LRRC42

General Information

Gene Name       : LRRC42
Gene ID             : ENSG00000116212.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LRRC42)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRRC42ENSG00000116212.1411.4217.5314.48ENCSR000AEF
HepG2LRRC42ENSG00000116212.1425.9233.5329.73ENCSR985KAT
K562LRRC42ENSG00000116212.1430.9728.2729.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRRC42 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRRC42 RNA is bound by 7 proteins.  







eCLIP assay for LRRC42 is not avaliable on ENCORE database.





7 proteins are bound to LRRC42 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr15441211554412184+5'-UTR,intron-Proximal3.868305.84843HepG2DDX3X
chr15441211254412225+5'-UTR,intron-Proximal3.393026.97927K562DDX3X
chr15441210754412178+5'-UTR,intron-Proximal3.846826.56921K562PCBP1
chr15441219354412212+5'-UTR3.498584.47973K562YBX3
chr15441788154417975+CDS3.791043.31827HepG2GRWD1
chr15443343254433470+CDS3.364347.19068K562YBX3
chr15443342254433432+CDS3.781585.53855K562YBX3
chr15441794354418014+CDS3.270897.42778K562YBX3
chr15441788854418007+CDS3.404144.24159K562RBM15
chr15441239054412465+intron-Distal4.796194.57154HepG2FAM120A
chr15441231254412406+intron-Distal,intron-Proximal4.578603.19125K562GTF2F1
chr15441280754412886+intron-Distal4.359903.77360K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRRC42 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRRC42 is not available on ENCORE database.

  • 61 RBPs can affect the levels of LRRC42.  








The Knockdown/knockout RNA-Seq assay for LRRC42 is not available on ENCORE database.





61 RBPs can affect the gene expression of LRRC42 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRRC42ENSG00000116212.10602.94760449.208800.424502.743801.67600HepG2AATF
LRRC42ENSG00000116212.10888.13350580.846000.612509.644008.64880HepG2ACO1
LRRC42ENSG00000116212.101386.85950746.569200.893409.733308.80240HepG2AKAP1
LRRC42ENSG00000116212.10565.08560384.357100.555903.477902.31740HepG2AKAP8
LRRC42ENSG00000116212.10868.22580583.561000.573107.861806.64910HepG2AKAP8L
LRRC42ENSG00000116212.10894.81240617.725200.534504.153103.19970HepG2ASCC1
LRRC42ENSG00000116212.10761.87330586.880900.376402.251201.54980HepG2CIRBP
LRRC42ENSG00000116212.10672.51970495.421100.440803.129502.41110HepG2DDX21
LRRC42ENSG00000116212.101010.88750614.328400.718406.247005.34820HepG2DDX6
LRRC42ENSG00000116212.10599.48080467.951700.357302.330301.33670HepG2EIF3G
LRRC42ENSG00000116212.10683.58380923.11350-0.433404.516703.49060HepG2EIF4G1
LRRC42ENSG00000116212.101423.630201117.465100.349204.207703.49360HepG2ETF1
LRRC42ENSG00000116212.10719.57440567.575400.342202.315001.55190HepG2EWSR1
LRRC42ENSG00000116212.101048.86200658.495800.671506.472405.43860HepG2FXR1
LRRC42ENSG00000116212.10259.59180373.82070-0.526102.539401.92370HepG2GPKOW
LRRC42ENSG00000116212.10453.65990679.75810-0.583407.120806.04040HepG2HNRNPF
LRRC42ENSG00000116212.10407.99810525.51350-0.365202.692002.09390HepG2HNRNPU
LRRC42ENSG00000116212.10431.42770669.36360-0.633706.608105.53140HepG2IGF2BP1
LRRC42ENSG00000116212.10846.31880662.414700.353401.840801.32090HepG2MATR3
LRRC42ENSG00000116212.10531.98580393.427100.435202.711001.90960HepG2MSI2
LRRC42ENSG00000116212.101088.02970544.485400.998707.484405.97390HepG2PABPC1
LRRC42ENSG00000116212.10833.44410666.468500.322403.187502.60840HepG2PTBP1
LRRC42ENSG00000116212.10658.51520885.63830-0.427503.331802.68650HepG2PUF60
LRRC42ENSG00000116212.10752.28890940.17860-0.321603.383902.74190HepG2PUM1
LRRC42ENSG00000116212.10706.58310591.626900.256101.966901.42840HepG2PUS1
LRRC42ENSG00000116212.10711.71080489.969400.538502.324701.67460HepG2RAVER1
LRRC42ENSG00000116212.10681.75580481.403500.501904.441303.38520HepG2RBM15
LRRC42ENSG00000116212.101050.60910741.684900.502206.562205.78880HepG2NELFE
LRRC42ENSG00000116212.10509.97910732.32760-0.522104.501603.65950HepG2RPLP0
LRRC42ENSG00000116212.10330.57090481.26840-0.541902.536401.62860HepG2RPS10
LRRC42ENSG00000116212.10370.90440467.99080-0.335401.972501.41340HepG2SAFB2
LRRC42ENSG00000116212.10761.75560448.027500.765603.643402.86630HepG2SF3A3
LRRC42ENSG00000116212.10681.26760849.25980-0.318002.923602.20370HepG2SLBP
LRRC42ENSG00000116212.101781.150101054.906900.7556020.5060019.47170HepG2SRFBP1
LRRC42ENSG00000116212.10418.97620667.85410-0.672708.918707.78980HepG2SRSF7
LRRC42ENSG00000116212.10726.85490589.213400.302802.663802.12020HepG2SRSF9
LRRC42ENSG00000116212.10808.91900600.667000.429302.403701.76790HepG2SUPV3L1
LRRC42ENSG00000116212.10463.69930651.03040-0.489504.405103.72270HepG2TAF15
LRRC42ENSG00000116212.10393.33980510.62020-0.376502.470701.99340HepG2TIAL1
LRRC42ENSG00000116212.10647.25040415.849400.638204.861304.04160HepG2U2AF1
LRRC42ENSG00000116212.10172.20850354.82810-1.043008.571507.23500HepG2UCHL5
LRRC42ENSG00000116212.10614.81300383.607000.680407.977407.04450HepG2UTP3
LRRC42ENSG00000116212.10347.40660438.33050-0.335402.128601.52780HepG2ZC3H8
LRRC42ENSG00000116212.10587.53400436.988300.427004.206603.57050HepG2ZNF622
LRRC42ENSG00000116212.101250.13750749.549400.7379015.2562014.03540K562AGGF1
LRRC42ENSG00000116212.101175.61780823.684400.513205.481403.98530K562AKAP8
LRRC42ENSG00000116212.101131.76050779.950700.537005.733204.77270K562AKAP8L
LRRC42ENSG00000116212.101128.563901441.54780-0.353102.459801.90010K562AQR
LRRC42ENSG00000116212.101053.52790847.122700.314503.213002.51880K562DDX47
LRRC42ENSG00000116212.101023.37500839.216700.286102.693301.83310K562DKC1
LRRC42ENSG00000116212.10715.22020902.32850-0.335303.036602.28850K562EIF2S2
LRRC42ENSG00000116212.10512.87650682.17790-0.411502.224501.30710K562EIF3D
LRRC42ENSG00000116212.10725.75550558.370800.378202.882002.07150K562EIF3G
LRRC42ENSG00000116212.10979.29080772.517200.342102.542401.75600K562EIF4A3
LRRC42ENSG00000116212.101165.442001393.01250-0.257302.513901.61550K562EIF4G2
LRRC42ENSG00000116212.101231.33940827.685600.573006.531205.13910K562KIF1C
LRRC42ENSG00000116212.101227.73680927.222100.404903.920802.80760K562MBNL1
LRRC42ENSG00000116212.101023.772801484.78760-0.536405.881604.24350K562MSI2
LRRC42ENSG00000116212.10499.62950683.13530-0.451302.773901.94180K562PCBP3
LRRC42ENSG00000116212.10395.12470523.97720-0.407202.603401.83010K562POLR2G
LRRC42ENSG00000116212.10820.08940629.364900.381802.682701.87760K562PPIG
LRRC42ENSG00000116212.10380.02040504.32010-0.408302.172701.38020K562PSIP1
LRRC42ENSG00000116212.101283.33270773.421700.730509.015008.08360K562PUS1
LRRC42ENSG00000116212.101128.48260753.645400.582308.270307.27360K562RBM15
LRRC42ENSG00000116212.10319.86000460.26170-0.525003.434702.33400K562RCC2
LRRC42ENSG00000116212.10452.99200906.63570-1.0010011.9264010.46270K562SRSF1
LRRC42ENSG00000116212.10844.66260629.876000.423203.811502.86890K562U2AF2
LRRC42ENSG00000116212.10398.07240635.35940-0.674505.704904.19170K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRRC42 is not available on ENCORE database.





