LYRM4ENSG00000214113.1034.4341.7538.09ENCSR985KAT
K562LYRM4ENSG00000214113.1022.5824.8223.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LYRM4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LYRM4 RNA is bound by 20 proteins.  







eCLIP assay for LYRM4 is not avaliable on ENCORE database.





20 proteins are bound to LYRM4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr651094195109500-3'-UTR,intron-Distal,intron-Proximal4.200734.24698K562IGF2BP1
chr651093745109458-3'-UTR,intron-Distal5.0443313.62352K562LIN28B
chr651095055109674-3'-UTR,CDS,intron-Distal,intron-Proximal4.744184.59164HepG2IGF2BP1
chr651095535109699-3'-UTR,CDS,intron-Distal,intron-Proximal4.222523.61803HepG2ZC3H11A
chr651096075109702-3'-UTR,CDS,intron-Distal3.885309.52223K562PABPC4
chr651093635109436-3'-UTR,intron-Distal3.312513.88708HepG2LIN28B
chr651095985109726-3'-UTR,CDS,intron-Distal3.840319.98187K562YBX3
chr651095305109607-3'-UTR,intron-Distal,intron-Proximal4.301319.63547K562PABPC4
chr651095245109590-3'-UTR,intron-Distal,intron-Proximal3.742515.47244HepG2LARP4
chr651093835109456-3'-UTR,intron-Distal4.053017.83342HepG2SUB1
chr652609945261061-5'-UTR,intron-Distal,intron-Proximal3.367249.88402K562DDX3X
chr652608905260974-5'-UTR,CDS,intron-Distal,intron-Proximal4.036905.62144HepG2NCBP2
chr652610635261164-5'-UTR,intron-Distal,intron-Proximal5.616457.46114HepG2DDX3X
chr652609925261063-5'-UTR,intron-Distal,intron-Proximal5.402743.15149HepG2DDX3X
chr652610615261153-5'-UTR,intron-Distal,intron-Proximal5.2386522.37062K562DDX3X
chr652169315216972-CDS,intron-Distal,intron-Proximal3.243833.67697K562YBX3
chr652168575216925-CDS,intron-Distal3.576836.89681K562PABPC4
chr652608805260940-CDS,intron-Distal,intron-Proximal3.4699712.97037K562YBX3
chr651895405189612-intron-Distal6.6307066.01614HepG2QKI
chr651582625158305-intron-Distal4.789864.30178K562PTBP1
chr651895415189620-intron-Distal7.8828336.36881K562QKI
chr651357985135921-intron-Distal4.469776.12191HepG2CSTF2
chr652607385260849-intron-Distal4.4476917.43726HepG2EFTUD2
chr652103825210484-intron-Distal4.433164.24565HepG2HNRNPL
chr651896225189678-intron-Distal5.0298410.95636K562QKI
chr651906575190669-intron-Distal4.899106.91139HepG2QKI
chr652467705246913-intron-Distal4.220344.47904K562HNRNPK
chr652243415224492-intron-Distal3.720303.26999K562KHSRP
chr651885455188600-intron-Distal4.113524.05848HepG2QKI
chr651594745159579-intron-Distal3.934553.57018HepG2HNRNPK
chr651894585189514-intron-Distal8.2966882.59898HepG2QKI
chr652224325222599-intron-Distal3.724583.45805K562KHSRP
chr651971645197324-intron-Distal3.757095.22299HepG2SFPQ
chr652096255209702-intron-Distal4.010474.02219K562KHDRBS1
chr651860825186157-intron-Distal3.976993.89149HepG2HNRNPK
chr652140835214139-intron-Distal4.369004.30850HepG2QKI
chr652144615214587-intron-Distal3.724877.33907HepG2HNRNPK
chr652395215239609-intron-Distal3.970054.83406HepG2QKI
chr651702215170362-intron-Distal4.299473.71677HepG2HNRNPL
chr651896435189681-intron-Distal6.1528413.19203HepG2QKI
chr651386535138727-intron-Distal4.112963.60940HepG2HNRNPC
chr651573805157447-intron-Distal3.644093.38316HepG2SFPQ
chr651689615169081-intron-Distal3.573213.51804HepG2HNRNPL
chr651688445168921-intron-Distal3.997316.08987HepG2HNRNPK
chr651824505182518-intron-Distal3.450133.51804HepG2HNRNPL
chr652469895247090-intron-Distal3.842895.84244HepG2HNRNPK
chr652147705214836-intron-Distal3.219714.21858HepG2HNRNPK
chr651359265136000-intron-Distal4.580107.22648HepG2CSTF2
chr651894355189458-intron-Distal5.3602416.72839HepG2QKI
chr651892715189320-intron-Distal6.5822620.44285HepG2QKI
chr651894445189516-intron-Distal7.4258929.24467K562QKI
chr652468365246927-intron-Distal3.923546.99640HepG2HNRNPK
chr651484625148515-intron-Distal4.630536.62423HepG2XPO5
chr651626845162775-intron-Distal4.175106.57428HepG2PTBP1
chr652348605234976-intron-Distal3.344185.09956HepG2PTBP1
chr651724505172524-intron-Distal4.487833.70058HepG2XPO5
chr651582665158306-intron-Distal4.546305.75114HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LYRM4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LYRM4 is not available on ENCORE database.

  • 76 RBPs can affect the levels of LYRM4.  








The Knockdown/knockout RNA-Seq assay for LYRM4 is not available on ENCORE database.





76 RBPs can affect the gene expression of LYRM4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LYRM4ENSG00000214113.6669.31170489.157100.452303.060502.01570HepG2ADAR
LYRM4ENSG00000214113.6978.756701355.25740-0.469503.188102.62180HepG2AKAP1
LYRM4ENSG00000214113.6827.230301007.57860-0.284502.495301.83760HepG2AUH
LYRM4ENSG00000214113.6630.17850468.338800.428102.652001.97710HepG2CPSF6
LYRM4ENSG00000214113.6511.84680372.243600.459402.612401.56350HepG2CSTF2
LYRM4ENSG00000214113.6784.66840938.45130-0.258202.067001.49740HepG2CELF1
LYRM4ENSG00000214113.6423.60950559.82960-0.402302.496301.84920HepG2DDX21
LYRM4ENSG00000214113.6433.80600592.63010-0.450102.561401.81330HepG2DDX55
LYRM4ENSG00000214113.6856.923001115.17550-0.380002.239301.67830HepG2DDX6
LYRM4ENSG00000214113.6366.63490492.55580-0.425903.099502.35960HepG2DNAJC21
LYRM4ENSG00000214113.6399.68230488.21010-0.288601.989501.41990HepG2DNAJC2
LYRM4ENSG00000214113.6448.26650622.72270-0.474202.855801.92070HepG2EEF2
LYRM4ENSG00000214113.6515.526701072.09900-1.0563013.9168012.65480HepG2EIF2S1
LYRM4ENSG00000214113.6924.651101184.82150-0.357702.041801.49000HepG2EIF4A3
LYRM4ENSG00000214113.6770.98750557.998800.466303.946302.94980HepG2EWSR1
LYRM4ENSG00000214113.6790.851801195.35650-0.596005.521304.56640HepG2FXR1
LYRM4ENSG00000214113.6653.876501108.90980-0.762107.724006.64180HepG2G3BP1
LYRM4ENSG00000214113.6407.30920553.12740-0.441502.678201.99500HepG2HNRNPC
LYRM4ENSG00000214113.6846.524301122.77500-0.407403.081202.34570HepG2HNRNPK
LYRM4ENSG00000214113.6562.48890699.14930-0.313802.344001.67580HepG2IGF2BP1
LYRM4ENSG00000214113.6643.585101127.19730-0.808509.069807.92580HepG2IGF2BP2
LYRM4ENSG00000214113.6666.31090561.265600.247401.975501.34330HepG2ILF2
LYRM4ENSG00000214113.6495.45160688.16480-0.474002.686901.51760HepG2KHDRBS1
LYRM4ENSG00000214113.6785.806701195.77350-0.605705.508804.59260HepG2MAGOH
LYRM4ENSG00000214113.6738.768601202.47890-0.702806.436005.50610HepG2MATR3
LYRM4ENSG00000214113.6760.652201230.81440-0.694306.774005.80200HepG2NCBP2
LYRM4ENSG00000214113.6812.378001000.59880-0.300602.480801.76100HepG2NOL12
LYRM4ENSG00000214113.6652.761601096.16830-0.747807.786306.58940HepG2PABPC4
LYRM4ENSG00000214113.6788.466101078.30930-0.451706.039605.19780HepG2PCBP1
LYRM4ENSG00000214113.6848.47980576.971500.556307.354506.16580HepG2PRPF4
LYRM4ENSG00000214113.6621.726401097.19610-0.8195016.6994015.57280HepG2PTBP1
LYRM4ENSG00000214113.6636.51670955.15570-0.585506.155505.31300HepG2PUF60
LYRM4ENSG00000214113.6668.838801013.93590-0.6002010.814909.80430HepG2PUM1
LYRM4ENSG00000214113.6857.329901188.34150-0.471005.565404.72590HepG2QKI
LYRM4ENSG00000214113.6296.41000643.73110-1.118907.480306.35270HepG2RAVER1
LYRM4ENSG00000214113.61154.26780966.894300.255402.224301.74590HepG2RBM22
LYRM4ENSG00000214113.6727.014801078.47700-0.568906.495805.50280HepG2RBM25
LYRM4ENSG00000214113.6711.976701221.09380-0.7783015.3667014.28640HepG2NELFE
LYRM4ENSG00000214113.6864.218101137.24690-0.396104.823904.03970HepG2RECQL