11 RBPs can affect the splicing of LRRC42 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELRRC42ENSG00000116212.10chr1+544134605441349454411749544122225441765854418145-0.459000.006930.06860excludedHepG2U2AF2
SELRRC42ENSG00000116212.10chr1+544238215442395354417658544181455442602854426147-0.100000.000000.00001excludedK562AQR
SELRRC42ENSG00000116212.10chr1+544276635442779554426028544261475442796854428082-0.062000.000840.01053excludedK562AQR
SELRRC42ENSG00000116212.10chr1+5441346054413494544117495441222254417658544181450.266000.000340.01667includedK562FXR1
SELRRC42ENSG00000116212.10chr1+544134605441349454411749544122225441765854418145-0.223000.000000.00004excludedK562PUS1
SELRRC42ENSG00000116212.10chr1+544135345441365454412030544122225441765854418145-0.298000.000290.06197excludedK562SBDS
SELRRC42ENSG00000116212.10chr1+5442382154423953544176585441814554426028544261470.074000.000280.02680includedK562HNRNPUL1
SELRRC42ENSG00000116212.10chr1+544238215442395354417658544181455442602854426141-0.130000.000060.00388excludedK562HNRNPU
SELRRC42ENSG00000116212.10chr1+544134605441349454411749544122225441765854418145-0.163000.000350.01190excludedK562RBM15
SELRRC42ENSG00000116212.10chr1+544134605441349454411749544122225441765854418145-0.325000.000040.01581excludedK562NPM1
SELRRC42ENSG00000116212.10chr1+5441353454413654544120305441222254417658544181450.259000.005380.07350includedK562HNRNPC
MXELRRC42ENSG00000116212.10chr1+54426028544261475442796854428082544176585441814554431968544320530.086000.000180.002001includedK562AQR
MXELRRC42ENSG00000116212.10chr1+54426028544261475442791754428082544176585441814554431968544320530.087000.000160.001831includedK562AQR
MXELRRC42ENSG00000116212.10chr1+5442382154423953544260285442614754417658544181455442770654427795-0.135000.009320.088482includedK562U2AF2
MXELRRC42ENSG00000116212.10chr1+5442602854426147544277065442779554423821544239535442796854428082-0.168000.000530.025592includedK562TAF15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LRRC42 is not avaliable on ENCORE database.