LYRM4ENSG00000214113.6365.46000491.88740-0.428602.626802.02670HepG2RPS19
LYRM4ENSG00000214113.6533.86250725.21920-0.441902.266701.54110HepG2RPS3A
LYRM4ENSG00000214113.6457.70780681.70480-0.574704.395103.02540HepG2RPS5
LYRM4ENSG00000214113.6362.83990493.70960-0.444302.529301.62790HepG2SERBP1
LYRM4ENSG00000214113.6963.89120674.562500.514803.274502.54020HepG2SF3A3
LYRM4ENSG00000214113.6636.87160501.434900.344801.966801.36600HepG2SF3B1
LYRM4ENSG00000214113.6807.680901142.36570-0.500207.042706.16800HepG2SF3B4
LYRM4ENSG00000214113.6743.083701192.36500-0.6822012.6202011.76900HepG2SRSF1
LYRM4ENSG00000214113.6754.04880943.07230-0.322703.081202.42470HepG2SRSF5
LYRM4ENSG00000214113.6669.60010970.03730-0.534708.070707.21590HepG2SRSF9
LYRM4ENSG00000214113.6800.32080948.18550-0.244602.091001.62920HepG2SSB
LYRM4ENSG00000214113.6812.142101072.53710-0.401205.202304.39560HepG2SUCLG1
LYRM4ENSG00000214113.6742.45690984.79380-0.407503.773202.80390HepG2TIA1
LYRM4ENSG00000214113.6321.54280533.90850-0.731607.447406.69950HepG2TIAL1
LYRM4ENSG00000214113.6722.89090933.14010-0.368302.870101.97910HepG2TUFM
LYRM4ENSG00000214113.6561.17910987.70970-0.815607.829206.39130HepG2UBE2L3
LYRM4ENSG00000214113.6927.96840577.572000.6840010.696809.64250HepG2UTP3
LYRM4ENSG00000214113.6798.31250580.713600.459002.662201.95180HepG2XRN2
LYRM4ENSG00000214113.61121.99810793.981200.498806.865006.02870K562AGGF1
LYRM4ENSG00000214113.61167.02530826.166800.498204.837203.96450K562AKAP8L
LYRM4ENSG00000214113.61124.70930866.835300.375603.862802.76770K562ATP5C1
LYRM4ENSG00000214113.61273.68450889.056300.518607.444905.88610K562DKC1
LYRM4ENSG00000214113.6981.31480776.775700.337102.263401.49620K562FIP1L1
LYRM4ENSG00000214113.61478.299301205.400000.294302.178401.50250K562GRSF1
LYRM4ENSG00000214113.6430.49520746.03680-0.793209.106208.07430K562HNRNPC
LYRM4ENSG00000214113.6465.77150666.30490-0.516604.068602.65310K562HNRNPF
LYRM4ENSG00000214113.6899.64620638.876100.493703.418302.37490K562HNRNPM
LYRM4ENSG00000214113.61354.503701053.189100.362902.654601.87470K562HSPD1
LYRM4ENSG00000214113.6971.71170688.467300.497002.967302.04910K562NAA15
LYRM4ENSG00000214113.6558.10140926.10010-0.730607.010805.68490K562PCBP3
LYRM4ENSG00000214113.6476.75420710.32380-0.575205.106904.01620K562POLR2G
LYRM4ENSG00000214113.61171.97750881.746500.410403.263502.35940K562PPIG
LYRM4ENSG00000214113.61320.237001595.80830-0.273502.364501.38440K562PUM1
LYRM4ENSG00000214113.61322.79500819.378400.690908.126207.24400K562PUS1
LYRM4ENSG00000214113.61019.99900798.321300.353403.184302.55540K562RBM15
LYRM4ENSG00000214113.6439.82770610.43310-0.472903.546002.42530K562RCC2
LYRM4ENSG00000214113.6400.12990643.37980-0.685205.450204.09380K562TIAL1
LYRM4ENSG00000214113.6461.33350648.71500-0.491803.319002.19750K562UCHL5
LYRM4ENSG00000214113.6588.88370880.52980-0.580404.682303.11460K562UTP3
LYRM4ENSG00000214113.6956.41070807.005100.245002.131201.38090K562WDR43
LYRM4ENSG00000214113.61042.999701296.02260-0.313402.417601.61980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LYRM4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LYRM4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LYRM4 is not avaliable on ENCORE database.